(12) United States Patent (10) Patent No.: US 7,868,229 B2 Ratcliffe Et Al

(12) United States Patent (10) Patent No.: US 7,868,229 B2 Ratcliffe Et Al

US007868229B2 (12) United States Patent (10) Patent No.: US 7,868,229 B2 Ratcliffe et al. (45) Date of Patent: Jan. 11, 2011 (54) EARLY FLOWERING IN GENETICALLY (58) Field of Classification Search ....................... None MODIFIED PLANTS See application file for complete search history. (56) References Cited (75) Inventors: Oliver Ratcliffe, Oakland, CA (US); Roderick W. Kumimoto, San Bruno, U.S. PATENT DOCUMENTS CA (US); Peter P. Repetti, Emeryville, 6,235,975 B1 5, 2001 Harada et al. 6,320,102 B1 1 1/2001 Harada et al. CA (US); T. Lynne Reuber, San Mateo, 6,476.212 B1 1 1/2002 Lalgudi et al. CA (US); Robert Creelman, Castro 6,495,742 B1 12/2002 Shinozaki et al. Valley, CA (US); Frederick D. Hempel, 6,545.201 B1 4/2003 Harada et al. Albany, CA (US) 6,677,504 B2 1/2004 da Costa e Silva et al. 6,781,035 B1 8/2004 Harada et al. (73) Assignee: Mendel Biotechnology, Inc., Hayward, 6.825,397 B1 1 1/2004 Lowe et al. 2001/0051335 A1 12/2001 Lalgudi et al. CA (US) 2002fOO23281 A1 2/2002 Gorlach et al. 2002fOO40489 A1 4/2002 Gorlach et al. (*) Notice: Subject to any disclaimer, the term of this 2003/0093837 A1 5/2003 Keddie et al. patent is extended or adjusted under 35 2003/O126638 A1 7/2003 Allen et al. U.S.C. 154(b) by 933 days. 2003. O188330 A1 10/2003 Heard et al. 2004/OOO9476 A9 1/2004 Harper et al. 2004, OO16022 A1 1/2004 Lowe et al. (21) Appl. No.: 11/705,903 2004/OO 19927 A1 1/2004 Sherman et al. 2004/0031072 A1 2/2004 La Rosa et al. (22) Filed: Feb. 12, 2007 2004.0034.888 A1 2/2004 Liu et al. 2004/O123338 A1 6/2004 Fincher et al. (65) Prior Publication Data 2004/O123339 A1 6/2004 Conner et al. 2004/O123343 A1 6/2004 La Rosa et al. US 2007/O1991 O7 A1 Aug. 23, 2007 2004/0172684 A1 9, 2004 Kovalic et al. 2004/O181830 A1 9, 2004 Kovalic et al. Related U.S. Application Data 2004/0214272 A1 10/2004 La Rosa et al. (63) Continuation-in-part of application No. 1 1/435.388, (Continued) filed on May 15, 2006, now Pat. No. 7,663,025, which is a continuation-in-part of application No. PCT/ FOREIGN PATENT DOCUMENTS AR PO70 102784 1, 2008 US2004/37584, filed on Nov. 12, 2004, application CA 2302828 10, 2000 No. 1 1/705.903, which is a continuation-in-part of CL 185107 2, 2008 application No. 10/714,887, filed on Nov. 13, 2003, (Continued) application No. 1 1/705.903, which is a continuation in-part of application No. 10/546,266, filed as applica OTHER PUBLICATIONS tion No. PCT/US2004/005654 on Feb. 25, 2004, now U.S. Appl. No. 09/533,030, filed Mar. 22, 2000, Keddie, James et al., entire document. Pat. No. 7,659,446, application No. 1 1/705,903, which U.S. Appl. No. 10/286.264, filed Jun. 25, 2008, Keddie, James, et al., is a continuation-in-part of application No. 10/374, office action. 780, filed on Feb. 25, 2003, application No. 1 1/705, U.S. Appl. No. 10/286.264, filed Mar. 10, 2009, Keddie, James, et al., 903, which is a continuation-in-part of application No. office action. U.S. Appl. No. 10/286.264, filed Aug. 11, 2006, Keddie, James, et al., 10/412,699, filed on Apr. 10, 2003, application No. office action. 11/705.903, which is a continuation-in-part of appli U.S. Appl. No. 10/286.264, filed Oct. 7, 2005, Keddie, James, et al., cation No. 10/374,780, filed on Feb. 25, 2003, appli office action. cation No. 1 1/705.903, which is a continuation-in-part (Continued) of application No. 10/675,852, filed on Sep. 30, 2003, Primary Examiner Stuart F. Baum application No. 1 1/705.903, which is a continuation (74) Attorney, Agent, or Firm Jeffrey M. Libby:Yifan Mao in-part of application No. 10/666,642, filed on Sep. 18, 2003. (57) ABSTRACT The present invention provides polynucleotides encoding (60) Provisional application No. 60/411,837, filed on Sep. CCAAT-binding transcription factor polypeptides that modu 18, 2002, provisional application No. 60/434,166, late the onset of reproductive development in plants. Poly filed on Dec. 17, 2002. nucleotides encoding functional CCAAT-binding transcrip tion factors were incorporated into expression vectors, (51) Int. Cl. introduced into plants, and ectopically expressed. The CI2N 15/82 (2006.01) encoded polypeptides of the invention significantly shortened AOIH 5/00 (2006.01) the time to flower development in the transgenic plants, as AOIH 5/10 (2006.01) compared to the flowering time of control plants. (52) U.S. Cl. ....................... 