Table S1. Defined Reference Groups for Chimera Detection with DECIPHER

Reference Group Identification / Number of Sequences in Group / Genera (or lowest order classification) included in Group
Staphylococcus / 58764 / Staphylococcus.
unclassified_Bacteria / 42468 / unclassified_Bacteria.
Corynebacterium / 41653 / unclassified_Corynebacteriaceae. Turicella. Corynebacterium.
Streptococcus / 41048 / Streptococcus.
Propionibacterium / 36045 / Aestuariimicrobium. Microlunatus. Friedmanniella. Propionicicella. unclassified_Propionibacteriaceae. Tessaracoccus. Propionibacterium. Brooklawnia. Granulicoccus. Luteococcus. Micropruina. Propioniferax. Propionimicrobium.
Pseudomonas / 31104 / Pseudomonas.
unclassified_Lachnospiraceae / 26723 / unclassified_"Lachnospiraceae".
unclassified_Gammaproteobacteria / 23011 / unclassified_Gammaproteobacteria. unclassified_Cardiobacteriaceae. Salinisphaera. Cardiobacterium. Dichelobacter. Suttonella.
Bacteroides / 21236 / Bacteroides.
Lactobacillus / 20885 / Lactobacillus. Paralactobacillus. Pediococcus. unclassified_Lactobacillaceae.
Bacillus / 20861 / Bacillus.
Prevotella / 20283 / Prevotella.
Rhodobacteraceae / 17806 / Oceanibulbus. Catellibacterium. Ahrensia. Tateyamaria. Stappia. Rubellimicrobium. Nereida. unclassified_Rhodobacteraceae. Amaricoccus. Rhodobacter. Roseovarius. Thalassobacter. Silicibacter. Sulfitobacter. Loktanella. Paracoccus. Albidovulum. Albimonas. Antarctobacter. Citreicella. Citreimonas. Dinoroseobacter. Donghicola. Haematobacter. Jannaschia. Ketogulonicigenium. Labrenzia. Leisingera. Lutimaribacter. Maribius. Marinovum. Maritimibacter. Marivita. Methylarcula. Nautella. Nesiotobacter. Oceanicola. Octadecabacter. Palleronia. Pannonibacter. Pelagibaca. Pelagicola. Phaeobacter. Ponticoccus. Pseudorhodobacter. Pseudoruegeria. Pseudovibrio. Rhodobaca. Rhodothalassium. Rhodovulum. Roseibaca. Roseibium. Roseicyclus. Roseinatronobacter. Roseisalinus. Roseivivax. Roseobacter. Rubrimonas. Ruegeria. Sagittula. Salinihabitans. Salipiger. Sediminimonas. Seohaeicola. Shimia. Thalassobius. Thalassococcus. Thioclava. Tranquillimonas. Tropicibacter. Tropicimonas. Wenxinia. Yangia.
unclassified_Clostridiales / 16263 / unclassified_Clostridiales.
unclassified_Ruminococcaceae / 12600 / unclassified_"Ruminococcaceae".
unclassified_Archaea / 12506 / unclassified_Archaea.
Streptomyces / 11639 / unclassified_Streptomycetaceae. Streptacidiphilus. Kitasatospora. Streptomyces.
unclassified_Thermoprotei / 11400 / unclassified_Thermoprotei.
Burkholderiaceae / 11162 / Wautersia. Paucimonas. unclassified_Burkholderiaceae. Polynucleobacter. Pandoraea. Cupriavidus. Limnobacter. Burkholderia. Ralstonia. Chitinimonas. Thermothrix.
Xanthomonadaceae / 10742 / Aspromonas. Luteibacter. Silanimonas. unclassified_Xanthomonadales. Wohlfahrtiimonas. Aquimonas. Dokdonella. Thermomonas. unclassified_Xanthomonadaceae. Arenimonas. Rhodanobacter. Lysobacter. Rudaea. Stenotrophomonas. Luteimonas. Dyella. Pseudoxanthomonas. Frateuria. Fulvimonas. Ignatzschineria. Xanthomonas. Xylella.
unclassified_Bacteroidetes / 10732 / unclassified_"Bacteroidetes".
Burkholderiales_incertae_sedis / 10466 / Rhizobacter. Aquincola. Tepidimonas. unclassified_Burkholderiales_incertae_sedis. Thiobacter. Thiomonas. Ideonella. Methylibium. Aquabacterium. Inhella. Leptothrix. Mitsuaria. Paucibacter. Rubrivivax. Xylophilus.
Acinetobacter / 10458 / Acinetobacter.
Campylobacterales / 10315 / Nitratiruptor. Hydrogenimonas. Sulfurospirillum. Sulfurimonas. unclassified_Campylobacterales. Arcobacter. unclassified_Helicobacteraceae. Sulfuricurvum. Sulfurovum. Campylobacter. Helicobacter. unclassified_Campylobacteraceae. Wolinella. Caminibacter. Lebetimonas. Nautilia. Nitratifractor. Thioreductor. unclassified_Nautiliaceae.
Chloroflexi / 10043 / Sphaerobacter. unclassified_Thermomicrobia. unclassified_Anaerolineaceae. Caldilinea. unclassified_"Chloroflexi". Herpetosiphon. Longilinea. Bellilinea. Dehalogenimonas. Dehalococcoides. Chloroflexus. unclassified_"Chloroflexi". unclassified_"Dehalococcoidetes". Anaerolinea. Leptolinea. Levilinea. Thermomicrobium.
Incertae Sedis XIV / 10020 / Howardella. Anaerobranca. Blautia. Dethiosulfatibacter. Proteocatella.
Verrucomicrobia / 9891 / unclassified_Opitutaceae. Alterococcus. unclassified_Puniceicoccaceae. unclassified_Verrucomicrobiaceae. unclassified_"Verrucomicrobia". Puniceicoccus. Opitutus. Subdivision3_genera_incertae_sedis. Luteolibacter. Subdivision5_genera_incertae_sedis. Akkermansia. Persicirhabdus. Verrucomicrobium. Coraliomargarita. Spartobacteria_genera_incertae_sedis. Cerasicoccus. Pelagicoccus. unclassified_Opitutae. Xiphinematobacter. unclassified_Spartobacteria. Rubritalea. Haloferula. Prosthecobacter. Roseibacillus. unclassified_Verrucomicrobiales.
unclassified_Alphaproteobacteria / 9856 / unclassified_Alphaproteobacteria_incertae_sedis. Elioraea. Insolitispirillum. unclassified_Alphaproteobacteria. Parvularcula. Geminicoccus. Novispirillum. Kiloniella. Kordiimonas. Sneathiella.
