(12) Patent Application Publication (10) Pub. No.: US 2015/0038552 A1 Rothenberg Et Al

(12) Patent Application Publication (10) Pub. No.: US 2015/0038552 A1 Rothenberg Et Al

US 20150.038552A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2015/0038552 A1 Rothenberg et al. (43) Pub. Date: Feb. 5, 2015 (54) ESOPHAGEAL MICRORNA EXPRESSION (52) U.S. Cl. PROFILES INEOSINOPHILIC ESOPHAGITIS CPC ........ CI2O I/6883 (2013.01); C12O 2600/178 (2013.01) (71) Applicant: CHILDRENS HOSPITAL USPC ............ 514/44A: 514/44 R: 514/169; 506/9: MEDICAL CENTER, Cincinnati, OH 506/16: 435/6.12 (US) (72) Inventors: Marc E. Rothenberg, Cincinnati, OH (57) ABSTRACT (US); Thomas Xuefeng Lu, Cincinnati, OH (US) Methods and compositions disclosed herein generally relate to methods of treating eosinophilic esophagitis (EE) and eosi (21) Appl. No.: 14/380,672 nophilic disorders by providing or enhancing a diagnosis of EE and eosinophilic disorders. In particular, the invention (22) PCT Filed: Feb. 22, 2013 relates to obtaining a sample from a patient, then quantifying from the sample an amount of one or more microRNAs (miR (86). PCT No.: PCT/US2013/027503 NAs) associated with EE, wherein an altered level of the S371 (c)(1) miRNA correlates with a positive diagnosis of EE. An EE (2) Date: s Aug. 22, 2014 diagnosis can then be provided or enhanced, based upon the 9 quantifying step, and an appropriate treatment can be admin Related U.S. Application Data istered to the patient. The invention further relates to diag (60) Provisional application No. 61/602,897, filed on Feb. nostic kits, tests, and/or arrays that can be used to quantify the 24, 2012. one or more miRNAs associated with EE, as well as treat s ments developed to up-regulate or down-regulate one or more Publication Classification miRNAs and/or their downstream pathways relevant to EE or asthma. The invention further relates to the use of IGF1 and (51) Int. Cl. IGF1R inhibitors for the treatment of EE and eosinophilic CI2O I/68 (2006.01) disorders. Patent Application Publication Feb. 5, 2015 Sheet 1 of 44 US 2015/0038552 A1 Eosiopic Sisopagitis Š: is3. s SSS 2 listegiated itsa - rs38-343-3; &-33SYS.S. its& ri-S33 &R-S&- 3-stric : s& -3-SS ... tsa-frir-23. $ iss-rriR-33.3 ... 8w-regiated : Patent Application Publication Feb. 5, 2015 Sheet 2 of 44 US 2015/0038552 A1 A B O 8 S. s w 6 cy & s: 4. s 2 O Nora Eo Normat EOE 5 < 0. Rs 3 1. s s s s S. 0.5 Notal EE Normal EE Peasa; Coffeator E F r?: 39, p < 0. & O - 15 iR-223 es s O & k s 0. 0. Norra EE circk Patent Application Publication Feb. 5, 2015 Sheet 3 of 44 US 2015/0038552 A1 Figure 3 Nota -- -- - - - - %???????????? ???? Patent Application Publication Feb. 5, 2015 Sheet 4 of 44 US 2015/0038552 A1 Figure 3 CQ R d . ------------------v--- - - - - - - - - - - - - - - - a-------------- d R-33 -- wwww. arra as w w w w we are a ran as are as a area wrew are as arr as a www. Patent Application Publication Feb. 5, 2015 Sheet 5 of 44 US 2015/0038552 A1 Figure 4 A Ci?tic Easinophic siasts Nirga