800/298; 800/290,800/287: 800/320, 800/306; 800/278 19 Claims, 9 Drawing Sheets US 7,868,229 B2 Page 2 U.S. PATENT DOCUMENTS Asamizu, E., et al. (Apr. 28, 2000). Generation of 7137 non-redun dant expressed sequence tags from a legume, Lotus japonicus. DNA 2004/0216190 A1 10, 2004 Kovalic et al. Res. 7 (2), 127-130. 2004/0229367 A1 11/2004 Berka et al. Bucher, P., and Trifonov, E.N. (Jun. 1988). CCAAT box revisited: 2004/0259145 A1 12/2004 Wood et al. bidirectionality, location and context. J Biomol Struct Dyn 5, 1231 2005/0022266 A1 1/2005 Wu et al. 1236. 2005, OO86718 A1 4/2005 Heard et al. Bucher, P. (Apr. 20, 1990). Weight matrix descriptions of four 2005/0172364 A1 8, 2005 Heard et al. eukaryotic RNA polymerase II promoter elements derived from 502 2007. O184092 A1 8/2007 Meyer et al. unrelated promoter sequences. J Mol Biol 212, 563-578. 2008/0040973 A1 2/2008 Nelson et al. Chae, H.D., et al. (May 20, 2004). Cdk2-dependent phosphorylation 2008. O104730 A1 5, 2008 Wu et al. of the NF-Y transcription factor is essential for the expression of the 2008. O163397 A1 7/2008 Ratcliffe et al. cell cycle-regulatory genes and cell cycle G1/S and G2/M transitions. 2008/O172759 A1 7/2008 da Costa e Silva et al. Oncogene 23, 4084-4088. Clarke, B., et al. (Mar. 2003). Arabidopsis genomic information for FOREIGN PATENT DOCUMENTS interpreting wheat EST sequences. Funct. Integr. Genomics 3 (1-2), 33-38. DE 19503359 2, 1996 Gelinas, R., et al. (Jan. 1985). Sequences of G gamma, Agamma, and EP 1033 405 9, 2000 beta genes of the Greek (A gamma) HPFH mutant: evidence for a EP 1 42O 630 2, 2003 distal CCAAT box mutation in the Agamma gene. ProgClin Biol Res EP 1454993 9, 2004 191, 125-139. EP O8O3572 10/2007 Good, L.F., and Chen, K.Y. (May 1996). Cell cycle- and age-depen GB 2244272 11, 1991 dent transcriptional regulation of human thymidine kinase gene: the GB 2392444 3, 2004 role of NF-Y in the CBP/tk binding complex. Biol Signals 5, 163 WO WO 98.37184 8, 1998 169. WO WO 98/37755 9, 1998 WO WO 98.58069 12/1998 Hiei, Y., et al. Efficient transformation of rice (Oryza sativa L.) WO WO99,53016 A2 10, 1999 mediated by Agrobacterium and sequence analysis of the boundaries WO WO99,67405 12/1999 of the T-DNA. Plant J. Aug. 1994; 6(2): 271-282. WO WOOO,28058 5, 2000 Ito, T., et al. (Oct. 1995). A far-upstream sequence of the wheat WO WOOO, 53724 A2 9, 2000 histone H3 promoter functions differently in rice and tobacco cul WO WOO1/36598 A1 5, 2001 tured cells. Plant Cell Physiol 36, 1281-1289. WO WOO1/45493 A2 6, 2001 Johnson, P.F., and McKnight, S.L. (Jul. 1989). Eukaryotic transcrip WO WOO1,64022 9, 2001 tional regulatory proteins. Annu Rev Biochem 58, 799-839. WO WOO1,773.11 10, 2001 Jones, P.G., et al. (epubNov. 26, 2002). Gene discovery and microar WO WOO2,06499 1, 2002 ray analysis of cacao varieties. Planta 216 (2), 255-264. WO WO O2, 16655 2, 2002 Maity, S.N., and de Crombrugghe, B. (May 1998). Role of the WO WO O2/46442 6, 2002 CCAAT-binding protein CBF/NF-Y in transcription. Trends WO WO O2/O57439 A2 * T 2002 Biochem Sci 23, 174-178. WO WO O2/O792.45 A2 10, 2002 Mazon, M.J., Gancedo, J.M., and Gancedo, C. (Oct. 1982). WO WOO3,OOO898 1, 2003 Phosphorylation and inactivation of yeast fructose-bisphosphatase in WO WOO3,OO1902 1, 2003 vivo by glucose and by proton ionophores. A possible role for cAMP. Eur J. Biochem 127, 605-608. WO WOO3,OO2751 1, 2003 McNabb, D.S., Xing, Y., and Guarente, L. (Jan. 1995). Cloning of WO WOO3,OO8540 1, 2003 yeast HAP5: a novel subunit of a heterotrimeric complex required for WO WOO3,O14327 A2 2, 2003 CCAAT binding. Genes Dev 9, 47-58. WO WO 03/020936 3, 2003 Olesen, J.T., and Guarente, L. (Oct. 1990). The HAP2 subunit of WO WOO3,083.042 10, 2003 yeast CCAAT transcriptional activator contains adjacent domains for WO WO 2004/OO982O 1, 2004 subunit association and DNA recognition: model for the HAP2/3/4 WO WO 2004/031349 A2 4/2004 complex. Genes Dev 4, 1714-1729. WO WO 2004/076638 A2 9, 2004 Rieping, M., and Schoffl, F. (Jan. 1992). Synergistic effect of WO WO 2004/079006 9, 2004 upstream sequences, CCAAT box elements, and HSE sequences for WO WO 2005/001050 1, 2005 enhanced expression of chimaeric heat shock genes in transgenic WO WO2005/033319 A2 4/2005 tobacco.

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