Data Set 3. Liver-cell transcripts 1 Affymetrix systematic Genbank name name Description Dr.2947.1.A1_at AI496754 NA Dr.2945.1.A1_a_at BI707709 NA Dr.2944.1.A1_at BM531153 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) Dr.2941.1.S1_at BC049015.1 Brain protein 44. Dr.2956.1.S1_at BC049017.1 H3 histone, family 3A. Dr.2953.2.S1_at CD015569 Sorting nexin 3. Dr.2952.1.S1_at NM_178290.2 Selenoprotein T. Dr.2918.1.S1_at BC044153.1 scaffold attachment factor B Dr.2908.1.A1_at BQ109087 NA Dr.2902.1.S1_at BG306487 NA Dr.2899.1.A1_at AI415936 Similar to RIKEN cDNA 6230416A05 gene. Dr.2951.1.S1_at CD606490 ubiquinol-cytochrome c reductase core protein II Dr.2938.1.S1_at BC044202.1 glutamate dehydrogenase 1 Dr.2931.1.A1_at BI889618 KIAA0251 protein. Dr.2920.1.A1_at AW777460 NA Dr.2992.1.A1_at CD606359 OPA1 protein. Dr.2991.1.A1_at BI983581 NA Dr.2988.1.A1_at BI673378 PGC-1 related co-activator. Dr.2985.1.A1_at AI723156 NA Dr.3020.1.A1_at BM071818 SEC22 vesicle trafficking protein-like 1 (S. cerevisiae) Dr.3005.1.A1_at AW777332 asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta- glucosyltransferase) Dr.3004.1.A1_at AW019063 NA Dr.2966.1.A1_at BM534227 Histone acetyltransferase MYST1. Dr.2964.1.S1_at BC050165.1 Cop-coated vesicle membrane protein p24 precursor (p24A). Dr.2961.1.S1_at BI883957 Retinol dehydrogenase. Dr.2960.1.A1_at AA566325 pre-alpha (globulin) inhibitor, H3 polypeptide Dr.3000.1.A1_at AI544756 NA Dr.2979.1.S1_at BC051617.1 NADH:ubiquinone oxidoreductase MLRQ subunit homolog (NUOMS). 2 Dr.2974.1.A1_at AI588098 Hypothetical protein DKFZp686I06147 (Fragment). Dr.2827.1.S1_at BC053120.1 dynactin 2 (p50) Dr.2812.1.A1_at BQ285217 CGI-50 protein. Dr.2810.2.A1_at BG728800 NA Dr.2800.1.A1_at AW420443 NA Dr.284.3.S1_a_at BM956991 ribosomal protein L6 Dr.2839.1.S1_at BC044439.1 NA Dr.2832.1.A1_at BI878464 NA Dr.2784.1.A1_at AI942949 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 Dr.2779.1.A1_at BM005005 Nedd4 family interacting protein 2 Dr.2778.1.S1_at BC046039.1 syntaxin 4A (placental) Dr.2773.2.A1_at BI891718 NA Dr.2830.1.A1_at BG303780 Hypothetical protein KIAA1142 (Fragment). Dr.280.2.S1_at AL910408 ribosomal protein S20 Dr.280.1.S1_at AF329680.1 Junction plakoglobin. Dr.2790.1.A1_at BM777160 NA Dr.2895.1.S1_at BI888149 NA Dr.2884.1.S1_at AI545004 NA Dr.2876.1.A1_at AW019178 Eukaryotic initiation factor 4B. Dr.2869.1.S1_at BI880088 NA Dr.297.1.S1_at BC047859.1 signal sequence receptor, gamma (translocon-associated protein gamma) Dr.2898.1.A1_at BM024340 FBP-interacting repressor (Siah binding protein 1, FBP interacting repressor, pyrimidine tract binding splicing factor, Ro ribonucleoprotein-binding protein 1). Dr.2897.1.S1_at BC047863.1 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Dr.2851.1.A1_at BI891814 Centrosome-associated protein 350 (Hypothetical protein KIAA0480). Dr.2850.1.S1_at BC052136.1 methionine adenosyltransferase II, alpha Dr.2849.1.S1_at AF442500.1 baculoviral IAP repeat-containing 2 Dr.2845.1.A1_at AI965227 NA Dr.2896.1.S1_at BC045301.1 phosphoribosyl