THE RESEARCH LEADING TO THESE RESULTS HAS RECEIVED FUNDING FROM THE EUROPEAN UNION’S SEVENTH FRAMEWORK PROGRAM (FP7/2007-2013) FOR CRYSTAL – CRITICAL SYSTEM ENGINEERING ACCELERATION JOINT UNDERTAKING UNDER GRANT AGREEMENT N° 332830 AND FROM SPECIFIC NATIONAL PROGRAMS AND / OR FUNDING AUTHORITIES. CRitical SYSTem Engineering AcceLeration State of the art for Healthcare ontology D407.010 State of the art for D407.010 Healthcare ontology DOCUMENT INFORMATION Project CRYSTAL Grant Agreement No. ARTEMIS-2012-1-332830 Deliverable Title State of the art for Healthcare ontology Deliverable No. D407.010 Dissemination Level PU Nature R Document Version V1.0 Date 2013-01-31 Contact M.A. van Bekkum Organization TNO Phone +31610968792 E-Mail [email protected] Version Nature Date Page V1.0 R 2014-01-31 2 of 54 State of the art for D407.010 Healthcare ontology AUTHORS TABLE Name Company E-Mail L. Oosterheert (lead editor) TNO [email protected] M.A. van Bekkum TNO [email protected] A.M. Farcasi TU/e [email protected] R. de Juan Marín ITI [email protected] E. Lluna ITI [email protected] R. Albers Philips [email protected] H.E.P. Cruts Philips [email protected] D. Segers Barco [email protected] T. van Velzen (external reviewer) IBM [email protected] T. Karbe (external reviewer) TU Berlin [email protected] CHANGE HISTORY Pages Version Date Reason for Change Affected 0.1 18-11-2013 Creation of Table of Contents (TNO) All Added preliminary content of chapters, first version of long 0.11 06-12-2013 7-13, Annex I list (TNO) 0.12 12-12-2013 Added action points for project partners (TNO) 7-13 0.2 23-12-2013 Chapters 3.1, 3.2 (TU/e), added standards to long list (ITI) 9-14, Annex I Elaboration on chapter 3.2 (TU/e, TNO), chapters 3.3, 4 0.3 13-01-2014 13-21, Annex I (TNO), added standards to long list (Barco, Philips) 0.9 20-01-2014 Chapters 5, 6, finalized document for review (TNO) All 1.0 31-01-2014 Chapters 1, 2, 4.1.1, 6, process review comments (TNO) All Version Nature Date Page V1.0 R 2014-01-31 3 of 54 State of the art for D407.010 Healthcare ontology CONTENT 1 INTRODUCTION ...................................................................................................................................................... 6 1.1 ROLE OF DELIVERABLE ....................................................................................................................................... 6 1.2 RELATIONSHIP TO OTHER CRYSTAL DOCUMENTS .......................................................................................... 6 1.3 STRUCTURE OF THIS DOCUMENT ....................................................................................................................... 7 2 SCOPE DEFINITION ............................................................................................................................................... 8 2.1 EXTENDING IOS ................................................................................................................................................. 9 2.2 INPUT FROM SP4 USE CASES .......................................................................................................................... 10 3 INTRODUCTION TO SEMANTICS ..................................................................................................................... 12 3.1 CLASSIFICATION OF SEMANTIC MODELS ........................................................................................................... 12 3.1.1 List ............................................................................................................................................................ 13 3.1.2 Taxonomy ................................................................................................................................................ 14 3.1.3 Thesaurus ............................................................................................................................................... 15 3.1.4 Ontology .................................................................................................................................................. 16 3.2 BASICS OF ONTOLOGIES ................................................................................................................................... 17 3.3 APPLICATION OF ONTOLOGIES IN THE HEALTHCARE SYSTEMS ENGINEERING DOMAIN ................................... 19 3.3.1 Example application from use cases ................................................................................................... 20 4 OVERVIEW OF STANDARDS WITHIN HEALTHCARE DOMAIN ............................................................... 22 4.1 LONG-LIST ......................................................................................................................................................... 22 4.1.1 Statistics of long-list ............................................................................................................................... 23 4.2 SHORT-LIST....................................................................................................................................................... 24 5 ANALYSIS OF SHORT-LIST............................................................................................................................... 26 5.1 SCOPE............................................................................................................................................................... 26 5.2 QUALITY MEASURES AND SEMANTIC LEVEL ...................................................................................................... 27 6 EVALUATION ........................................................................................................................................................ 28 7 TERMS, ABBREVIATIONS AND DEFINITIONS ............................................................................................. 29 8 REFERENCES ....................................................................................................................................................... 30 9 ANNEX .................................................................................................................................................................... 31 ANNEX I: LONG-LIST OF STANDARDS WITHIN THE HEALTHCARE DOMAIN .................................................................... 32 ANNEX II: DETAILS ON QUALITY MEASURES OF SHORT-LIST ........................................................................................ 54 Version Nature Date Page V1.0 R 2014-01-31 4 of 54 State of the art for D407.010 Healthcare ontology Content of Tables Figure 1-1: Research method ............................................................................................................................. 7 Figure 2-1: Scope of work package 4.7 .............................................................................................................. 8 Figure 2-2: Relation between semantics of domains and IOS ......................................................................... 10 Figure 2-3: Use cases versus domain ontology ............................................................................................... 10 Figure 3-1: Power and complexity of controlled vocabularies .......................................................................... 13 Figure 3-2: General structure of a semantic model - List ................................................................................. 13 Figure 3-3: General structure of a semantic model - Taxonomy ...................................................................... 14 Figure 3-4: General structure of a semantic model - Thesaurus ...................................................................... 15 Figure 3-5: General structure of a semantic model - Ontology ........................................................................ 16 Figure 3-6: Example of a vehicle ontology [Madsen B.N., 2009] ..................................................................... 17 Figure 3-7: V-Model for system engineering .................................................................................................... 19 Figure 3-8: Impact analysis of design changes [Cruts, H.E.P., 2013] .............................................................. 21 Figure 4-1: Topics of standards on long-list ..................................................................................................... 22 Figure 5-1: Standards of short-list plotted at semantic level and year of last update* ..................................... 27 Content of Figures Table 3-1: Application of ontologies within the engineering cycle .................................................................... 20 Table 4-1: Semantic levels of standards on the long-list .................................................................................. 23 Table 4-2: Top five of topics on the long-list ..................................................................................................... 23 Table 4-3: Short-list .......................................................................................................................................... 24 Table 4-4: Comparison between MDD, standards on short-list and FDA ........................................................ 25 Table 5-1: Classification of standards on short-list (inspired by [Gerber, C., 2008]) ........................................ 26 Table 7-1: Terms, Abbreviations