Table S1. 163Phcm1 Core Genes Identified Froma Global Collection 20 S. Typhi Resistance
Table S1. 163pHCM1 core genes identified froma global collection 20 S. Typhi resistance plasmids
Gene ID / Gene name / DescriptionHCM1.001c / putative membrane protein
HCM1.002c / hypothetical protein
HCM1.003c / hypothetical protein
HCM1.007c / corA / putative magnesium and cobalt transport protein
HCM1.008 / hypothetical protein
HCM1.010c / hypothetical protein
HCM1.013c / hypothetical protein
HCM1.015c / putative membrane protein
HCM1.017c / hypothetical protein
HCM1.020c / hypothetical protein
HCM1.021c / hypothetical protein
HCM1.022c / putative membrane protein
HCM1.023c / hypothetical protein
HCM1.024c / hypothetical protein
HCM1.030c / hypothetical protein
HCM1.031c / putative membrane protein
HCM1.032c / hypothetical protein
HCM1.033c / hypothetical protein
HCM1.034c / hypothetical protein
HCM1.035c / hypothetical protein
HCM1.036c / hypothetical protein
HCM1.038c / hypothetical protein
HCM1.039c / hypothetical protein
HCM1.040c / hypothetical protein
HCM1.041 / hypothetical protein
HCM1.042 / hypothetical protein
HCM1.043 / hypothetical protein
HCM1.043a / hypothetical protein
HCM1.044 / hypothetical protein
HCM1.045 / hypothetical protein
HCM1.046 / hypothetical protein
HCM1.048c / hypothetical protein
HCM1.049c / putative periplasmic protein
HCM1.050 / putative periplasmic protein
HCM1.051 / hypothetical protein
HCM1.052 / hypothetical protein
HCM1.053 / hypothetical protein
HCM1.054 / repA / replication initiation protein
HCM1.055ac / hypothetical protein
HCM1.055c / putative periplasmic protein
HCM1.056ac / hypothetical protein
HCM1.056c / putative periplasmic protein
HCM1.057c / hypothetical protein
HCM1.058c / putative DNA-binding protein
HCM1.059 / putative DNA modification methylase
HCM1.060c / hypothetical protein
HCM1.061c / hypothetical protein
HCM1.062c / hypothetical protein
HCM1.063c / hypothetical protein
HCM1.064 / repA2 / replication initiation protein
HCM1.067 / trhA / putative pilin precursor
HCM1.069 / trhL / putative plasmid transfer protein
HCM1.070 / putative pilus assembly protein
HCM1.071 / putative periplasmic protein
HCM1.072 / putative membrane protein
HCM1.073 / trhB / putative plasmid transfer protein
HCM1.074 / hypothetical protein
HCM1.075 / putative plasmid transfer protein
HCM1.076 / trhV / putative plasmid transfer protein
HCM1.077 / trhC / plasmid transfer protein
HCM1.086 / putative plasmid partition protein
HCM1.087 / putative plasmid partition protein
HCM1.088c / putative periplasmic protein
HCM1.089c / putative lipoprotein
HCM1.090c / putative periplasmic protein
HCM1.091c / hypothetical protein
HCM1.092 / putative plasmid stability/partition protein
HCM1.093 / hypothetical protein
HCM1.094 / htdA / transfer repressor
HCM1.095 / htdF / putative periplasmic protein
HCM1.096 / hypothetical protein
HCM1.097 / putative periplasmic protein
HCM1.098 / trhF / putative pilin maturation protein
HCM1.099 / trhW / plasmid transfer protein
HCM1.100 / trhU / plasmid transfer protein
HCM1.101 / trhN / plasmid transfer protein
HCM1.107 / trhI / putative DNA helicase
HCM1.108 / putative membrane protein
HCM1.109 / hypothetical protein
HCM1.110 / hypothetical protein
HCM1.111 / hypothetical protein
HCM1.112 / hypothetical protein
HCM1.114 / hypothetical protein
HCM1.116 / hypothetical protein
HCM1.116a / hypothetical protein
HCM1.117 / hypothetical protein
HCM1.118 / hypothetical protein
HCM1.119 / hypothetical protein
HCM1.120 / hypothetical protein
HCM1.121 / hypothetical protein
HCM1.122 / hypothetical protein
HCM1.123 / hypothetical protein
HCM1.124 / hypothetical protein
HCM1.125 / putative membrane protein
HCM1.126 / hypothetical protein
HCM1.127 / hypothetical protein
HCM1.128 / putative membrane protein
HCM1.130 / hypothetical protein
HCM1.131 / putative DNA replication terminus site-binding protein
HCM1.132 / hypothetical protein
HCM1.133 / putative membrane protein
HCM1.134c / putative recombinase
HCM1.135 / putative regulatory protein
HCM1.141 / hypothetical protein
HCM1.141ac / hypothetical protein
HCM1.142c / hypothetical protein
HCM1.143 / hypothetical protein
HCM1.144 / hypothetical protein
HCM1.145 / hypothetical protein
HCM1.146 / hypothetical protein
HCM1.166c / putative aminoglycoside acetyltransferase
HCM1.167 / putative integrase
HCM1.175 / putative DNA-binding protein
HCM1.176 / hypothetical protein
HCM1.177 / hypothetical protein
HCM1.178ac / putative HN-S type DNA-binding protein
HCM1.179c / hypothetical protein
HCM1.180c / hypothetical protein
HCM1.181 / hypothetical protein
HCM1.182 / hypothetical protein
HCM1.183 / hypothetical protein
HCM1.184c / hypothetical protein
HCM1.185c / hypothetical protein
HCM1.186c / hypothetical protein
HCM1.187c / putative DNA modification methylase
HCM1.188 / putative nuclease
HCM1.189 / hypothetical protein
HCM1.190 / hypothetical protein
HCM1.250c / putative periplasmic protein
HCM1.251c / hypothetical protein
HCM1.252 / mucA / putative DNA-repair modulator
HCM1.253 / putative DNA-repair modulator
HCM1.254c / putative outer membrane protein
HCM1.255 / putative lipoprotein
HCM1.256c / putative membrane protein
HCM1.257c / putative periplasmic protein
HCM1.258c / putative thiol-disulfide interchange protein
HCM1.259 / hypothetical protein
HCM1.261 / hypothetical protein
HCM1.263c / putative pilus-assembly protein
HCM1.264c / putative pilus-assembly protein
HCM1.266c / hypothetical protein
HCM1.268c / hypothetical protein
HCM1.269 / hypothetical protein
HCM1.270 / hypothetical protein
HCM1.271 / hypothetical protein
HCM1.272 / putative membrane protein
HCM1.273 / hypothetical protein
HCM1.275 / putative membrane protein
HCM1.276 / putative peptidase
HCM1.277 / putative periplasmic protein
HCM1.278c / hypothetical protein
HCM1.279ac / putative membrane protein
HCM1.279c / putative membrane protein
HCM1.280c / hypothetical protein
HCM1.281c / hypothetical protein
HCM1.282 / hypothetical protein
HCM1.283c / hypothetical protein
HCM1.284c / hypothetical protein
HCM1.286c / putative DNA-binding protein
HCM1.287c / hypothetical protein
HCM1.288 / hypothetical protein
HCM1.290c / putative stable plasmid inheritance protein Hok type
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