pyrophosphate synthetase 1 Dr.2866.1.S1_at BC053254.1 chromosome 6 open reading frame 55 Dr.2863.1.A1_at BM777179 LCLC549. Dr.3226.1.A1_at BI877588 NA 3 Dr.3225.1.A1_at AI878758 glutamate dehydrogenase 1 Dr.3216.1.A1_at AW019173 Hypothetical protein FLJ25678. Dr.321.1.S1_at NM_131309.1 RAN, member RAS oncogene family Dr.324.2.A1_a_at BM103861 adhesion regulating molecule 1 Dr.3237.1.A1_at AI793356 NA Dr.3234.1.A1_at AI723305 Hypothetical protein KIAA0645. Dr.3197.3.A1_x_at AW059155 protocadherin gamma subfamily C, 5 Dr.3197.1.A1_x_at BI671227 protocadherin gamma subfamily C, 5 Dr.3197.1.A1_a_at BI671227 protocadherin gamma subfamily C, 5 Dr.3185.1.A1_at BG306420 NA Dr.323.1.S1_at AI641606 heterogeneous nuclear ribonucleoprotein M Dr.3205.1.S1_at BM402134 cytochrome P450, family 2, subfamily J, polypeptide 2 Dr.3200.1.A1_at AI721919 NA Dr.3198.1.S1_at BI880581 Putative GTP-binding protein PTD004 (PRO2455). Dr.3293.2.A1_at AI878799 NA Dr.3283.1.S1_at BM070482 NA Dr.3280.1.S1_at BC053157.1 WD-repeat protein An11 homolog. Dr.3275.1.A1_at BG306810 glycerol-3-phosphate dehydrogenase 1 (soluble) Dr.3315.1.A1_at AI545303 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) Dr.3307.1.A1_at AW203146 Hypothetical protein FLJ90656. Dr.3305.1.S1_at BC045309.1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) Dr.3253.1.A1_at BI883218 NA Dr.3248.1.A1_at CD605267 NA Dr.3243.1.A1_at AW117123 Similar to RIKEN cDNA 2410013I23 gene. Dr.3241.1.A1_at BM071310 chromosome 6 open reading frame 111 Dr.330.1.A1_at AI974140 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 Dr.3270.1.S1_at BC048036.1 actin related protein 2/3 complex, subunit 1A, 41kDa Dr.327.1.A1_at AI878797 NA Dr.3073.1.A1_at AI585030 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 Dr.3054.1.A1_at BI867479 proteasome (prosome, macropain) 26S subunit, ATPase, 4 Dr.3048.1.A1_at AI883274 catenin, beta like 1 Dr.3039.1.A1_at AI477930 NA 4 Dr.3096.1.A1_at BM571916 translocase of inner mitochondrial membrane 17 homolog A (yeast) Dr.3093.1.A1_at AI588368 farnesyltransferase, CAAX box, beta Dr.3090.1.S1_at BC050179.1 NA Dr.3025.2.S1_at BG738204 NA Dr.3025.1.A1_at BM316867 alpha-2-macroglobulin Dr.3023.1.S1_at BM571122 Human full-length cDNA clone CS0DN001YA15 of adult brain of Homo sapiens (Human) (Fragment). Dr.2860.1.S1_at BQ260759 NA Dr.3085.1.A1_at BM101507 Protein disulfide-isomerase A5 precursor (EC 5.3.4.1) (Protein disulfide isomerase-related protein). Dr.3033.2.A1_x_at AA497182 NA Dr.3029.1.A1_at AW019592 UDP glycosyltransferase 1 family, polypeptide A1 Dr.3025.3.S1_at BM530427 alpha-2-macroglobulin Dr.316.1.A1_at AA495481 NA Dr.3143.1.S1_at AI477254 proteasome (prosome, macropain) 26S subunit, ATPase, 3 Dr.3139.1.S1_at BM402142 zinc finger protein 36, C3H type-like 1 Dr.3133.1.A1_at AW019003 NA Dr.3256.1.A1_s_at BG883245 NA Dr.3180.1.A1_at BG306348 basic helix-loop-helix domain containing, class B, 2 Dr.3174.2.A1_at BQ132700 NA Dr.3121.1.A1_at BE017585 NA Dr.3110.1.A1_at BI980047 NA Dr.311.1.S1_at AW777720 Full-length cDNA clone CS0DL002YE04 