Induced CYP3A4 expression in confluent Huh7 hepatoma cells as a result of decreased cell proliferation and subsequent PXR activation Louise Sivertsson, Irene Edebert, Margareta Porsmyr Palmertz, Magnus Ingelman-Sundberg and Etienne P.A. Neve Molecular Pharmacology Supplemental table 1. Genes that were differentially (p<0.05) up-regulated in confluent cells compared to control cells. Genes with FC > 2 are above the red line ProbeSetID GeneAccession GeneSymbol GeneDescription Mean FC p value 8100734 NM_001077 UGT2B17 UDP glucuronosyltransferase 2 family, polypeptid 436.02 6.42E-03 7995820 NM_005947 MT1B metallothionein 1B 48.48 1.05E-02 7983478 NM_032413 C15orf48 chromosome 15 open reading frame 48 46.24 4.59E-02 8147065 NM_173848 RALYL RALY RNA binding protein-like 44.98 5.30E-05 8100853 NM_000583 GC group-specific component (vitamin D binding prot 44.20 2.69E-02 8101874 NM_000667 ADH1A alcohol dehydrogenase 1A (class I), alpha polypep 43.71 2.17E-06 7940775 NM_004585 RARRES3 retinoic acid receptor responder (tazarotene induce 40.49 2.20E-04 7904429 AF252254 LOC128102 3-beta-hydroxysteroid dehydrogenase, tissue-type 36.97 1.37E-03 8089145 NM_015429 ABI3BP ABI family, member 3 (NESH) binding protein 36.57 2.04E-02 8141328 NM_000777 CYP3A5 cytochrome P450, family 3, subfamily A, polypept31.14 4.48E-03 7970949 NM_005584 MAB21L1 mab-21-like 1 (C. elegans) 30.83 3.03E-05 7904726 NM_006472 TXNIP thioredoxin interacting protein 30.72 8.57E-04 8101893 NM_000669 ADH1C alcohol dehydrogenase 1C (class I), gamma polype 26.88 9.95E-04 7933341 NM_019893 ASAH2 N-acylsphingosine amidohydrolase (non-lysosoma 26.68 1.25E-02 8100737 NM_001076 UGT2B15 UDP glucuronosyltransferase 2 family, polypeptid 26.02 6.24E-03 8100746 NM_001076 UGT2B15 UDP glucuronosyltransferase 2 family, polypeptid 26.02 6.24E-03 8035095 NM_021187 CYP4F11 cytochrome P450, family 4, subfamily F, polypept25.97 9.50E-05 7933597 NM_019893 ASAH2 N-acylsphingosine amidohydrolase (non-lysosoma 24.87 1.05E-02 8100760 NM_024743 UGT2A3 UDP glucuronosyltransferase 2 family, polypeptid 24.31 1.26E-02 8086457 NM_004391 CYP8B1 cytochrome P450, family 8, subfamily B, polypept23.81 3.59E-02 8150920 NM_000780 CYP7A1 cytochrome P450, family 7, subfamily A, polypept22.77 4.31E-05 8112053 NM_152623 CDC20B cell division cycle 20 homolog B (S. cerevisiae) 22.55 5.55E-06 7913896 NM_001004434 SLC30A2 solute carrier family 30 (zinc transporter), member 22.12 4.66E-03 8140650 NM_012431 SEMA3E sema domain, immunoglobulin domain (Ig), short 20.43 1.19E-02 8007429 NM_000151 G6PC glucose-6-phosphatase, catalytic subunit 20.26 1.98E-02 7954356 NM_006446 SLCO1B1 solute carrier organic anion transporter family, me19.97 1.86E-06 8133876 NM_001001548 CD36 CD36 molecule (thrombospondin receptor) 19.88 1.57E-02 8077192 NM_000482 APOA4 apolipoprotein A-IV 18.91 5.65E-04 8171449 NM_021804 ACE2 angiotensin I converting enzyme (peptidyl-dipeptid18.90 3.34E-03 7951859 NM_000482 APOA4 apolipoprotein A-IV 18.79 7.05E-04 8126750 NM_021572 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 18.03 9.98E-03 8109629 NM_001040442 FABP6 fatty acid binding protein 6, ileal 17.80 9.16E-03 8159491 NM_000606 C8G complement component 8, gamma