Planctomycetaceae / 9827 / Zavarzinella. Pirellula. unclassified_Planctomycetaceae. Rhodopirellula. Planctomyces. Gemmata. Singulisphaera. Blastopirellula. Isosphaera. Schlesneria.
unclassified_Betaproteobacteria / 9711 / unclassified_Betaproteobacteria. "Procabacter".
Vibrionaceae / 9440 / unclassified_Vibrionaceae. Salinivibrio. Listonella. Photobacterium. Vibrio. Aliivibrio. Enterovibrio. Grimontia.
Neisseriaceae / 9264 / Leeia. Deefgea. Vitreoscilla. Aquaspirillum. Chitinibacter. Vogesella. unclassified_Neisseriaceae. Kingella. Neisseria. Alysiella. Andreprevotia. Aquitalea. Bergeriella. Chitinilyticum. Chromobacterium. Conchiformibius. Formivibrio. Gulbenkiania. Laribacter. Microvirgula. Paludibacterium. Pseudogulbenkiania. Silvimonas. Simonsiella. Stenoxybacter. Uruburuella.
Pelagibacter / 9221 / Pelagibacter.
unclassified_Euryarchaeota / 9155 / unclassified_"Euryarchaeota". Archaeoglobus. Ferroglobus. Geoglobus. unclassified_Archaeoglobaceae. Methanopyrus.
Faecalibacterium / 9132 / Faecalibacterium.
Gp1 / 9097 / Gp1.
Chloroplast / 8664 / Chlorophyta. Bacillariophyta. Cryptomonadaceae. unclassified_Chloroplast. Streptophyta. Bangiophyceae. Chlorarachniophyceae. Euglenida.
Escherichia/Shigella / 8414 / Escherichia/Shigella.
unclassified_Enterobacteriaceae / 8393 / unclassified_Enterobacteriaceae.
unclassified_Actinomycetales / 8275 / unclassified_Actinomycetales. Actinopolyspora. Actinospica. Catenulispora. Kineococcus. Kineosporia. Quadrisphaera. unclassified_Kineosporiaceae.
Oxalobacteraceae / 8210 / Herminiimonas. unclassified_Oxalobacteraceae. Duganella. Naxibacter. Massilia. Herbaspirillum. Janthinobacterium. Collimonas. Oxalicibacterium. Oxalobacter. Telluria. Undibacterium.
Clostridiaceae / 8207 / Natronincola. Caminicella. Clostridiisalibacter. unclassified_"Clostridiaceae 1". unclassified_Clostridiaceae. Sarcina. Clostridium. Heliobacillus. Heliobacterium. Heliorestis. unclassified_"Heliobacteriaceae". Anaerobacter. Caloramator. Oxobacter. Alkaliphilus. Anoxynatronum. Tindallia. unclassified_Clostridiaceae 2. Caloranaerobacter. Thermohalobacter. unclassified_Clostridiaceae 3. Geosporobacter. Thermotalea. unclassified_Clostridiaceae 4.
Cloacibacterium / 8125 / Cloacibacterium.
unclassified_Cyanobacteria / 7967 / unclassified_Cyanobacteria. GpIX.
Rhodocyclaceae / 7955 / Uliginosibacterium. Shinella. Azoarcus. unclassified_Rhodocyclaceae. Sterolibacterium. Azospira. Propionivibrio. Zoogloea. Thauera. Methyloversatilis. Dechloromonas. Azonexus. Azovibrio. Denitratisoma. Ferribacterium. Quatrionicoccus. Rhodocyclus.
Oceanospirillales / 7947 / Salinicola. Halospina. Spongiispira. Amphritea. unclassified_Oceanospirillales. Thalassolituus. unclassified_Halomonadaceae. Neptunomonas. Neptuniibacter. Marinomonas. unclassified_Oceanospirillaceae. Endozoicomonas. Alcanivorax. Halomonas. Saccharospirillum. Kangiella. Hahella. Zooshikella. unclassified_Hahellaceae. Aidingimonas. Carnimonas. Chromohalobacter. Cobetia. Halotalea. Halovibrio. Kushneria. Modicisalibacter. Salicola. Zymobacter. Litoricola. Balneatrix. Bermanella. Marinospirillum. Nitrincola. Oceaniserpentilla. Oceanobacter. Oceanospirillum. Oleispira. Pseudospirillum. Reinekea. Oleiphilus.
Veillonella / 7836 / Veillonella.
Chitinophagaceae / 7818 / Parasegetibacter. Lacibacter. Gracilimonas. unclassified_"Chitinophagaceae". Sediminibacterium. Ferruginibacter. Segetibacter. Terrimonas. Flavisolibacter. Balneola. Chitinophaga. Filimonas. Niabella. Niastella.
Methanosarcinales / 7707 / Methanohalophilus. Methanimicrococcus. Methanosarcina. Methanosaeta. Methanomethylovorans. unclassified_Methanosarcinales. Methanolobus. unclassified_Methanosarcinaceae. Methanococcoides. Methanosalsum. Methermicoccus.
Microbacteriaceae / 7566 / Humibacter. unclassified_Microbacteriaceae. Plantibacter. Leucobacter. Frigoribacterium. Cryobacterium. Curtobacterium. Microbacterium. Agreia. Agrococcus. Agromyces. Clavibacter. Frondihabitans. Glaciibacter. Gulosibacter. Klugiella. Labedella. Leifsonia. Microcella. Microterricola. Mycetocola. Okibacterium. Phycicola. Pseudoclavibacter. Rathayibacter. Rhodoglobus. Salinibacterium. Schumannella. Subtercola. Yonghaparkia. Zimmermannella.
Roseburia / 7543 / Roseburia.
Pasteurellaceae / 7522 / Bibersteinia. unclassified_Pasteurellaceae. Aggregatibacter. Haemophilus. Actinobacillus. Avibacterium. Chelonobacter. Gallibacterium. Histophilus. Lonepinella. Mannheimia. Nicoletella. Pasteurella. Phocoenobacter. Volucribacter.
Gp6 / 7329 / Gp6.
Desulfobacterales / 7109 / Desulfobotulus. Desulforegula. Desulfocella. Desulfotignum. Desulfurivibrio. unclassified_Desulfobacterales. Desulfatirhabdium. Desulfocapsa. unclassified_Desulfobacteraceae. Desulfonema. Desulforhopalus. unclassified_Desulfobulbaceae. Desulfosarcina. Desulfobulbus. Desulfobacterium. Desulfatibacillum. Desulfatiferula. Desulfobacter. Desulfobacula. Desulfococcus. Desulfofaba. Desulfofrigus. Desulfoluna. Desulfospira. Desulfofustis. Desulfopila. Desulfotalea.
Erysipelotrichaceae / 7066 / Holdemania. Turicibacter. unclassified_Erysipelotrichaceae. Allobaculum. Catenibacterium. Bulleidia. Solobacterium. Coprobacillus. Erysipelothrix. Sharpea.
