June 18, 2019 u vol. 116 u no. 25 From the Cover 12353 Regulating biomineralization in echinoderms 12156 Superconducting copper oxide 12244 Adapting to increasing social diversity 12261 Economic impacts of melting Greenland ice sheet 12468 Chlamydia trachomatis and ammonia production Contents THIS WEEK IN PNAS Cover image: Pictured is a live sea 12113 In This Issue urchin embryo at the prism stage stained with a membrane tracker (gray) and a calcium-binding dye (false color blue). NEWS FEATURE—An in-depth look at trending science issues Miri Morgulis et al. examined gene 12116 Probing the limits of “evolutionary rescue” regulation and mineral uptake and Amy McDermott deposition as skeletons formed in the embryos. The authors found that vascular endothelial growth factor QNAS (VEGF) signaling activated hundreds 12121 QnAs with Mitchell A. Lazar of genes, including genes for Sandeep Ravindran biomineralization and vascularization. The authors also found similarities See Inaugural Article on page 12147 between VEGF-induced mechanisms 12123 QnAs with Hidde L. Ploegh and those that influence vascularization Prashant Nair in vertebrates. Additional similarities See Inaugural Article on page 7624 in issue 16 of volume 116 suggested that vertebrate vascularization and sea urchin spiculogenesis evolved from an PROFILE ancestral VEGF-driven program adapted 12126 Profile of David D. Ginty for biomineralization in echinoderms. Sandeep Ravindran See the article by Morgulis et al. on See Inaugural Article on page 9168 in issue 19 of volume 116 pages 12353–12362. Image courtesy of Smadar Ben-Tabou de-Leon, Tsvia Gildor, and Miri Morgulis. COMMENTARIES 12129 A different branch of the high Tc family? D. J. Scalapino See companion article on page 12156 12131 Adaptation to diversity: Individual and societal processes Linda R. Tropp See companion article on page 12244 12134 Valuing the Greenland ice sheet and other complex geophysical phenomena William A. Pizer See companion article on page 12261 12136 How Chlamydia trachomatis conquered gut microbiome-derived antimicrobial compounds and found a new home in the eye Arkaprabha Banerjee and David E. Nelson See companion article on page 12468 Free online through the PNAS open access option. PNAS u June 18, 2019 u vol. 116 u no. 25 u iii–vii Downloaded by guest on September 29, 2021 ENGINEERING LETTERS 12183 Intraarticular injection of relaxin-2 alleviates 12139 Misallocation of mycorrhizal traits leads to shoulder arthrofibrosis misleading results William A. Blessing, Stephen M. Okajima, M. Belen Cubria, Leho Tedersoo, Saleh Rahimlou, and Mark Brundrett Juan C. Villa-Camacho, Miguel Perez-Viloria, Patrick M. 12141 Reply to Tedersoo et al.: Plant species within the Williamson, Angie N. Sabogal, Sebastian Suarez, Lay-Hong same family or genus can have different Ang, Suzanne White, Evelyn Flynn, Edward K. Rodriguez, mycorrhizal types? Mark W. Grinstaff, and Ara Nazarian Tao Sun, Hongguang Zhang, and Zhengwen Wang 12193 Hydrodynamics control shear-induced pattern 12143 Populations are not declining and food webs are not formation in attractive suspensions collapsing at the Luquillo Experimental Forest Zsigmond Varga, Vincent Grenard, Stefano Pecorario, Nicolas Taberlet, Vincent Dolique, Se´bastien Manneville, Thibaut M. R. Willig, L. Woolbright, S. J. Presley, T. D. Schowalter, Divoux, Gareth H. McKinley, and James W. Swan R. B. Waide, T. Heartsill Scalley, J. K. Zimmerman, G. Gonza´lez, and A. E. Lugo PHYSICS 12145 Reply to Willig et al.: Long-term population trends in the Luquillo Rainforest 12199 Magnetic field-induced intermediate quantum spin liquid with a spinon Fermi surface Brad Lister and Andres Garcia Niravkumar D. Patel and Nandini Trivedi 12204 Crossover from interaction to driven regimes in INAUGURAL ARTICLE quantum vortex reconnections 12147 SR9009 has REV-ERB–independent effects on cell Luca Galantucci, Andrew W. Baggaley, Nick G. Parker, and Carlo F. Barenghi proliferation and metabolism Pieterjan Dierickx, Matthew J. Emmett, Chunjie Jiang, Kahealani Uehara, Manlu Liu, Marine Adlanmerini, and Mitchell A. Lazar SUSTAINABILITY SCIENCE See QnAs on page 12121 12212 Renewable CO2 recycling and synthetic fuel production in a marine environment Bruce D. Patterson, Frode Mo, Andreas Borgschulte, Magne BRIEF REPORT Hillestad, Fortunat Joos, Trygve Kristiansen, Svein Sunde, and Jeroen A. van Bokhoven 12153 A bacterial isolate from the Black Sea oxidizes sulfide with manganese(IV) oxide Jan V. Henkel, Olaf Dellwig, Falk Pollehne, Daniel P. R. SOCIAL SCIENCES Herlemann, Thomas Leipe, and Heide N. Schulz-Vogt ANTHROPOLOGY 12220 Reconstructing sexual divisions of labor from PHYSICAL SCIENCES fingerprints on Ancestral Puebloan pottery APPLIED PHYSICAL SCIENCES John Kantner, David