Ssotagsts sophagitis Responder ex-ax,--- 388-ki-8 B & 84.8 Patent Application Publication Feb. 5, 2015 Sheet 6 of 44 US 2015/0038552 A1 G?un61-7 Patent Application Publication Feb. 5, 2015 Sheet 7 of 44 US 2015/0038552 A1 --------- czz-Aluº Patent Application Publication Feb. 5, 2015 Sheet 8 of 44 US 2015/0038552 A1 3363383 s Patent Application Publication Feb. 5, 2015 Sheet 9 of 44 US 2015/0038552 A1 S regation of inter s 33 2:28: it 23 82 and Sata: a sensen decreased kiter:S g gathway away m S is again&S Š is Sophies Se ce: ji{f Aika Sysinophis ce: Sectic as?ass S. Peotype in the genetageted mice finiFNAarge: redictions Š Gene Ontology Analysis ranscription Factor Binding graing Pathways Genes Gene interactions , miR-2: Target Geness Patent Application Publication Feb. 5, 2015 Sheet 10 of 44 US 2015/0038552 A1 Figure 6 earSci, Oreatio 2 2 c (.75 3 & 1 R Patent Application Publication Feb. 5, 2015 Sheet 11 of 44 US 2015/0038552 A1 exia. the arms pink:383F as: seri it 32 and Stat: {ei}838:a: ise assis here: gathway siastis hs pathway s six: ceased 3 sessie st18ritic cets it fig: afc 23eweianent airoa reg SE satistics S. celi nisinge; S herotype in the gene taggeted thics Gene intology Ajays:s Sigating Paiways Patent Application Publication Feb. 5, 2015 Sheet 12 of 44 US 2015/0038552 A1 Figure 8 A B R-432 s (s w S. s a. w e s s w w t t f Er Resissi: Nort& S&S Ressity C sta Rssssss Patent Application Publication Feb. 5, 2015 Sheet 13 of 44 US 2015/0038552 A1 Figure 9 Riv-42-3p 2.5 NS 2.O 15 O O5 Norna EOE Rennission Figure 10 60 s e Patent Application Publication Feb. 5, 2015 Sheet 14 of 44 US 2015/0038552 A1 i i w & S Sitti YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY. S. S. S. V. SS SS S X& SS 38. s'ss x's s ws: s id-jae fS Patent Application Publication Feb. 5, 2015 Sheet 15 of 44 US 2015/0038552 A1 Figure 12 A Sositoshi ease 2 -- ww R. S. B Neiti opis: 8 m were 88-8 ---- s seen air. -- & S asre s 3 is s: ^ : 8. 8 8. :S & fir-2 if- ir-i -j- Patent Application Publication Feb. 5, 2015 Sheet 16 of 44 US 2015/0038552 A1 Figure 13 fir-2 tit R iv. Day O ×2×2×zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz!?!?&…» Annexin W me Patent Application Publication Feb. 5, 2015 Sheet 17 of 44 US 2015/0038552 A1 Figure 14 A B R-2 it miR-2ith C R-as Ya. --- frik-24 Patent Application Publication Feb. 5, 2015 Sheet 18 of 44 US 2015/0038552 A1 Figure 15 A Day 8 Y an a R-R is S S S. F83. 83.3 ŠŠŠ Riksrö S S S ow-regiated & Rip-feguated --------------------- s irish Patent Application Publication Feb. 5, 2015 Sheet 19 of 44 US 2015/0038552 A1 C Lo C Lo o CN ver ve O. O. add-70Sc Lic-/SSD Lic-199Xd O Patent Application Publication Feb. 5, 2015 Sheet 20 of 44 US 2015/0038552 A1 43.8%;&#3438.48#28. Patent Application Publication Feb. 5, 2015 Sheet 21 of 44 US 2015/0038552 A1 66 Patent Application Publication Feb. 5, 2015 Sheet 22 of 44 US 2015/0038552 A1 Figure 17 lay Day 4 Ray & l 109 102 10° 10' 10° 10' 102 10° 10' Sigie&F C p < 0.0: Ray 4. Ray 8 ay 4 Patent Application