Family II / 6816 / GpIIa. GpIIb. unclassified_Family II. GpIII.
Flavobacterium / 6796 / Flavobacterium.
Diaphorobacter / 6786 / Diaphorobacter.
unclassified_Rhizobiales / 6786 / unclassified_Rhizobiales. Bartonella. Cohaesibacter.
Bradyrhizobiaceae / 6571 / Blastobacter. Balneimonas. unclassified_Bradyrhizobiaceae. Afipia. Nitrobacter. Bradyrhizobium. Agromonas. Bosea. Rhodoblastus. Rhodopseudomonas.
unclassified_Porphyromonadaceae / 6282 / unclassified_"Porphyromonadaceae".
Gp4 / 6156 / Gp4.
Rhizobiaceae / 6085 / unclassified_Rhizobiaceae. Rhizobium. Ensifer. Kaistia. Sinorhizobium.
Alteromonadaceae / 6074 / Aliagarivorans. Marinobacterium. Agarivorans. Haliea. unclassified_Alteromonadaceae. Alteromonas. Marinobacter. Glaciecola. Aestuariibacter. Alishewanella. Bowmanella. Marinimicrobium. Melitea. Microbulbifer. Saccharophagus. Salinimonas.
unclassified_Deltaproteobacteria / 5935 / unclassified_Deltaproteobacteria. Syntrophorhabdus.
Mycobacterium / 5855 / Mycobacterium.
Enterococcaceae / 5820 / Catellicoccus. unclassified_"Enterococcaceae". Enterococcus. Atopobacter. Bavariicoccus. Melissococcus. Pilibacter. Tetragenococcus. Vagococcus.
unclassified_Flavobacteriaceae / 5645 / unclassified_Flavobacteriaceae.
Carnobacteriaceae / 5617 / unclassified_"Carnobacteriaceae". Desemzia. Trichococcus. Atopostipes. Carnobacterium. Alloiococcus. Granulicatella. Dolosigranulum. Alkalibacterium. Allofustis. Atopococcus. Isobaculum. Lacticigenium. Marinilactibacillus.
Acidimicrobidae / 5595 / Iamia. Ilumatobacter. Ferrimicrobium. unclassified_"Acidimicrobineae". unclassified_Acidimicrobidae. Acidimicrobium. Ferrithrix. unclassified_Acidimicrobiaceae.
Alcaligenaceae / 5554 / Tetrathiobacter. unclassified_Alcaligenaceae. Azohydromonas. Achromobacter. Pigmentiphaga. Castellaniella. Parasutterella. Derxia. Sutterella. Alcaligenes. Advenella. Bordetella. Brackiella. Kerstersia. Oligella. Pelistega. Pusillimonas. Taylorella.
Barnesiella / 5498 / Barnesiella.
Spirochaetales / 5384 / unclassified_Leptospiraceae. Turneriella. Spirochaeta. Treponema. Brachyspira. Leptonema. Leptospira. Borrelia. unclassified_Spirochaetaceae. Exilispira. unclassified_Spirochaetales.
Acidovorax / 5378 / Acidovorax.
Fusobacteriales / 5362 / unclassified_"Leptotrichiaceae". Streptobacillus. Propionigenium. Psychrilyobacter. unclassified_"Fusobacteriales". Cetobacterium. Leptotrichia. Fusobacterium. Ilyobacter. unclassified_"Fusobacteriaceae". Sebaldella. Sneathia.
Methanobacteriaceae / 5222 / Methanobacterium. Methanothermobacter. unclassified_Methanobacteriaceae. Methanobrevibacter. Methanosphaera.
unclassified_Comamonadaceae / 5176 / unclassified_Comamonadaceae.
Sphingomonas / 5148 / Sphingomonas.
unclassified_Proteobacteria / 5142 / unclassified_"Proteobacteria".
Methanomicrobiales / 5041 / Methanofollis. unclassified_Methanomicrobiales. Methanoculleus. Methanosphaerula. Methanolinea. unclassified_Methanomicrobiaceae. Methanospirillum. Methanomicrobium. Methanocorpusculum. Methanoplanus. Methanocalculus. Methanogenium. Methanolacinia.
unclassified_Bacteroidales / 4951 / unclassified_"Bacteroidales". Alkaliflexus. Anaerophaga. unclassified_"Marinilabiaceae". Phocaeicola.
Aeromonadales / 4923 / Succinimonas. Oceanisphaera. unclassified_Aeromonadaceae. Anaerobiospirillum. Tolumonas. Succinivibrio. Aeromonas. Oceanimonas. Zobellella. Ruminobacter. unclassified_Succinivibrionaceae. unclassified_Aeromonadales.
Desulfuromonadales / 4907 / unclassified_Geobacteraceae. Desulfuromonas. unclassified_Desulfuromonadales. Desulfuromusa. unclassified_Desulfuromonadaceae. Geobacter. Malonomonas. Pelobacter. Geoalkalibacter. Geopsychrobacter. Geothermobacter.
Caulobacterales / 4847 / Ponticaulis. Hirschia. unclassified_Hyphomonadaceae. Hellea. Caulobacter. Hyphomonas. Asticcacaulis. unclassified_Caulobacteraceae. Brevundimonas. Phenylobacterium. Henriciella. Maribaculum. Maricaulis. Oceanicaulis. Robiginitomaculum. Woodsholea. unclassified_Caulobacterales.
Paenibacillaceae / 4833 / Rummeliibacillus. Solibacillus. unclassified_"Paenibacillaceae". Cohnella. Thermicanus. Brevibacillus. Paenibacillus. Ammoniphilus. Aneurinibacillus. Oxalophagus. Saccharibacillus. Thermobacillus. Pullulanibacillus.
Polaribacter / 4750 / Epilithonimonas. Robiginitalea. Salinimicrobium. Zunongwangia. Leeuwenhoekiella. Myroides. Ornithobacterium. Cellulophaga. Ulvibacter. Polaribacter. Actibacter. Aequorivita. Aestuariicola. Algibacter. Aquimarina. Arenibacter. Bizionia. Coenonia. Costertonia. Croceibacter. Croceitalea. Elizabethkingia. Empedobacter. Eudoraea. Flagellimonas. Flaviramulus. Formosa. Fulvibacter. Gaetbulibacter. Galbibacter. Gelidibacter. Gillisia. Gilvibacter. Gramella. Jejuia. Joostella. Kaistella. Kordia. Kriegella. Krokinobacter. Lacinutrix. Leptobacterium. Lutaonella. Lutibacter. Lutimonas. Maribacter. Mariniflexile. Marixanthomonas. Mesoflavibacter. Mesonia. Muricauda. Nonlabens. Persicivirga. Pibocella. Planobacterium. Pseudozobellia. Psychroflexus. Psychroserpens. Riemerella. Salegentibacter. Sandarakinotalea. Sediminibacter. Sediminicola. Stenothermobacter. Subsaxibacter. Subsaximicrobium. Tamlana. Tenacibaculum. Vitellibacter. Wautersiella. Weeksella. Winogradskyella. Yeosuana. Zeaxanthinibacter. Zhouia. Zobellia.