McKinney, Michele Pierson, and Shaza Wester 12156 Superconductivity in a unique type of copper oxide W. M. Li, J. F. Zhao, L. P. Cao, Z. Hu, Q. Z. Huang, X. C. 12226 Temple occupation and the tempo of collapse at Wang, Y. Liu, G. Q. Zhao, J. Zhang, Q. Q. Liu, R. Z. Yu, Angkor Wat, Cambodia Y. W. Long, H. Wu, H. J. Lin, C. T. Chen, Z. Li, Z. Z. Gong, Alison K. Carter, Miriam T. Stark, Seth Quintus, Yijie Zhuang, Z. Guguchia, J. S. Kim, G. R. Stewart, Y. J. Uemura, S. Uchida, Hong Wang, Piphal Heng, and Rachna Chhay and C. Q. Jin See Commentary on page 12129 ECONOMIC SCIENCES 12232 Mangroves shelter coastal economic activity BIOPHYSICS AND COMPUTATIONAL BIOLOGY from cyclones 12161 The base pair-scale diffusion of nucleosomes Jacob P. Hochard, Stuart Hamilton, and Edward B. Barbier modulates binding of transcription factors ENVIRONMENTAL SCIENCES Sergei Rudnizky, Hadeel Khamis, Omri Malik, Philippa Melamed, and Ariel Kaplan 12238 Evolution of global marine fishing fleets and the response of fished resources Yannick Rousseau, Reg A. Watson, Julia L. Blanchard, CHEMISTRY and Elizabeth A. Fulton 12167 Ratiometric two-photon microscopy reveals attomolar copper buffering in normal and Menkes mutant cells PSYCHOLOGICAL AND COGNITIVE SCIENCES M. Thomas Morgan, Daisy Bourassa, Shefali Harankhedkar, 12566 Elephants have a nose for quantity Adam M. McCallum, Stephanie A. Zlatic, Jenifer S. Calvo, Joshua M. Plotnik, Daniel L. Brubaker, Rachel Dale, Lydia N. Gabriele Meloni, Victor Faundez, and Christoph J. Fahrni Tiller, Hannah S. Mumby, and Nicola S. Clayton EARTH, ATMOSPHERIC, AND PLANETARY SCIENCES SOCIAL SCIENCES 2 1 12173 H/ H variation in microbial lipids is controlled by 12244 Humans adapt to social diversity over time NADPH metabolism Miguel R. Ramos, Matthew R. Bennett, Douglas S. Massey, Reto S. Wijker, Alex L. Sessions, Tobias Fuhrer, and Michelle Phan and Miles Hewstone 12261 Economics of the disintegration of the Greenland See Commentary on page 12131 ice sheet 12250 Segregation through the multiscalar lens William Nordhaus Madalina Olteanu, Julien Randon-Furling, See Commentary on page 12134 and William A. V. Clark iv u www.pnas.org Contents Downloaded by guest on September 29, 2021 12255 The promise and peril of sexual harassment programs 12327 Regulation of Caenorhabditis elegans neuronal Frank Dobbin and Alexandra Kalev polarity by heterochronic genes Maria Armakola and Gary Ruvkun SUSTAINABILITY SCIENCE ECOLOGY 12261 Economics of the disintegration of the Greenland – ice sheet 12337 A global model of island species area relationships William Nordhaus Thomas J. Matthews, Franc¸ois Rigal, Kostas A. Triantis, and Robert J. Whittaker See Commentary on page 12134 ENVIRONMENTAL SCIENCES BIOLOGICAL SCIENCES 12173 2H/1H variation in microbial lipids is controlled by NADPH metabolism ANTHROPOLOGY Reto S. Wijker, Alex L. Sessions, Tobias Fuhrer, and Michelle Phan 12220 Reconstructing sexual divisions of labor from fingerprints on Ancestral Puebloan pottery EVOLUTION John Kantner, David McKinney, Michele Pierson, 12343 On the occurrence of cytochrome P450 in viruses and Shaza Wester David C. Lamb, Alec H. Follmer, Jared V. Goldstone, David R. Nelson, Andrew G. Warrilow, Claire L. Price, APPLIED BIOLOGICAL SCIENCES Marie Y. True, Steven L. Kelly, Thomas L. Poulos, 12270 Fast-moving bat ears create informative Doppler shifts and John J. Stegeman Xiaoyan Yin and Rolf Mu¨ller 12353 Possible cooption of a VEGF-driven tubulogenesis program for biomineralization in echinoderms BIOCHEMISTRY Miri Morgulis, Tsvia Gildor, Modi Roopin, Noa Sher, 12161 The base pair-scale diffusion of nucleosomes Assaf Malik, Maya Lalzar, Monica Dines, Shlomo modulates binding of transcription factors Ben-Tabou de-Leon, Lama Khalaily, and Smadar Ben-Tabou de-Leon Sergei Rudnizky, Hadeel Khamis, Omri Malik, Philippa Melamed, and Ariel Kaplan 12363 Ancient Yersinia pestis genomes from across Western Europe reveal early diversification 12167 Ratiometric two-photon microscopy reveals attomolar during the First Pandemic (541–750) copper buffering in normal and Menkes mutant cells Marcel Keller, Maria A. Spyrou, Christiana L. Scheib, Gunnar M. Thomas Morgan, Daisy Bourassa, Shefali Harankhedkar, U. Neumann, Andreas Kro¨pelin, Brigitte Haas-Gebhard, Bernd Adam M. McCallum, Stephanie A. Zlatic, Jenifer S. Calvo, Pa¨ffgen, Jochen Haberstroh, Albert Ribera i Lacomba, Claude Gabriele Meloni, Victor Faundez, and Christoph J. Fahrni Raynaud, Craig Cessford, Raphae¨l Durand, Peter Stadler, 12275 Inward-facing conformation of a multidrug resistance Kathrin Na¨gele, Jessica S. Bates, Bernd Trautmann, Sarah A. MATE family transporter Inskip, Joris Peters, John E. Robb, Toomas Kivisild, Dominique Sandra Zakrzewska, Ahmad Reza Mehdipour, Viveka Castex, Michael McCormick,