polypeptide 16.87 1.81E-03 8056151 NM_007366 PLA2R1 phospholipase A2 receptor 1, 180kDa 16.37 7.68E-03 8072735 NM_145343 APOL1 apolipoprotein L, 1 15.90 1.82E-03 8098654 NM_000892 KLKB1 kallikrein B, plasma (Fletcher factor) 1 15.53 7.27E-03 8095402 NM_024743 UGT2A3 UDP glucuronosyltransferase 2 family, polypeptid 15.52 4.25E-03 8140971 NM_152703 SAMD9L sterile alpha motif domain containing 9-like 15.33 3.96E-03 8009145 NM_030779 KCNH6 potassium voltage-gated channel, subfamily H (eag14.93 2.99E-03 8111864 NM_001115131 C6 complement component 6 14.74 2.67E-02 7981998 NR_003339 SNORD116-25 small nucleolar RNA, C/D box 116-25 14.00 2.27E-02 8117304 NM_005495 SLC17A4 solute carrier family 17 (sodium phosphate), memb 13.87 3.59E-03 7916526 NM_000066 C8B complement component 8, beta polypeptide 13.45 1.80E-02 8090180 NM_033049 MUC13 mucin 13, cell surface associated 13.33 2.59E-04 8083301 NM_004617 TM4SF4 transmembrane 4 L six family member 4 13.08 3.06E-02 7904396 NM_001005783 HAO2 hydroxyacid oxidase 2 (long chain) 12.92 3.03E-03 7964183 NM_013267 GLS2 glutaminase 2 (liver, mitochondrial) 12.92 1.07E-03 8108006 NM_052971 LEAP2 liver expressed antimicrobial peptide 2 12.85 3.92E-03 8108251 NR_002713 NPY6R neuropeptide Y receptor Y6 (pseudogene) 12.78 1.62E-02 7919800 NM_004079 CTSS cathepsin S 12.59 1.14E-03 7940341 NM_206893 MS4A10 membrane-spanning 4-domains, subfamily A, mem12.49 4.48E-03 8049297 NR_003008 SCARNA5 small Cajal body-specific RNA 5 12.30 7.68E-04 8092735 NM_207316 TMEM207 transmembrane protein 207 11.91 2.25E-06 8059525 NM_024795 TM4SF20 transmembrane 4 L six family member 20 11.89 3.91E-02 8018975 NM_005567 LGALS3BP lectin, galactoside-binding, soluble, 3 binding prot 11.84 3.78E-03 8165575 NM_001098537 PNPLA7 patatin-like phospholipase domain containing 7 11.62 1.41E-06 7935169 NM_000770 CYP2C8 cytochrome P450, family 2, subfamily C, polypept11.52 1.59E-02 7911754 NM_003820 TNFRSF14 tumor necrosis factor receptor superfamily, membe 11.48 3.86E-03 8141374 NM_001185 AZGP1 alpha-2-glycoprotein 1, zinc-binding 11.48 3.29E-02 8062927 NM_002638 PI3 peptidase inhibitor 3, skin-derived 11.27 3.58E-02 7942717 NM_000260 MYO7A myosin VIIA 11.17 1.15E-04 8075483 NM_052880 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 11.01 9.39E-04 7904408 NM_000198 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- an 10.97 1.29E-02 8173444 NM_000206 IL2RG interleukin 2 receptor, gamma (severe combined im 10.92 6.57E-03 8112920 NM_130767 ACOT12 acyl-CoA thioesterase 12 10.84 8.23E-04 8020037 BC040542 KIAA0802 KIAA0802 10.80 2.08E-03 8118409 NM_007293 C4A complement component 4A (Rodgers blood group 10.61 4.84E-02 8118455 NM_007293 C4A complement component 4A (Rodgers blood group 10.61 4.84E-02 8179399 NM_007293 C4A complement component 4A (Rodgers blood group 10.61 4.84E-02 8134655 NM_022820 CYP3A43 cytochrome P450, family 3, subfamily A, polypept10.54 3.52E-02 7989951 ENST00000380078LOC100131796LP2570 10.43 4.10E-04 7904421 NM_000862 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- an 10.34 1.03E-04 8027760 NM_005031 FXYD1 FXYD domain containing ion transport regulator 1 10.19 1.37E-02 8045795 NM_002239 KCNJ3 potassium inwardly-rectifying