Table SII. Differentially expressed microRNAs in the dataset from The Cancer Genome Atlas. Genesymbol LogFC P-value FDR A1CF -2.10229 2.084602×10^-3 7.08728×10^-3 A4GALT -3.52073 4.66×10^-28 2.42×10^-26 A4GNT -4.26856 3.96×10^-21 1.31×10^-19 AADAT 2.071161 1.88×10^-11 2.64×10^-10 ABCA12 2.015141 2.59912×10^-4 1.121563×10^-3 ABCA4 -5.49484 5.9×10^-61 1.29×10^-58 ABCA9 2.15609 7.66629×10^-3 2.1814238×10^-2 ABCA9-AS1 3.126405 8.61395×10^-4 3.253832×10^-3 ABCB1 -3.7445 6.92×10^-11 9.13×10^-10 ABCB10P1 2.984502 1.3629181×10^-2 3.5572807×10^-2 ABCB10P3 3.797105 1.7936677×10^-2 4.4878796×10^-2 ABCB4 2.732583 8.40693×10^-4 3.187454×10^-3 ABCC3 -3.89866 3.65×10^-28 1.91×10^-26 ABCC6P1 -2.13803 1.28×10^-6 8.98×10^-6 ABCC8 4.783716 4.87×10^-6 3.07×10^-5 ABCF2P2 3.646157 1.9174257×10^-2 4.7447767×10^-2 ABCG5 -2.23257 6.39×10^-17 1.5×10^-15 ABCG8 -3.03436 7.84×10^-14 1.41×10^-12 ABHD14B -2.08952 7.71×10^-22 2.69×10^-20 ABI3 -3.05056 9.76×10^-42 1.05×10^-39 ABO -3.74358 2.39×10^-24 9.89×10^-23 AC002127.2 4.687982 8.02447×10^-4 3.057116×10^-3 AC002310.2 2.024741 3.56781×10^-4 1.486288×10^-3 AC002351.1 4.648618 1.1547246×10^-2 3.0927155×10^-2 AC002368.1 3.130184 1.5645669×10^-2 3.9941757×10^-2 AC002401.4 -3.02059 7.25×10^-8 6.27×10^-7 AC002456.1 2.04042 2.31884×10^-3 7.775065×10^-3 AC002480.2 -3.4477 2.87×10^-13 4.87×10^-12 AC002480.3 -2.86235 4.84×10^-8 4.3×10^-7 AC002525.1 -2.16884 5.21×10^-6 3.26×10^-5 AC002563.1 -2.35933 1.97×10^-9 2.15×10^-8 AC003070.1 -2.11754 1.68×10^-7 1.38×10^-6 AC003070.2 -3.03071 2.53×10^-7 2.02×10^-6 AC003092.1 5.918868 3.94×10^-7 3.04×10^-6 AC003092.2 5.340477 1.98747×10^-4 8.80861×10^-4 AC003101.2 -2.33724 1.06×10^-5 6.22×10^-5 AC003659.1 3.749959 4.862572×10^-3 1.4804968×10^-2 AC003984.1 -6.75936 1.73×10^-38 1.63×10^-36 AC003985.2 5.811645 7.101381×10^-3 2.0468623×10^-2 AC004023.1 5.302541 1.76×10^-5 9.91×10^-5 AC004054.1 -2.15524 4.86×10^-5 2.47862×10^-4 AC004066.2 -2.76719 4.57×10^-5 2.3449×10^-4 AC004080.2 3.992392 2.9×10^-6 1.91×10^-5 AC004080.5 2.283856 5.311747×10^-3 1.5952964×10^-2 AC004080.6 3.169931 2.81×10^-5 1.51245×10^-4 AC004149.1 4.335929 9.28×10^-9 9.21×10^-8 AC004233.2 3.28088 1.1294353×10^-2 3.0371285×10^-2 AC004264.1 -2.74106 6.19×10^-11 8.21×10^-10 AC004408.2 4.931188 9.89×10^-6 5.84×10^-5 AC004453.2 2.356049 4.97122×10^-4 1.995655×10^-3 AC004466.1 -2.24489 6.2×10^-15 1.23×10^-13 AC004801.5 6.383665 2.76×10^-11 3.81×10^-10 