of B cells (Ramos cell line) of Homo sapiens (human) (Fragment). Dr.3103.1.S1_at BC045463.1 PSMD1 protein (Fragment). Dr.3174.1.A1_at AI722508 NA Dr.3131.1.S1_at BE201867 ribosomal protein S8 Dr.3126.1.S1_at AI626220 mitochondrial ribosomal protein S36 Dr.26301.1.A1_at CD606547 NA Dr.26286.1.A1_at CD606396 NA Dr.26267.1.A1_at CD606280 NA Dr.2625.1.A1_at BQ092506 NA Dr.26322.1.A1_at AI522470 proliferation-associated 2G4, 38kDa 5 Dr.26313.1.A1_at CD606673 NA Dr.26309.1.A1_at CD606605 NA Dr.26148.1.A1_at CD604979 NA Dr.26131.1.S1_at BG303151 KIAA0776 Dr.26126.1.S1_at BC053306.1 Hypothetical protein. Dr.26124.1.A1_at BI878531 NA Dr.26303.1.A1_at CD606560 NA Dr.2621.1.A1_at AI667078 Hypothetical protein FLJ13921. Dr.26192.1.A1_at CD605609 NA Dr.26188.1.A1_at CD605569 NA Dr.26363.1.A1_at AW128181 Programmed cell death 4 (neoplastic transformation inhibitor). Dr.26356.1.S1_at AW165267 Transmembrane protein Tmp21 precursor (21 kDa Transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I). Dr.26355.1.A1_at BM860032 chromosome 6 open reading frame 62 Dr.26353.1.A1_at BG891854 NA Dr.26370.1.S1_at BM861676 Cellular senescence inhibited gene protein. Dr.26369.1.A1_at BI981102 NA Dr.26367.1.A1_at BI840855 NA Dr.26335.1.A1_at AW116194 NA Dr.26329.1.A1_at BG728815 NA Dr.26327.1.A1_at BI883940 NA Dr.26324.1.A1_at CA452365 acetyl-Coenzyme A synthetase 2 (AMP forming)-like Dr.26364.1.A1_at AL917972 NA Dr.26351.1.A1_at AL723765 apoptosis inhibitor 5 Dr.2634.1.A1_at BE605993 NA Dr.25944.1.A1_at CD605564 NA Dr.25917.1.S1_at BI892106 sorting nexin 7 Dr.25913.1.A1_at BI475827 NA Dr.25901.1.A1_at CD605096 NA Dr.26000.1.A1_at CD605897 growth factor receptor-bound protein 10 Dr.25999.1.A1_at CD605896 NA Dr.2596.3.A1_at BI705782 betaine-homocysteine methyltransferase Dr.25880.1.A1_at CD604915 NA 6 Dr.25879.1.A1_at CD604902 NA Dr.25868.1.S1_at BG305824 malate dehydrogenase 2, NAD (mitochondrial) Dr.25864.1.S1_at BC053184.1 chromosome 20 open reading frame 111 Dr.2596.1.S1_a_at BM342901 NA Dr.259.1.S1_at NM_131390.1 glycogen synthase kinase 3 beta Dr.25893.1.A1_at CD605017 NA Dr.25891.1.A1_at CD605001 NA Dr.26096.1.S1_x_at CD581037 2-hydroxyphytanoyl-CoA lyase (EC 4.1.-.-) (2-HPCL) (HSPC279). Dr.26073.1.A1_at CD606460 Hypothetical protein FLJ37651. Dr.26072.1.A1_at CD606459 NA Dr.26051.1.A1_x_at CD606342 NA Dr.26336.1.A1_at AW116556 Hypothetical protein KIAA1604 (Fragment). Dr.26116.1.S1_at BC052971.1 heat shock 70kDa protein 8 Dr.26101.1.A1_at CD606656 NA Dr.26025.1.A1_s_at CD606078 NA Dr.26025.1.A1_at CD606078 NA Dr.26021.1.A1_at CD606052 cullin 4B Dr.2601.1.S1_at BI877937 Hypothetical protein FLJ13340. Dr.261.1.S1_at NM_131263.1 NA Dr.26037.1.A1_at CD606231 NA Dr.26034.1.A1_at CD606187 NA Dr.26544.1.A1_at BE693164 NA Dr.26534.1.A1_at AI721732 NA Dr.26526.1.S1_at AW567065 von Hippel-Lindau binding protein 1 Dr.26522.1.A1_at AI943181 NA Dr.2665.1.A1_at BM101686 NA Dr.2656.1.A1_at AI721427 pyruvate dehydrogenase (lipoamide) alpha 1 Dr.2655.2.A1_at BM316183 Tpr. Dr.26514.1.A1_at AW018983 NFS1 nitrogen fixation 1 (S.