Methylobacteriaceae / 4657 / Parvibaculum. Microvirga. Afifella. Anderseniella. Methylobacterium. Meganema. unclassified_Methylobacteriaceae. Rhodobium. Roseospirillum. unclassified_Rhodobiaceae.
Halobacteriaceae / 4576 / Natronococcus. Natronomonas. Haloferax. unclassified_Halobacteriaceae. Haladaptatus. Halalkalicoccus. Haloarcula. Halobacterium. Halobiforma. Halococcus. Halogeometricum. Halomicrobium. Halopiger. Haloplanus. Haloquadratum. Halorhabdus. Halorubrum. Halosarcina. Halosimplex. Halostagnicola. Haloterrigena. Halovivax. Natrialba. Natrinema. Natronobacterium. Natronolimnobius. Natronorubrum.
Peptostreptococcaceae / 4516 / Lutispora. Filifactor. Gracilibacter. Sporacetigenium. Peptostreptococcus. unclassified_"Peptostreptococcaceae". unclassified_"Gracilibacteraceae". Tepidibacter.
Gp3 / 4453 / Gp3.
Ruminococcus / 4450 / Ruminococcus.
Nocardiaceae / 4354 / Rhodococcus. Gordonia. Millisia. Nocardia. Skermania. Smaragdicoccus. Williamsia. unclassified_Nocardiaceae.
Parabacteroides / 4350 / Tannerella. Petrimonas. Dysgonomonas. Butyricimonas. Paludibacter. Proteiniphilum. Parabacteroides. Odoribacter.
Arthrobacter / 4348 / Arthrobacter.
Rhodospirillaceae / 4276 / Rhodovibrio. Caenispirillum. unclassified_Rhodospirillaceae. Defluviicoccus. Telmatospirillum. Skermanella. Oceanibaculum. Pelagibius. Nisaea. Azospirillum. Fodinicurvata. Inquilinus. Magnetospirillum. Marispirillum. Phaeospirillum. Rhodocista. Rhodospira. Rhodospirillum. Roseospira. Thalassobaculum. Thalassospira. Tistrella.
Bifidobacteriaceae / 4270 / unclassified_Bifidobacteriaceae. Alloscardovia. Bifidobacterium. Aeriscardovia. Gardnerella. Metascardovia. Parascardovia. Scardovia.
Coriobacteriaceae / 3986 / unclassified_Coriobacteriaceae. Enterorhabdus. Olsenella. Slackia. Atopobium. Collinsella. Adlercreutzia. Asaccharobacter. Coriobacterium. Cryptobacterium. Denitrobacterium. Eggerthella. Gordonibacter. Paraeggerthella.
Acetobacteraceae / 3968 / Rhodovarius. Rhodopila. Acidisoma. unclassified_Acetobacteraceae. Acidocella. Roseomonas. Acetobacter. Acidiphilium. Acidicaldus. Acidisphaera. Acidomonas. Asaia. Belnapia. Craurococcus. Gluconacetobacter. Gluconobacter. Granulibacter. Kozakia. Neoasaia. Paracraurococcus. Roseococcus. Rubritepida. Saccharibacter. Stella. Swaminathania. Tanticharoenia.
Coprococcus / 3801 / Coprococcus.
Oscillibacter / 3784 / Oscillibacter.
Nitrospiraceae / 3758 / Nitrospira. Thermodesulfovibrio. Leptospirillum. unclassified_"Nitrospiraceae".
Desulfovibrionales / 3726 / unclassified_Desulfohalobiaceae. unclassified_Desulfovibrionales. Desulfohalobium. Lawsonia. unclassified_Desulfovibrionaceae. Desulfomicrobium. Desulfovibrio. Desulfonatronospira. Desulfonatronovibrio. Desulfonauticus. Desulfothermus. Desulfovermiculus. Desulfonatronum. Desulfocurvus.
Cytophagaceae / 3674 / Cytophaga. Microscilla. Roseivirga. Dyadobacter. Sporocytophaga. Adhaeribacter. Spirosoma. unclassified_"Flammeovirgaceae". Hymenobacter. Leadbetterella. Arcicella. unclassified_Cytophagaceae. Fabibacter. Flammeovirga. Flexithrix. Limibacter. Marinoscillum. Perexilibacter. Persicobacter. Rapidithrix. Reichenbachiella. Thermonema. Effluviibacter. Emticicia. Flectobacillus. Flexibacter. Larkinella. Persicitalea. Pontibacter. Rhodonellum. Rudanella. Runella.
Nitrosomonadaceae / 3603 / Nitrosomonas. Nitrosospira. unclassified_Nitrosomonadaceae.
Chromatiales / 3600 / Aquisalimonas. Thiohalospira. Thiohalocapsa. Chromatium. Thioalkalispira. unclassified_Halothiobacillaceae. Granulosicoccus. Thiovirga. Thiocystis. unclassified_Chromatiales. unclassified_Chromatiaceae. Rheinheimera. unclassified_Ectothiorhodospiraceae. Thioalkalivibrio. Thiofaba. Allochromatium. Halochromatium. Isochromatium. Lamprocystis. Marichromatium. Nitrosococcus. Rhabdochromatium. Thioalkalicoccus. Thiobaca. Thiocapsa. Thiococcus. Thiodictyon. Thioflavicoccus. Thiolamprovum. Thiophaeococcus. Thiorhodococcus. Thiorhodovibrio. Alkalilimnicola. Alkalispirillum. Arhodomonas. Ectothiorhodosinus. Ectothiorhodospira. Halorhodospira. Natronocella. Thiorhodospira. Halothiobacillus. Thioalkalibacter.
Pseudoalteromonadaceae / 3599 / Algicola. Pseudoalteromonas. unclassified_Pseudoalteromonadaceae.
unclassified_Clostridia / 3595 / Dethiobacter. unclassified_Halanaerobiaceae. unclassified_"Clostridia". Halocella. Halanaerobium. Halothermothrix. Acetohalobium. Halanaerobacter. Halanaerobaculum. Halobacteroides. Halonatronum. Natroniella. Orenia. Selenihalanaerobacter. unclassified_Halobacteroidaceae. unclassified_Halanaerobiales. Natranaerobius. Natronovirga. unclassified_Natranaerobiaceae.
Enterobacter / 3573 / Enterobacter.