AC004828.1 -2.13332 4.5629×10^-4 1.848223×10^-3 AC004836.1 2.181267 4.05637×10^-3 1.2648828×10^-2 AC004862.1 -2.08326 5.739777×10^-3 1.7053234×10^-2 AC004870.1 -4.226 5.39×10^-9 5.57×10^-8 AC004870.4 -2.40248 1.009005×10^-3 3.739164×10^-3 AC004917.1 -2.90511 6.74×10^-5 3.32892×10^-4 AC005009.1 2.705166 1.0865106×10^-2 2.9414819×10^-2 AC005009.2 2.620424 5.460372×10^-3 1.6319561×10^-2 AC005041.2 -3.46939 3.16×10^-12 4.84×10^-11 AC005041.3 3.180726 5.38×10^-6 3.36×10^-5 AC005050.1 -2.36774 3.48×10^-5 1.83256×10^-4 AC005062.1 -2.26603 3.11×10^-6 2.03×10^-5 AC005077.2 2.745935 5.498513×10^-3 1.6418339×10^-2 AC005077.4 2.796308 1.75275×10^-4 7.86866×10^-4 AC005082.1 -3.10576 8.12×10^-7 5.92×10^-6 AC005083.1 -5.34732 1.03×10^-27 5.26×10^-26 AC005208.1 -4.23282 3.77×10^-13 6.31×10^-12 AC005224.4 2.665221 8.388175×10^-3 2.357545×10^-2 AC005225.2 -3.46863 5.31×10^-21 1.73×10^-19 AC005237.1 -3.26347 5.13×10^-11 6.88×10^-10 AC005252.3 -3.72694 1.42189×10^-4 6.52329×10^-4 AC005274.1 -2.11342 1.72×10^-7 1.41×10^-6 AC005281.1 -5.89546 6.57×10^-20 1.97×10^-18 AC005291.2 3.38238 1.9432102×10^-2 4.800296×10^-2 AC005307.1 2.987792 1.7087×10^-4 7.68784×10^-4 AC005336.3 6.168811 5.82809×10^-4 2.297929×10^-3 AC005355.2 -2.03485 9.66×10^-5 4.60235×10^-4 AC005381.1 2.030927 2.400682×10^-3 8.016527×10^-3 AC005394.1 4.153471 6.147786×10^-3 1.8074006×10^-2 AC005487.1 -2.81741 1.1×10^-5 6.45×10^-5 AC005518.1 4.492284 1.387275×10^-3 4.954866×10^-3 AC005537.1 4.081751 2.03×10^-5 1.12688×10^-4 AC005550.2 5.328046 1.194205×10^-3 4.336626×10^-3 AC005609.1 3.911928 6.380732×10^-3 1.8666691×10^-2 AC005609.5 4.015418 8.73×10^-7 6.31×10^-6 AC005616.1 -5.29994 1.62×10^-35 1.28×10^-33 AC005746.2 -2.0237 4.25×10^-6 2.7×10^-5 AC005746.3 -2.12153 2.87×10^-6 1.89×10^-5 AC005753.1 -3.21577 2.63×10^-14 4.93×10^-13 AC005759.1 -2.46663 5.91×10^-11 7.87×10^-10 AC005821.1 -2.99749 1.28×10^-14 2.45×10^-13 AC005840.4 -2.38708 1.87×10^-9 2.06×10^-8 AC005912.2 -2.19802 7.37×10^-8 6.36×10^-7 AC005920.1 -4.28616 2.99×10^-24 1.23×10^-22 AC005920.3 -4.72388 6.85×10^-20 2.05×10^-18 AC006019.1 3.871232 1.453483×10^-3 5.160517×10^-3 AC006019.2 3.374852 1.23517×10^-4 5.74427×10^-4 AC006019.3 2.988347 1.2676475×10^-2 3.3520175×10^-2 AC006042.1 -3.12235 4.2×10^-16 9.27×10^-15 AC006206.1 6.883545 3.04968×10^-4 1.2942×10^-3 AC006206.2 10.22649 9.72×10^-7 6.97×10^-6 AC006238.1 -2.86008 9.16×10^-15 1.78×10^-13 AC006262.1 