Table S1. 163Phcm1 Core Genes Identified Froma Global Collection 20 S. Typhi Resistance

Table S1. 163Phcm1 Core Genes Identified Froma Global Collection 20 S. Typhi Resistance

Table S1. 163pHCM1 core genes identified froma global collection 20 S. Typhi resistance plasmids

Gene ID / Gene name / Description
HCM1.001c / putative membrane protein
HCM1.002c / hypothetical protein
HCM1.003c / hypothetical protein
HCM1.007c / corA / putative magnesium and cobalt transport protein
HCM1.008 / hypothetical protein
HCM1.010c / hypothetical protein
HCM1.013c / hypothetical protein
HCM1.015c / putative membrane protein
HCM1.017c / hypothetical protein
HCM1.020c / hypothetical protein
HCM1.021c / hypothetical protein
HCM1.022c / putative membrane protein
HCM1.023c / hypothetical protein
HCM1.024c / hypothetical protein
HCM1.030c / hypothetical protein
HCM1.031c / putative membrane protein
HCM1.032c / hypothetical protein
HCM1.033c / hypothetical protein
HCM1.034c / hypothetical protein
HCM1.035c / hypothetical protein
HCM1.036c / hypothetical protein
HCM1.038c / hypothetical protein
HCM1.039c / hypothetical protein
HCM1.040c / hypothetical protein
HCM1.041 / hypothetical protein
HCM1.042 / hypothetical protein
HCM1.043 / hypothetical protein
HCM1.043a / hypothetical protein
HCM1.044 / hypothetical protein
HCM1.045 / hypothetical protein
HCM1.046 / hypothetical protein
HCM1.048c / hypothetical protein
HCM1.049c / putative periplasmic protein
HCM1.050 / putative periplasmic protein
HCM1.051 / hypothetical protein
HCM1.052 / hypothetical protein
HCM1.053 / hypothetical protein
HCM1.054 / repA / replication initiation protein
HCM1.055ac / hypothetical protein
HCM1.055c / putative periplasmic protein
HCM1.056ac / hypothetical protein
HCM1.056c / putative periplasmic protein
HCM1.057c / hypothetical protein
HCM1.058c / putative DNA-binding protein
HCM1.059 / putative DNA modification methylase
HCM1.060c / hypothetical protein
HCM1.061c / hypothetical protein
HCM1.062c / hypothetical protein
HCM1.063c / hypothetical protein
HCM1.064 / repA2 / replication initiation protein
HCM1.067 / trhA / putative pilin precursor
HCM1.069 / trhL / putative plasmid transfer protein
HCM1.070 / putative pilus assembly protein
HCM1.071 / putative periplasmic protein
HCM1.072 / putative membrane protein
HCM1.073 / trhB / putative plasmid transfer protein
HCM1.074 / hypothetical protein
HCM1.075 / putative plasmid transfer protein
HCM1.076 / trhV / putative plasmid transfer protein
HCM1.077 / trhC / plasmid transfer protein
HCM1.086 / putative plasmid partition protein
HCM1.087 / putative plasmid partition protein
HCM1.088c / putative periplasmic protein
HCM1.089c / putative lipoprotein
HCM1.090c / putative periplasmic protein
HCM1.091c / hypothetical protein
HCM1.092 / putative plasmid stability/partition protein
HCM1.093 / hypothetical protein
HCM1.094 / htdA / transfer repressor
HCM1.095 / htdF / putative periplasmic protein
HCM1.096 / hypothetical protein
HCM1.097 / putative periplasmic protein
HCM1.098 / trhF / putative pilin maturation protein
HCM1.099 / trhW / plasmid transfer protein
HCM1.100 / trhU / plasmid transfer protein
HCM1.101 / trhN / plasmid transfer protein
HCM1.107 / trhI / putative DNA helicase
HCM1.108 / putative membrane protein
HCM1.109 / hypothetical protein
HCM1.110 / hypothetical protein
HCM1.111 / hypothetical protein
HCM1.112 / hypothetical protein
HCM1.114 / hypothetical protein
HCM1.116 / hypothetical protein
HCM1.116a / hypothetical protein
HCM1.117 / hypothetical protein
HCM1.118 / hypothetical protein
HCM1.119 / hypothetical protein
HCM1.120 / hypothetical protein
HCM1.121 / hypothetical protein
HCM1.122 / hypothetical protein
HCM1.123 / hypothetical protein
HCM1.124 / hypothetical protein
HCM1.125 / putative membrane protein
HCM1.126 / hypothetical protein
HCM1.127 / hypothetical protein
HCM1.128 / putative membrane protein
HCM1.130 / hypothetical protein
HCM1.131 / putative DNA replication terminus site-binding protein
HCM1.132 / hypothetical protein
HCM1.133 / putative membrane protein
HCM1.134c / putative recombinase
HCM1.135 / putative regulatory protein
HCM1.141 / hypothetical protein
HCM1.141ac / hypothetical protein
HCM1.142c / hypothetical protein
HCM1.143 / hypothetical protein
HCM1.144 / hypothetical protein
HCM1.145 / hypothetical protein
HCM1.146 / hypothetical protein
HCM1.166c / putative aminoglycoside acetyltransferase
HCM1.167 / putative integrase
HCM1.175 / putative DNA-binding protein
HCM1.176 / hypothetical protein
HCM1.177 / hypothetical protein
HCM1.178ac / putative HN-S type DNA-binding protein
HCM1.179c / hypothetical protein
HCM1.180c / hypothetical protein
HCM1.181 / hypothetical protein
HCM1.182 / hypothetical protein
HCM1.183 / hypothetical protein
HCM1.184c / hypothetical protein
HCM1.185c / hypothetical protein
HCM1.186c / hypothetical protein
HCM1.187c / putative DNA modification methylase
HCM1.188 / putative nuclease
HCM1.189 / hypothetical protein
HCM1.190 / hypothetical protein
HCM1.250c / putative periplasmic protein
HCM1.251c / hypothetical protein
HCM1.252 / mucA / putative DNA-repair modulator
HCM1.253 / putative DNA-repair modulator
HCM1.254c / putative outer membrane protein
HCM1.255 / putative lipoprotein
HCM1.256c / putative membrane protein
HCM1.257c / putative periplasmic protein
HCM1.258c / putative thiol-disulfide interchange protein
HCM1.259 / hypothetical protein
HCM1.261 / hypothetical protein
HCM1.263c / putative pilus-assembly protein
HCM1.264c / putative pilus-assembly protein
HCM1.266c / hypothetical protein
HCM1.268c / hypothetical protein
HCM1.269 / hypothetical protein
HCM1.270 / hypothetical protein
HCM1.271 / hypothetical protein
HCM1.272 / putative membrane protein
HCM1.273 / hypothetical protein
HCM1.275 / putative membrane protein
HCM1.276 / putative peptidase
HCM1.277 / putative periplasmic protein
HCM1.278c / hypothetical protein
HCM1.279ac / putative membrane protein
HCM1.279c / putative membrane protein
HCM1.280c / hypothetical protein
HCM1.281c / hypothetical protein
HCM1.282 / hypothetical protein
HCM1.283c / hypothetical protein
HCM1.284c / hypothetical protein
HCM1.286c / putative DNA-binding protein
HCM1.287c / hypothetical protein
HCM1.288 / hypothetical protein
HCM1.290c / putative stable plasmid inheritance protein Hok type

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