Acidobacteria_Gp10 / 3509 / unclassified_"Acidobacteria". Gp26. Gp11. Gp10. Gp18. Gp22. Gp15. Gp17. Gp13. Gp25. Gp9. Gp16. Gp21. Gp12. Gp19. Gp20. Gp23.
unclassified_Actinobacteria / 3505 / unclassified_Actinobacteria.
Hyphomicrobiaceae / 3462 / Pedomicrobium. Prosthecomicrobium. Devosia. Hyphomicrobium. Filomicrobium. unclassified_Hyphomicrobiaceae. Rhodoplanes. Angulomicrobium. Blastochloris. Cucumibacter. Maritalea. Methylorhabdus. Zhangella.
Gemella / 3449 / Gemella.
Cronobacter / 3283 / Rahnella. Trabulsiella. Cedecea. Kluyvera. Plesiomonas. Raoultella. Xenorhabdus. Morganella. Buttiauxella. Arsenophonus. Biostraticola. Brenneria. Budvicia. Cronobacter. Dickeya. Edwardsiella. Hafnia. Leminorella. Obesumbacterium. Pectobacterium. Photorhabdus. Pragia. Proteus. Samsonia. Sodalis. Tatumella. Thorsellia.
Lysinibacillus / 3239 / Salirhabdus. Saccharococcus. Caldalkalibacillus. Vulcanibacillus. Tumebacillus. Lysinibacillus. Alkalibacillus. Amphibacillus. Anoxybacillus. Aquisalibacillus. Cerasibacillus. Filobacillus. Gracilibacillus. Halalkalibacillus. Halobacillus. Halolactibacillus. Jeotgalibacillus. Lentibacillus. Marinibacillus. Natronobacillus. Oceanobacillus. Ornithinibacillus. Paraliobacillus. Paucisalibacillus. Piscibacillus. Pontibacillus. Salimicrobium. Salinibacillus. Salsuginibacillus. Sediminibacillus. Tenuibacillus. Terribacillus. Thalassobacillus. Ureibacillus. Virgibacillus. Viridibacillus.
Acidithiobacillales / 3229 / Acidithiobacillus. Thermithiobacillus. unclassified_Acidithiobacillales.
Serratia / 3124 / Serratia.
Actinomycetaceae / 3110 / Arcanobacterium. Actinomyces. Actinobaculum. Mobiluncus. Varibaculum. unclassified_Actinomycetaceae.
unclassified_Corynebacterineae / 3025 / unclassified_Corynebacterineae.
Mollicutes / 3022 / Asteroleplasma. Anaeroplasma. Acholeplasma. Entomoplasma. Mesoplasma. unclassified_Entomoplasmataceae. Spiroplasma. unclassified_Entomoplasmatales. Haloplasma. Mycoplasma. Ureaplasma. unclassified_Mycoplasmataceae. unclassified_Mollicutes.
GpI / 3003 / GpI.
unclassified_Burkholderiales / 2920 / unclassified_Burkholderiales.
Subdoligranulum / 2839 / Subdoligranulum.
Sphingobacteriaceae / 2825 / Nubsella. Parapedobacter. Solitalea. unclassified_Sphingobacteriaceae. Mucilaginibacter. Pedobacter. Sphingobacterium. Olivibacter. Pseudosphingobacterium.
Moraxella / 2809 / Moraxella.
Rubrobacteridae / 2781 / unclassified_Rubrobacteridae. Conexibacter. Patulibacter. Rubrobacter. unclassified_Solirubrobacterales. Solirubrobacter. Thermoleophilum.
Anaerococcus / 2761 / Anaerococcus.
Phascolarctobacterium / 2755 / Centipeda. Allisonella. Succiniclasticum. Sporotalea. Phascolarctobacterium. Megamonas. Schwartzia. Acidaminococcus. Mitsuokella. Acetonema. Anaeroarcus. Anaeroglobus. Anaeromusa. Anaerosinus. Anaerovibrio. Dendrosporobacter. Pectinatus. Pelosinus. Propionispira. Propionispora. Sporolituus. Sporomusa. Succinispira. Zymophilus.
Rothia / 2729 / Rothia.
Porphyromonas / 2703 / Porphyromonas.
Methylophilaceae / 2640 / Methylovorus. Methylotenera. unclassified_Methylophilaceae. Methylophilus. Methylobacillus.
Anaplasmataceae / 2639 / unclassified_Rickettsiales. Orientia. Rickettsia. Anaplasma. Ehrlichia. Neorickettsia. unclassified_Anaplasmataceae. unclassified_Rickettsiaceae.
Gp2 / 2531 / Gp2.
Leuconostocaceae / 2515 / Leuconostoc. Weissella. Fructobacillus. Oenococcus. unclassified_"Leuconostocaceae".
Thiotrichales / 2500 / unclassified_Thiotrichales. unclassified_Piscirickettsiaceae. Beggiatoa. Thiothrix. Methylophaga. Thiomicrospira. Francisella. Cycloclasticus. Hydrogenovibrio. Piscirickettsia. Sulfurivirga. Thioalkalimicrobium. Leucothrix. unclassified_Thiotrichaceae. Caedibacter. Fangia. unclassified_Thiotrichales_incertae_sedis.
unclassified_Bacillales / 2495 / unclassified_Bacillales. Caryophanon. Listeria. Alicyclobacillus. Brochothrix. Marinococcus. Sinobaca. Sporolactobacillus. Tuberibacillus.
Dorea / 2483 / Dorea.
Micromonosporaceae / 2474 / Krasilnikovia. Longispora. Virgisporangium. Catelliglobosispora. Luedemannella. unclassified_Micromonosporaceae. Actinoplanes. Micromonospora. Actinocatenispora. Asanoa. Catellatospora. Catenuloplanes. Couchioplanes. Dactylosporangium. Hamadaea. Pilimelia. Planosporangium. Plantactinospora. Pseudosporangium. Rugosimonospora. Salinispora. Spirilliplanes. Verrucosispora.
unclassified_Prevotellaceae / 2472 / unclassified_"Prevotellaceae".
unclassified_Sphingobacteriales / 2466 / unclassified_"Sphingobacteriales".
Dialister / 2443 / Dialister.
Butyrivibrio / 2430 / Johnsonella. Oribacterium. Syntrophococcus. Anaerosporobacter. Robinsoniella. Butyrivibrio. Catonella. Pseudobutyrivibrio. Marvinbryantia. Moryella. Acetitomaculum. Hespellia. Lachnobacterium. Parasporobacterium. Shuttleworthia. Sporobacterium.
Nocardioidaceae / 2416 / Actinopolymorpha. Jiangella. Kribbella. unclassified_Nocardioidaceae. Marmoricola. Nocardioides. Aeromicrobium. Pimelobacter.