3.989411 1.651156×10^-2 4.1807002×10^-2 AC006273.1 -4.03391 2.74×10^-33 1.91×10^-31 AC006305.1 5.018016 8.91×10^-13 1.44×10^-11 AC006305.2 3.524275 1.8642008×10^-2 4.636883×10^-2 AC006329.2 3.247618 2.1×10^-5 1.16437×10^-4 AC006504.7 2.93004 5.56191×10^-4 2.204431×10^-3 AC006557.1 2.381601 1.85×10^-6 1.26×10^-5 AC006557.5 3.736473 1.22×10^-10 1.56×10^-9 AC006600.2 2.778197 1.535965×10^-3 5.418573×10^-3 AC006942.1 -2.39738 3.43×10^-23 1.33×10^-21 AC006994.2 -4.24761 8.01×10^-17 1.87×10^-15 AC007009.1 -2.05776 8.52×10^-6 5.1×10^-5 AC007014.1 -2.02222 2.3×10^-6 1.54×10^-5 AC007029.1 -2.16986 1.44×10^-6 1.01×10^-5 AC007036.1 -2.3336 5.01×10^-9 5.2×10^-8 AC007091.1 5.005086 1.8323549×10^-2 4.5704964×10^-2 AC007114.1 -2.61738 4.64×10^-21 1.52×10^-19 AC007128.1 4.018742 1.0226699×10^-2 2.7908691×10^-2 AC007128.2 4.895993 9.500858×10^-3 2.6174357×10^-2 AC007179.2 4.019319 1.0132081×10^-2 2.7692591×10^-2 AC007216.1 -2.59122 4.19×10^-10 5.07×10^-9 AC007255.1 -2.93772 3.85×10^-21 1.28×10^-19 AC007255.2 -2.60535 2.83×10^-5 1.52491×10^-4 AC007285.2 2.136946 8.32×10^-6 4.99×10^-5 AC007319.1 -2.0871 2.469112×10^-3 8.223361×10^-3 AC007336.1 -2.91326 1.22×10^-11 1.75×10^-10 AC007342.5 -2.81587 8.76×10^-7 6.34×10^-6 AC007342.9 -2.65832 1.42×10^-5 8.15×10^-5 AC007402.1 4.747235 1.1335105×10^-2 3.0451687×10^-2 AC007403.1 2.765346 1.7470499×10^-2 4.3891129×10^-2 AC007406.1 -4.50798 1.15×10^-17 2.91×10^-16 AC007406.2 -2.23247 2.65355×10^-4 1.142504×10^-3 AC007406.3 2.349801 1.53883×10^-4 7.0017×10^-4 AC007406.4 -2.40814 1.22×10^-9 1.38×10^-8 AC007422.2 4.308638 1.104649×10^-3 4.055549×10^-3 AC007424.1 2.696268 1.0919419×10^-2 2.9544105×10^-2 AC007490.1 -2.32388 6.89×10^-5 3.39501×10^-4 AC007495.1 2.48757 1.1382698×10^-2 3.0552056×10^-2 AC007546.1 -2.29885 5.48×10^-12 8.18×10^-11 AC007598.1 -2.40529 3.38×10^-8 3.09×10^-7 AC007598.2 -2.42376 2.85×10^-9 3.05×10^-8 AC007598.3 -2.32029 2.1×10^-12 3.28×10^-11 AC007601.1 -2.60758 2.12×10^-18 5.7×10^-17 AC007656.1 2.058266 7.313514×10^-3 2.0987856×10^-2 AC007728.2 -2.05328 1.2×10^-7 1×10^-6 AC007792.1 -2.81983 8.66×10^-7 6.27×10^-6 AC007834.1 -3.11891 7.38×10^-9 7.45×10^-8 AC007834.2 -2.06993 1.3×10^-6 9.15×10^-6 AC007848.1 8.343259 1.57×10^-5 8.88×10^-5 AC007848.2 7.381106 7.98×10^-11 1.04×10^-9 AC007849.1 -3.84593 1.51×10^-13 2.64×10^-12 AC007879.3 3.157692 1.8753739×10^-2 4.6603812×10^-2 AC007881.3 -2.01909 6.16×10^-7 4.6×10^-6 AC007906.2 -7.04153 1.63×10^-63 3.85×10^-61 AC007919.1 -3.78725 2.38×10^-13 4.09×10^-12 AC007919.2 -3.39599 2.68×10^-10 3.31×10^-9 AC007923.4 -2.97075 3.98×10^-7 3.06×10^-6 AC007938.2 2.77677 1.06×10^-5 6.23×10^-5 AC007938.3 2.641298 5×10^-6 3.14×10^-5 AC007953.2 6.962469 7.986023×10^-3 2.2597776×10^-2 AC007969.2 2.989799 1.56114×10^-4 7.08986×10^-4 AC007993.1 -3.18619 1.21×10^-14 2.33×10^-13 AC007993.2 -2.75756 6.27×10^-8 5.48×10^-7 AC008013.3 2.544322 5.162095×10^-3 1.5578452×10^-2 AC008033.3 -2.78088 9.51×10^-8 8.05×10^-7 AC008056.1 2.134005 1.9113321×10^-2 4.7345407×10^-2 AC008060.1 4.944455 6.387279×10^-3 1.8680925×10^-2 AC008060.4 5.78656 5.968412×10^-3 1.7628333×10^-2 AC008080.2 2.349709 1.2017539×10^-2 3.203601×10^-2 AC008105.2 -2.07826 8.37×10^-9 8.37×10^-8 AC008115.1 4.597 2.86294×10^-4 1.222592×10^-3 AC008115.2 3.196185 8.01309×10^-4 3.053383×10^-3 AC008268.1 3.696722 4.846393×10^-3 1.4766164×10^-2 AC008278.2 3.600756 2.48×10^-5 1.3499×10^-4 AC008392.1 2.986546 7.631857×10^-3 2.1733836×10^-2 AC008403.3 -2.50204 7.7×10^-9 7.76×10^-8 AC008415.1 2.14193 1.7477975×10^-2 4.3904212×10^-2 AC008432.1 3.75516 1.8961215×10^-2 4.7031833×10^-2 AC008448.1 4.981802 2.42761×10^-4 1.054844×10^-3 AC008464.1 4.35478 1.3047214×10^-2 3.4319981×10^-2 AC008539.1 4.508784 1.448011×10^-2 3.7410335×10^-2 AC008554.1 -5.05146 8.21×10^-32 5.28×10^-30 AC008555.3 3.855288 7.463121×10^-3 2.1342817×10^-2 AC008556.1 -2.58536 1.9×10^-10 2.39×10^-9 AC008588.1 2.860875 2.156055×10^-3 7.294968×10^-3 AC008591.1 3.99503 2.740058×10^-3 9.010997×10^-3 AC008592.3 -3.15256 6.16×10^-30 3.52×10^-28 AC008592.4 -3.82702 4.27×10^-18 1.12×10^-16 AC008649.1 3.930562 4.46278×10^-4 1.810891×10^-3 AC008649.2 -2.44333 9.93×10^-10 1.14×10^-8 AC008667.1 2.511317 1.51×10^-7 1.24×10^-6 AC008667.3 3.924527 2.67×10^-8 2.48×10^-7 AC008667.4 5.439898 3.5×10^-6 2.27×10^-5 AC008676.1 -3.24267 1.04×10^-33 7.56×10^-32 AC008738.1 -2.99087 1.86×10^-6 1.27×10^-5 AC008739.2 2.874794 1.72×10^-8 1.65×10^-7 AC008750.1 2.389907 7.9191×10^-4 3.021139×10^-3 AC008750.2 3.762549 1.8×10^-6 1.23×10^-5 AC008750.7 4.311419 1.32×10^-7 1.1×10^-6 AC008759.3 -2.04966 3.23499×10^-4 1.362681×10^-3 AC008760.1 -3.88194 6.74×10^-31 4.07×10^-29 AC008763.1 -2.2454 2.14×10^-7 1.73×10^-6 AC008781.1 -2.87236 1.11×10^-17 2.82×10^-16 AC008781.2 -2.18567 8.05×10^-9 8.09×10^-8 AC008870.3 2.184133 2.786662×10^-3 9.144834×10^-3 AC009005.1 2.710133 8.5×10^-6