channel, subfamily J 10.17 2.91E-03 7917503 NM_018284 GBP3 guanylate binding protein 3 10.14 5.69E-03 8092169 NM_003810 TNFSF10 tumor necrosis factor (ligand) superfamily, membe 9.84 1.30E-03 8065948 NR_024377 FER1L4 fer-1-like 4 (C. elegans) 9.80 1.08E-02 7904414 NM_000862 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- an 9.80 7.25E-05 8056583 NM_003742 ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), 9.74 7.40E-03 8008900 NM_000717 CA4 carbonic anhydrase IV 9.45 1.17E-02 8137483 AK131514 FLJ16734 hypothetical LOC641928 9.45 5.26E-03 8055314 NM_144586 LYPD1 LY6/PLAUR domain containing 1 9.42 7.39E-05 8136709 NR_003715 LOC93432 maltase-glucoamylase-like pseudogene 9.34 1.57E-02 7945169 NM_138788 TMEM45B transmembrane protein 45B 9.34 1.09E-02 7951853 NM_052968 APOA5 apolipoprotein A-V 9.28 1.32E-02 7988350 NM_014080 DUOX2 dual oxidase 2 9.22 1.97E-02 8080466 NM_002217 ITIH3 inter-alpha (globulin) inhibitor H3 8.98 1.30E-03 8135015 AB038783 MUC3B mucin 3B, cell surface associated 8.87 4.20E-04 8145097 NM_018068 PIWIL2 piwi-like 2 (Drosophila) 8.87 3.49E-04 8065920 NR_024377 FER1L4 fer-1-like 4 (C. elegans) 8.75 1.97E-02 8156770 NM_024642 GALNT12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide 8.67 2.04E-04 8020551 NM_198129 LAMA3 laminin, alpha 3 8.44 7.99E-04 7986350 NM_183376 ARRDC4 arrestin domain containing 4 8.41 4.58E-03 7917516 NM_002053 GBP1 guanylate binding protein 1, interferon-inducible, 6 8.29 1.56E-04 7970793 NM_181785 SLC46A3 solute carrier family 46, member 3 8.23 2.62E-02 8022559 NM_173505 ANKRD29 ankyrin repeat domain 29 8.20 2.04E-02 8141016 NM_006528 TFPI2 tissue factor pathway inhibitor 2 8.07 1.09E-03 8095663 NM_001133 AFM afamin 8.05 1.25E-02 8119782 NM_006672 SLC22A7 solute carrier family 22 (organic anion transporter) 7.99 1.14E-03 8075865 NM_153609 TMPRSS6 transmembrane protease, serine 6 7.96 4.17E-03 8023598 NM_173557 RNF152 ring finger protein 152 7.80 4.29E-03 8107909 NM_003059 SLC22A4 solute carrier family 22 (organic cation/ergothione 7.64 1.60E-03 7937782 NM_139022 TSPAN32 tetraspanin 32 7.57 1.87E-02 8102328 NM_000204 CFI complement factor I 7.49 1.40E-02 7917532 NM_004120 GBP2 guanylate binding protein 2, interferon-inducible 7.48 2.29E-03 8009913 NR_003587 MYO15B myosin XVB pseudogene 7.43 9.34E-04 8077198 BC057848 FLJ43315 similar to Asparagine synthetase [glutamine-hydro7.42 3.62E-02 8070467 NM_001135099 TMPRSS2 transmembrane protease, serine 2 7.35 3.54E-03 7986755 NM_019066 MAGEL2 MAGE-like 2 7.22 2.34E-02 8081925 NM_003889 NR1I2 nuclear receptor subfamily 1, group I, member 2 7.21 1.60E-03 8095390 NM_001075 UGT2B10 UDP glucuronosyltransferase 2 family, polypeptid 7.14 9.13E-04 8081298 NM_032787 GPR128 G protein-coupled receptor 128 7.09 1.75E-03 8050115 AK127578 C2orf46 chromosome 2 open reading frame 46 7.08 1.54E-03 8035083 NM_001082 CYP4F2 cytochrome P450, family 4, subfamily F, polypept 7.04 6.78E-04 8098671 NM_000128 F11 coagulation factor XI 6.84 5.50E-03 8011114 NR_028076 SCARF1 scavenger receptor class F, member 1 6.81 3.15E-04 7917548 NM_207398 GBP7 guanylate binding protein 7 6.79 1.02E-03 7980908 NM_006329 FBLN5 fibulin 5 6.76 3.32E-04 8040960 NM_001486 GCKR glucokinase (hexokinase