Eubacteriaceae / 2398 / Garciella. unclassified_"Eubacteriaceae". Anaerofustis. Acetobacterium. Eubacterium. Alkalibacter. Pseudoramibacter.
Phyllobacteriaceae / 2317 / Aquamicrobium. Defluvibacter. Pseudaminobacter. Hoeflea. unclassified_Phyllobacteriaceae. Aminobacter. Phyllobacterium. Mesorhizobium. Nitratireductor.
Gemmatimonas / 2302 / Gemmatimonas.
Intrasporangiaceae / 2284 / unclassified_Bogoriellaceae. Intrasporangium. unclassified_Promicromonosporaceae. unclassified_Intrasporangiaceae. Ornithinimicrobium. Cellulosimicrobium. Bogoriella. Georgenia. Demetria. Dermacoccus. Kytococcus. unclassified_Dermacoccaceae. Arsenicicoccus. Fodinibacter. Humibacillus. Humihabitans. Janibacter. Knoellia. Kribbia. Lapillicoccus. Marihabitans. Ornithinicoccus. Oryzihumus. Phycicoccus. Serinicoccus. Terrabacter. Terracoccus. Tetrasphaera. Isoptericola. Myceligenerans. Promicromonospora. Xylanibacterium. Xylanimicrobium. Xylanimonas.
Streptosporangineae / 2252 / unclassified_Streptosporangineae. unclassified_Thermomonosporaceae. Streptomonospora. Sphaerisporangium. Thermobifida. Haloactinospora. Marinactinospora. Nocardiopsis. unclassified_Nocardiopsaceae. Acrocarpospora. Herbidospora. Microbispora. Microtetraspora. Nonomuraea. Planobispora. Planomonospora. Planotetraspora. Streptosporangium. Thermopolyspora. unclassified_Streptosporangiaceae. Actinoallomurus. Actinocorallia. Actinomadura. Spirillospora. Thermomonospora.
unclassified_Firmicutes / 2250 / unclassified_"Firmicutes". Thermolithobacter.
Rikenellaceae / 2232 / Alistipes. Rikenella. unclassified_"Rikenellaceae".
Kocuria / 2220 / unclassified_Micrococcaceae. Nesterenkonia. Kocuria. Acaricomes. Citricoccus. Renibacterium. Sinomonas. Zhihengliuella.
Peptococcaceae / 2168 / Peptococcus. Desulfonispora. Desulfitibacter. Dehalobacter. unclassified_Syntrophomonadaceae. Syntrophomonas. unclassified_Peptococcaceae 1. unclassified_Peptococcaceae 2. Pelotomaculum. Desulfosporosinus. Desulfitobacterium. Cryptanaerobacter. Desulfotomaculum. Desulfurispora. Sporotomaculum. Thermincola. unclassified_Peptococcaceae. Pelospora. Syntrophothermus. Thermosyntropha.
Acetivibrio / 2121 / Acetivibrio.
Lactococcus / 2040 / unclassified_Streptococcaceae. Lactococcus. Lactovum.
Klebsiella / 1966 / Klebsiella.
unclassified_Micrococcineae / 1966 / unclassified_Micrococcineae. Actinotalea. Cellulomonas. Oerskovia. Tropheryma. unclassified_Cellulomonadaceae. Dermatophilus. Kineosphaera. unclassified_Dermatophilaceae. Jonesia. Demequina. Ruania. Rarobacter. Sanguibacter. Yaniella.
TM7_genera_incertae_sedis / 1958 / TM7_genera_incertae_sedis.
Enhydrobacter / 1952 / Perlucidibaca. Alkanindiges. unclassified_Moraxellaceae. Enhydrobacter.
Family X / 1950 / GpXIII. GpX. GpXI. GpXII.
Incertae Sedis XII / 1948 / Anaerovorax. Acidaminobacter. Fusibacter. Mogibacterium. Guggenheimella. unclassified_Incertae Sedis XII. unclassified_Incertae Sedis XIII.
Pseudonocardineae / 1936 / Kibdelosporangium. unclassified_Pseudonocardiaceae. unclassified_Actinosynnemataceae. Actinomycetospora. Lentzea. Pseudonocardia. Actinokineospora. Actinosynnema. Lechevalieria. Saccharothrix. Umezawaea. Actinoalloteichus. Allokutzneria. Amycolatopsis. Crossiella. Goodfellowiella. Kutzneria. Prauserella. Saccharomonospora. Saccharopolyspora. Sciscionella. Streptoalloteichus. Thermobispora. Thermocrispum. unclassified_Pseudonocardineae.
unclassified_Pseudomonadaceae / 1914 / Azorhizophilus. Azomonas. unclassified_Pseudomonadaceae. Cellvibrio. Azotobacter.
Syntrophobacterales / 1899 / Hippea. Desulfoglaeba. Desulfobacca. Smithella. unclassified_Syntrophobacteraceae. Desulfomonile. unclassified_Syntrophobacterales. Syntrophobacter. unclassified_Syntrophaceae. Desulfurella. Syntrophus. Desulfacinum. Desulforhabdus. Desulfovirga. Thermodesulforhabdus.
Novosphingobium / 1891 / Novosphingobium.
Methylococcaceae / 1870 / Methylohalobius. Methylosoma. unclassified_Methylococcaceae. Methylomicrobium. Methylobacter. Methylocaldum. Methylomonas. Methylococcus. Methylosarcina. Methylosphaera. Methylothermus.
Sphingobium / 1870 / Sphingobium.
Planococcaceae / 1855 / Shimazuella. unclassified_Thermoactinomycetaceae. Kurthia. Planomicrobium. Paenisporosarcina. Sporosarcina. Bhargavaea. Filibacter. Planococcus. unclassified_Planococcaceae. Desmospora. Laceyella. Mechercharimyces. Planifilum. Seinonella. Thermoactinomyces. Thermoflavimicrobium.
Nannocystineae / 1848 / Haliangium. Enhygromyxa. Kofleria. unclassified_Nannocystaceae. Nannocystis. unclassified_Nannocystineae. Plesiocystis.
Psychrobacter / 1848 / Psychrobacter.
Comamonas / 1844 / Comamonas.
Saprospiraceae / 1767 / Aureispira. Haliscomenobacter. unclassified_"Saprospiraceae". Lewinella.
Butyricicoccus / 1764 / Ethanoligenens. Papillibacter. Lactonifactor. Anaerotruncus. Sporobacter. Butyricicoccus. Acetanaerobacterium. Anaerofilum. Fastidiosipila. Hydrogenoanaerobacterium.
Incertae Sedis XVI / 1751 / Symbiobacterium. Carboxydocella. Sulfobacillus. Thermaerobacter.
Selenomonas / 1750 / Selenomonas.
Micrococcus / 1744 / Micrococcus.
