(12) Patent Application Publication (10) Pub. No.: US 2017/0081655 A1 Gundling (43) Pub

(12) Patent Application Publication (10) Pub. No.: US 2017/0081655 A1 Gundling (43) Pub

US 20170081655A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2017/0081655 A1 Gundling (43) Pub. Date: Mar. 23, 2017 (54) PURIFICATION OF NUCLEIC ACIDS USING Publication Classification COPPER-TITANIUM OXDES (51) Int. Cl. (71) Applicant: ABBOTT MOLECULAR INC. Des CI2N IS/TO (2006.01) Plaines, IL (US) (52) U.S. Cl. CPC ................................ CI2N 15/1006 (2013.01) (72) Inventor: Gerard J. Gundling, Des Plaines, IL (US) (21) Appl. No.: 15/209,318 (57) ABSTRACT (22) Filed: Jul. 13, 2016 O O The present disclosure relates to systems and methods for Related U.S. Application Data purifying nucleic acid. In particular, the present disclosure (60) Provisional application No. 62/192,444, filed on Jul. relates to systems and methods for purifying nucleic acids 14, 2015. using metal or metal oxide compositions. Patent Application Publication Mar. 23, 2017. Sheet 2 of 76 US 2017/0081655 A1 FE8 G, C sixxxttituitixay:e 8:8:8: 3:3:::::::::S:8:::::::::::::3:38:3:2 si---------------------------- B: , Scie G. : 88.8883: 888 8::::::: 3:38, is: 88: Patent Application Publication Mar. 23, 2017. Sheet 3 of 76 US 2017/0081655 A1 F. A 8-O4 2B 8-1 1B 8-4 B 8-4 2B 8-14.3B 8-4 AB mmp F. 8 O4. 2B 8- B 8-4 B 8-4 2B 8-4 3B 8-14 4B mmp Patent Application Publication Mar. 23, 2017. Sheet 4 of 76 US 2017/0081655 A1 F.G. 8 8-04. 2B 8- B 8-4 B 8-14. 2B 8-14 3B 8-4 AB mmp F.G. 8-O4 2B 8-1 B 8-1A, 1B 8-4 2B 8-14 3B 8-14. 4B mmp Patent Application Publication Mar. 23, 2017. Sheet 5 of 76 US 2017/0081655 A1 F8 2. Culi-OOP Ci-O99 Ci-8- MMP Culoop Cutloop CuTiogp " Cut-sp MMP Patent Application Publication Mar. 23, 2017. Sheet 6 of 76 US 2017/0081655 A1 FE8, 8. Ci-OOP C-09P C-18 MMP F.C. Ci-OOP Ci-O9P Cui-18 MMP Patent Application Publication Mar. 23, 2017. Sheet 7 of 76 US 2017/0081655 A1 FE8, SA, isixtsstiaisayas 88:iii; S: 8,888 :33:::::::::::::::::::::: F. 33. 0.25. irS. O.2no { 0.15 - O. : rmamma-----------------mamma-----------------ir 25 28 27 28 29 3. 3. 32 33 CN Patent Application Publication Mar. 23, 2017. Sheet 8 of 76 US 2017/0081655 A1 FG, C &isixttitutikaiy: 8883:38 3:2:3:5:8:S:3:38:2. 8,888 8 E 88.88:388 88: 83.8333;; 33.38.88x i 8:::::::::::88-8: 3. t s: Basessed 3 23 Scie FG, 20 20.2 20 4 20.6 20.8 2, 22 214 as 2.8 22 Patent Application Publication Mar. 23, 2017. Sheet 9 of 76 US 2017/0081655 A1 G. $.A. :::::-8383 ::::::::3: A Pairs MP ukey-Kramer O5 F. : Tukey-Kranner 0.05 Patent Application Publication Mar. 23, 2017. Sheet 10 of 76 US 2017/0081655 A1 E. : C A Pais ukey-Kramer O.05 FG, 38 Tukey-Kramer O.C.5 Patent Application Publication Mar. 23, 2017. Sheet 11 of 76 US 2017/0081655 A1 F. SA sixtstikaiy: 88.88:S x 8:3:3:3:33:3: Bissy is a 8,838 isitix8833; 3:38.*::$3.33333333i:::::::::: 3:8 88.88:S 3:2:3:2:3:3:3:8:8:38:33:2 88 3:8: Patent Application Publication Mar. 23, 2017. Sheet 12 of 76 US 2017/0081655 A1 F.6A forff:fffff.co.iisguisvili?ite rfrnarxirs8 arxx-xick-stricisroctors8 8 i t . ; 2 3 s is . goixa-i-NS-N--. - cry) sirr.. s c asa Sample D F8, 63 s 3 t se sw Sampie D Patent Application Publication Mar. 23, 2017. Sheet 14 of 76 US 2017/0081655 A1 F. A F.G. B. Patent Application Publication Mar. 23, 2017. Sheet 15 of 76 US 2017/0081655 A1 F. G. F. Patent Application Publication Mar. 23, 2017. Sheet 16 of 76 US 2017/0081655 A1 SA 8.83 Patent Application Publication Mar. 23, 2017. Sheet 17 of 76 US 2017/0081655 A1 F. 88 FG, 8 Patent Application Publication Mar. 23, 2017. Sheet 18 of 76 US 2017/0081655 A1 F. A F. B. Patent Application Publication Mar. 23, 2017. Sheet 19 of 76 US 2017/0081655 A1 FIG. 9C FIG. 9D Patent Application Publication Mar. 23, 2017. Sheet 