Publication Feb. 5, 2015 Sheet 23 of 44 US 2015/0038552 A1 Figure 18 A $ one R-23 -i- r were 8-23 -i- s 2 k 8 8 & Patent Application Publication Feb. 5, 2015 Sheet 24 of 44 US 2015/0038552 A1 Figure 18 B Day 8 R.223 +f- ir-23 f. Day 2 R-223 -f- ri-223 f. Patent Application Publication Feb. 5, 2015 Sheet 25 of 44 US 2015/0038552 A1 Figure 18 C fir-23 +fi- R-83 -f- Patent Application Publication Feb. 5, 2015 Sheet 26 of 44 US 2015/0038552 A1 £3.4 vlcizloOldºg 6?eun61-7 y?c?z?c?oldºg Patent Application Publication Feb. 5, 2015 Sheet 27 of 44 US 2015/0038552 A1 Figure 20 A S. 3S st are iR-323i w; 3. Six : 2M Spe were fix -3 with Si,SS 5 are thir-223 is -i-. wire Yi-333i with S3 says ;3-223** 8-33 - - - - - re 2u M Sp s S Š S$ $383 the R323 -ki-- an ir-2-3 -i- 8x85 sy 4x109s 2x is 24 25 25 27 28 28 28 23 Picropodophyllir (M) Patent Application Publication Feb. 5, 2015 Sheet 28 of 44 US 2015/0038552 A1 5 & s & g C: { : s 8.- : SSCO i k s y N wer - e-f Patent Application Publication Feb. 5, 2015 Sheet 29 of 44 US 2015/0038552 A1 Figure 21 fir-223** miR-223-i- Day 8 O 10 0 1 0 10 0 0 10° 10' 0 3 T Day 10 x -os essessee esses' serers six-y\x-xxxx 0 0 1 0 1 0 10 0 102 10 0 10 j is Day 2 10° 40' 0° . ." Day 14 Day 16 f s xssy wor-s-s-s-s-series--sex- syss-sr:-ex-rreross-rw-ser-s: 610 0 100 0 0 10° 10' 0. CCR3 a) Patent Application Publication Feb. 5, 2015 Sheet 30 of 44 US 2015/0038552 A1 Figure 22 A p = 0.91 miR-223 +/- miR-223 -f- p = 0.03 4. 2 miR-223 --- miR-223 -f- Patent Application Publication Feb. 5, 2015 Sheet 31 of 44 US 2015/0038552 A1 Figure 23 A Day 8 3-3** ri-3- - 17 RegulatedDown - 16 Up 3-YYYYYYYY Regulated Sy sy : & 8:888 s low T. tigh Patent Application Publication Feb. 5, 2015 Sheet 32 of 44 US 2015/0038552 A1 R s X s ***** Patent Application Publication Feb. 5, 2015 Sheet 33 of 44 US 2015/0038552 A1 Figure 23 C Day 12 R-223 iR-23: s xx SSSix SS Down Regulated & S: Patent Application Publication Feb. 5, 2015 Sheet 34 of 44 US 2015/0038552 A1 £Z?un61-) CJ Patent Application Publication Feb. 5, 2015 Sheet 35 of 44 US 2015/0038552 A1 ÞZ?un61-I Patent Application Publication Feb. 5, 2015 Sheet 36 of 44 US 2015/0038552 A1 Figure 25 A it as: siphages Seiysia Ceis Six Sis: ..

View Full Text

Details

  • File Type
    pdf
  • Upload Time
    -
  • Content Languages
    English
  • Upload User
    Anonymous/Not logged-in
  • File Pages
    88 Page
  • File Size
    -

Download

Channel Download Status
Express Download Enable

Copyright

We respect the copyrights and intellectual property rights of all users. All uploaded documents are either original works of the uploader or authorized works of the rightful owners.

  • Not to be reproduced or distributed without explicit permission.
  • Not used for commercial purposes outside of approved use cases.
  • Not used to infringe on the rights of the original creators.
  • If you believe any content infringes your copyright, please contact us immediately.

Support

For help with questions, suggestions, or problems, please contact us