Cryomorphaceae / 1736 / Brumimicrobium. Fluviicola. unclassified_Cryomorphaceae. Owenweeksia. Crocinitomix. Cryomorpha. Lishizhenia. Sediminitomix.
Verminephrobacter / 1719 / Xenophilus. Pseudacidovorax. Malikia. Alicycliphilus. Ramlibacter. Simplicispira. Verminephrobacter. Brachymonas. Caenimonas. Caldimonas. Giesbergeria. Hylemonella. Lampropedia. Macromonas. Ottowia. Pseudorhodoferax. Roseateles. Schlegelella. Tepidicella.
Chryseobacterium / 1699 / Chryseobacterium.
unclassified_Bacillaceae / 1692 / unclassified_Bacillaceae.
Sorangiineae / 1650 / unclassified_Sorangiineae. unclassified_Polyangiaceae. Sorangium. Byssovorax. Phaselicystis. Chondromyces.
Deinococci / 1633 / unclassified_Thermaceae. Truepera. unclassified_Deinococcales. unclassified_Deinococci. Meiothermus. Deinococcus. Marinithermus. Oceanithermus. Thermus. Vulcanithermus.
Citrobacter / 1627 / Citrobacter.
Shewanella / 1626 / Shewanella.
Thermoplasmatales / 1615 / unclassified_Thermoplasmatales. Thermogymnomonas. Ferroplasma. Picrophilus. Thermoplasma.
unclassified_Veillonellaceae / 1607 / unclassified_Veillonellaceae.
Erythrobacteraceae / 1605 / Altererythrobacter. unclassified_Erythrobacteraceae. Erythrobacter. Porphyrobacter. Croceicoccus. Erythromicrobium.
Synergistaceae / 1605 / Dethiosulfovibrio. Aminiphilus. Aminobacterium. Cloacibacillus. Pyramidobacter. Thermovirga. unclassified_Synergistaceae. Anaerobaculum. Aminomonas. Jonquetella. Synergistes.
unclassified_Flavobacteriales / 1589 / unclassified_"Flavobacteriales".
Legionellales / 1538 / Tatlockia. Aquicella. Legionella. unclassified_Legionellaceae. Fluoribacter. unclassified_Legionellales.
Aerococcaceae / 1518 / Facklamia. Abiotrophia. Aerococcus. Dolosicoccus. Eremococcus. Globicatella. Ignavigranum. unclassified_"Aerococcaceae".
Aquificales / 1478 / unclassified_Aquificales. Thermosulfidibacter. Thermocrinis. Aquifex. Hydrogenivirga. Hydrogenobacter. Hydrogenobaculum. unclassified_Aquificaceae. Balnearium. Desulfurobacterium. Thermovibrio. unclassified_Desulfurobacteriaceae. Persephonella. Sulfurihydrogenibium. Venenivibrio. unclassified_Hydrogenothermaceae.
unclassified_Rhodospirillales / 1466 / unclassified_Rhodospirillales.
Cystobacterineae / 1465 / Hyalangium. unclassified_Cystobacterineae. Anaeromyxobacter. Corallococcus. unclassified_Cystobacteraceae. Archangium. Cystobacter. Stigmatella. Myxococcus. unclassified_Myxococcaceae.
Sinobacteraceae / 1443 / Alkanibacter. unclassified_Sinobacteraceae. Steroidobacter. Hydrocarboniphaga. Nevskia. Singularimonas. Sinobacter.
Capnocytophaga / 1424 / Capnocytophaga.
Parvimonas / 1419 / Proteiniborus. Anaerosphaera. Tissierella. Soehngenia. Sedimentibacter. Tepidimicrobium. Parvimonas. Gallicola. Helcococcus. Sporanaerobacter. Anaerovirgula.
Peptoniphilus / 1374 / Peptoniphilus.
unclassified_Sphingomonadaceae / 1369 / unclassified_Sphingomonadaceae.
Brucellaceae / 1349 / Daeguia. Mycoplana. unclassified_Brucellaceae. Pseudochrobactrum. Ochrobactrum. Brucella.
Sphingopyxis / 1341 / Sandaracinobacter. Sphingosinicella. Sandarakinorhabdus. Blastomonas. Sphingopyxis. Zymomonas.
Variovorax / 1339 / Variovorax.
Pantoea / 1290 / Pantoea.
Frankineae / 1285 / unclassified_Geodermatophilaceae. Glycomyces. unclassified_Nakamurellaceae. Blastococcus. Acidothermus. unclassified_Frankineae. Cryptosporangium. Fodinicola. Geodermatophilus. Modestobacter. Humicoccus. Nakamurella. Saxeibacter. Sporichthya. Haloglycomyces. Stackebrandtia. unclassified_Glycomycetaceae.
Anaerostipes / 1278 / Anaerostipes.
Hydrogenophaga / 1218 / Hydrogenophaga.
Bdellovibrionales / 1190 / unclassified_Bacteriovoracaceae. Peredibacter. Desulfarculus. Bdellovibrio. Bacteriovorax.
unclassified_Myxococcales / 1188 / unclassified_Myxococcales.
Exiguobacterium / 1184 / Exiguobacterium.
Thermoanaerobacterales / 1182 / Thermacetogenium. Coprothermobacter. unclassified_"Thermoanaerobacteraceae". Ammonifex. Caldanaerobacter. Caldanaerobius. Caldanaerovirga. Caldicellulosiruptor. Carboxydibrachium. Carboxydothermus. Desulfovirgula. Fervidicola. Gelria. Mahella. Moorella. Tepidanaerobacter. Thermanaeromonas. Thermoanaerobacter. Thermoanaerobacterium. Thermosediminibacter. Thermovenabulum. Thermodesulfobium. unclassified_"Thermoanaerobacterales".
Geobacillus / 1171 / Geobacillus.
Bacteroidetes_incertae_sedis / 1168 / Prolixibacter. unclassified_Bacteroidetes_incertae_sedis. Fulvivirga. Marinifilum.
Salmonella / 1154 / Salmonella.
Megasphaera / 1146 / Megasphaera.
Thermococci / 1144 / unclassified_Thermococcaceae. Methanocaldococcus. Methanococcus. Thermococcus. Methanotorris. Methanothermococcus. unclassified_Methanococcaceae. unclassified_Methanococcales. Palaeococcus. Pyrococcus.
GpIV / 1107 / GpIV.
Rhodoferax / 1105 / Rhodoferax.
Ktedonobacter / 1095 / Ktedonobacter.
Jeotgalicoccus / 1082 / Nosocomiicoccus. unclassified_"Staphylococcaceae". Salinicoccus. Macrococcus. Jeotgalicoccus.
Hydrogenophilaceae / 1070 / Tepidiphilus. Thiobacillus. unclassified_Hydrogenophilaceae. Hydrogenophilus. Petrobacter.