20 of 76 US 2017/0081655 A1 F.G. 10A Abbott MultiAnalyze Version 5 O1 alpha Median SD 1 2 3 4 5 6 7 8 9 10 1112 Display Dye FAM 0.004 Ref. Dye ROx sy Current File: (82214 MMP PCR-8222O1413539 MC.csv Setup File: newHCVunlocked mat Plot Baselined v 8 7. We 53 E 5 6 C 26.62 MR 0.316 CN 29.94 CNA 31.60 ‘5 Width 3.2 Final 6.36 2H 1- Plot : Display O. : s issssss to: ssssssss:xxxx&xx:xxx:38: & an R. -1 l O 5 10 15 20 25 30 35 40 logy Cycle Zoom FG, 10B Abbott MultiAnalyze Version 5.01 alpha Median SD 1 2 3 4 5 6 F 8 9 O 1 12 Display Dye vic 0.0008 Ref. Dye ROx w Current File:O82214 MMP PCR 822O1413539 MC.csv Setup File: newHCVunlocked mat Plot Baselined y We 53 E. 5 C. 20.36 MR 0.231 PCN 21.67 CNA 23.78 With 3.51 Final 2.61 Plot : Display . O 5 10 15 20 25 30 35 40 logy Cycle Zoom Patent Application Publication Mar. 23, 2017. Sheet 21 of 76 US 2017/0081655 A1 FIG 11A 1509 16:08 1707' 1806 1905 Al Pairs mMCumMT Tukey-Kramer 0.05 F.G. 11B 15:09 16:08 17:07 18:06 mMCumMTi Patent Application Publication Mar. 23, 2017. Sheet 22 of 76 US 2017/0081655 A1 FIG. 11C 21.5 - 0 A 21 (5 . "" O T - i.e. - 20.5 wom L 2O a 1311 1410 1509 1608 17:07' 1806 1905 AH Pairs nMCumMT Tukey-Kramer O.05 FIG. 11D 15:09 16:08 17:07 18:06 mMCumMTi Patent Application Publication Mar. 23, 2017. Sheet 23 of 76 US 2017/0081655 A1 F.G. 12A Abbott MultiAnalyze Wersion 5.01 alpha Median SD 2 3 4 5 6 7 8 9 O 112 Display Dye FAM 0.0027 O. : Ref. Dye ROX w C C.O. Current File: 082714MMP PCR 8272O141 01943 MC.csv ; 2 Setup File: newHCVunlocked mat G Plot Baselined y 100% 8 Well 62 F 2 C 25.33 MR 0.306 FCN 28.32 CNA 30.03 o Width 3.11 Final 6.31 Plot Display Rs. log Y Cycle Zoom FIG. 12B Abbott MultiAnalyze Version 5.01 alpha Median SD 1 2 3 4 5 as 7 8 10 1112 Display Dye vic 0.001) (): ; C O Ref. Dye ROx w O. : Current File:O82714MMP PCR 8272O141 01943 MC.csv f Setup File: newHCWunlocked mat G ' Plot Baselined y 100% Well 62 F 2 C. 20.26 MR 0.234 FCN 21.61 PCNA 23.71 G; Width 3.52 Final 2.59 Plot Distry R. -0.5 O 5 10 15 20 25 30 35 40 w......: Log Y Zoon Patent Application Publication Mar. 23, 2017. Sheet 24 of 76 US 2017/0081655 A1 FIG. 13A s 2 ogs 12 o 144 168 192 216 240 All Pairs Tukey-Kramer FIG. 13B 24 O Tukey-Kramer O.O5 Patent Application Publication Mar. 23, 2017. Sheet 25 of 76 US 2017/0081655 A1 FIG. 13C 19 O9.6 12.. O 14.4 16.8 19.2 21.6 24.0 APairs mM CUT Tukey-Kramer 0.05 FIG. 13D A Pairs Tukey-Kramer O.05 Patent Application Publication Mar. 23, 2017. Sheet 26 of 76 US 2017/0081655 A1 F.G. 14A Abbott MultiAnalyze Version 5.01 alpha Median SD 1 2 3 4 5 is 7 8 9 1011 2 Display Dye FAM 00052 Ref. Dye ROx ty Current File:O82814mmp PCR 8282O1493053 MC.csv Setup File: newHIV mat Plot Baselined C 30,81 MR O,225 CN 30.78 FCNA 32.93 f With 3.13 Final 2.77 Plot ... Display Ref. 2O 25 30 log Y Cycle Zoom FG, 14B Abbott MultiAnalyze Wersion 5.01 alpha 1 2 3 4 5 6 7 8 9 10 1112 Median SD Display Dye Wic y O,OOO9 Ref. Dye ROx w Current File:O82814mm PCR 828O1493053 MC.csv Setup File: newHVmat Plot Baseline 24M 3. We 14 B 2.5 C. 20.51 2 MR 0.294 CN 20.69 15 FCNA 22.46 With 3.54 1 Final 2.83 0.5–- Plot O Display Ref. -0.5 l --- O 5 10 15 20 25 30 35 40 Log Y Zoon Patent Application Publication Mar. 23, 2017. Sheet 27 of 76 US 2017/0081655 A1 F. SA A rais Tukey-Krafter O.85 F. S. A Fairs Tukey-Kranner O.05 Patent Application Publication Mar. 23, 2017. Sheet 28 of 76 US 2017/0081655 A1 FG, SC Tukey-Kramer 8.05 F is A Pairs Tukey-Kramer OOS Patent Application Publication Mar. 23, 2017. Sheet 29 of 76 US 2017/0081655 A1 F. : {A &xixtuititasy: 88.88:S3 Ete:::::: $83.88. 8:Basessists isis: 3. G. s. 88.8:8: 3:3:3:33:8:33,333.32. 888 88.88:388:::::::::88 $28.38:3:33333.88:::::: xist: S & 3 8: 88.83 88: 82& :: 2888 :88: 833 8.

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