Finegoldia / 1047 / Finegoldia.
Delftia / 1032 / Delftia.
Gp7 / 1032 / Gp7.
Brevibacterium / 1021 / Brevibacterium.
Polaromonas / 987 / Polaromonas.
Chlorobi / 986 / Prosthecochloris. Chlorobium. Chlorobaculum. Chloroherpeton. unclassified_Chlorobiaceae.
Family V / 959 / GpVII. GpVIII. GpV. GpVI.
unclassified_Incertae Sedis XI / 945 / unclassified_Incertae Sedis XI.
Rhodothermaceae / 943 / unclassified_"Rhodothermaceae". Salisaeta. Salinibacter. Rhodothermus.
Methylocystaceae / 922 / Pleomorphomonas. Terasakiella. Methylosinus. unclassified_Methylocystaceae. Methylocystis. Methylopila.
Erwinia / 899 / Erwinia.
Colwelliaceae / 898 / Thalassomonas. unclassified_Colwelliaceae. Colwellia.
Deferribacteres / 868 / Caldithrix. Mucispirillum. Calditerrivibrio. Deferribacter. Denitrovibrio. Flexistipes. Geovibrio. unclassified_Deferribacteraceae. unclassified_Deferribacterales.
Gammaproteobacteria_incertae_sedis / 864 / Gilvimarinus. Thiohalorhabdus. Methylonatrum. Solimonas. unclassified_Gammaproteobacteria_incertae_sedis. Thiohalophilus. Sedimenticola. Alkalimonas. Methylohalomonas. Simiduia. Spongiibacter. Thiohalomonas.
Curvibacter / 857 / Curvibacter.
Paraprevotella / 837 / Xylanibacter. Hallella. Paraprevotella.
Beijerinckiaceae / 828 / unclassified_Beijerinckiaceae. Beijerinckia. Methylocella. Chelatococcus. Methylocapsa. Methylovirgula.
Acidobacteria_Gp5 / 824 / Gp5.
unclassified_Methanomicrobia / 817 / unclassified_"Methanomicrobia".
Idiomarinaceae / 785 / Ferrimonas. Idiomarina. Pseudidiomarina. Moritella. Paraferrimonas. unclassified_Ferrimonadaceae. unclassified_Idiomarinaceae. Paramoritella.
Xanthobacteraceae / 770 / Labrys. unclassified_Xanthobacteraceae. Starkeya. Pseudolabrys. Ancylobacter. Azorhizobium. Pseudoxanthobacter. Xanthobacter.
Providencia / 743 / Providencia.
Desulfurococcales / 704 / Thermosphaera. Staphylothermus. unclassified_Desulfurococcales. unclassified_Desulfurococcaceae. Aeropyrum. Desulfurococcus. Ignicoccus. Ignisphaera. Stetteria. Sulfophobococcus. Thermodiscus. Hyperthermus. Pyrodictium. Pyrolobus. unclassified_Pyrodictiaceae.
Chlamydiae / 702 / Simkania. Parachlamydia. unclassified_Parachlamydiaceae. Neochlamydia. unclassified_Chlamydiales. Chlamydia. Chlamydophila. unclassified_Chlamydiaceae. Waddlia.
Methanocellales / 700 / Methanocella.
Pelomonas / 682 / Pelomonas.
Holophagae / 678 / Gp24. Gp14. unclassified_Holophagae. unclassified_Holophagaceae. Acanthopleuribacter. Geothrix. Holophaga.
Dietziaceae / 673 / Segniliparus. Dietzia. Hoyosella. Tsukamurella.
Dermabacteraceae / 668 / Dermabacter. Brachybacterium. Beutenbergia. Salana. Serinibacter. unclassified_Beutenbergiaceae. Devriesea. Helcobacillus. unclassified_Dermabacteraceae.
Yersinia / 663 / Yersinia.
Sulfolobales / 627 / unclassified_Sulfolobaceae. Acidilobus. Stygiolobus. Metallosphaera. Sulfolobus. Caldisphaera. unclassified_Acidilobales. Acidianus. Sulfurisphaera.
Thermotogae / 627 / Thermotoga. Fervidobacterium. Geotoga. Kosmotoga. Marinitoga. Petrotoga. Thermosipho. unclassified_Thermotogaceae.
Cyclobacteriaceae / 588 / Aquiflexum. Algoriphagus. unclassified_"Cyclobacteriaceae". Belliella. Cyclobacterium. Echinicola.
OP10 / 585 / OP10_genera_incertae_sedis.
Thermoproteales / 573 / Thermocladium. unclassified_Thermoproteaceae. Vulcanisaeta. Thermofilum. unclassified_Thermoproteales. Caldivirga. Pyrobaculum. Thermoproteus.
Aurantimonadaceae / 517 / unclassified_"Aurantimonadaceae". Martelella. Aurantimonas. Fulvimarina. Amorphus.
Fibrobacteres / 454 / Fibrobacter.
unclassified_Lactobacillales / 442 / unclassified_"Lactobacillales".
OD1 / 396 / OD1_genera_incertae_sedis.
Lentisphaerae / 373 / Victivallis. Lentisphaera. unclassified_"Lentisphaeria".
WS3 / 310 / WS3_genera_incertae_sedis.
unclassified_Sphingomonadales / 296 / unclassified_Sphingomonadales.
unclassified_Alteromonadales / 227 / unclassified_Alteromonadales.
Korarchaeota / 213 / Candidatus Korarchaeum.
unclassified_Epsilonproteobacteria / 205 / unclassified_Epsilonproteobacteria.
OP11 / 188 / OP11_genera_incertae_sedis.
unclassified_Bacilli / 181 / unclassified_"Bacilli".
Psychromonadaceae / 172 / Psychromonas.
unclassified_Root / 169 / unclassified_Root.
SR1 / 152 / SR1_genera_incertae_sedis.
BRC1 / 137 / BRC1_genera_incertae_sedis.
unclassified_Actinobacteridae / 130 / unclassified_Actinobacteridae.
Thermodesulfobacteria / 128 / Caldimicrobium. Thermodesulfatator. Thermodesulfobacterium. unclassified_Thermodesulfobacteriaceae.
Caldiserica / 126 / Caldisericum.
Nitriliruptorales / 108 / Nitriliruptor.
unclassified_Pseudomonadales / 59 / unclassified_Pseudomonadales.
Nanoarchaeota / 54 / "Nanoarchaeum".
Alteromonadales_incertae_sedis / 45 / Teredinibacter.
Pseudomonadales_incertae_sedis / 40 / Dasania.
Dictyoglomi / 38 / Dictyoglomus.
unclassified_Propionibacterineae / 16 / unclassified_Propionibacterineae.
Chrysiogenetes / 6 / Chrysiogenes.