Supplementary Table 2 - hnRNP K co-immunoprecipitated transcripts regulated by BDNF Gene Symbol Description Fold change Aldob Rattus norvegicus aldolase B, fructose-bisphosphate (Aldob), mRNA [NM_012496] 0.24 Olr583 Rattus norvegicus olfactory receptor 583 (Olr583), mRNA [NM_001000928] 0.25 0.00 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZUC5] [ENSRNOT00000046312] 0.26 Tex13b Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZTY2] [ENSRNOT00000020162] 0.27 0.00 AW527531 UI-R-BO1-ajv-d-02-0-UI.s1 UI-R-BO1 Rattus norvegicus cDNA clone UI-R-BO1-ajv-d-02-0-UI 3', mRNA sequence [AW527531] 0.28 Depdc7 Rattus norvegicus DEP domain containing 7 (Depdc7), mRNA [NM_001029916] 0.28 0.00 Unknown 0.29 0.00 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D4A139] [ENSRNOT00000048596] 0.30 Cd300e Rattus norvegicus CD300e molecule (Cd300e), mRNA [NM_001166577] 0.30 Fabp12 Rattus norvegicus fatty acid binding protein 12 (Fabp12), mRNA [NM_001134614] 0.30 0.00 Tax1-binding protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q66HA4] [ENSRNOT00000041988] 0.30 Thbs2 Rattus norvegicus thrombospondin 2 (Thbs2), mRNA [NM_001169138] 0.31 Lrrc55 Rattus norvegicus leucine rich repeat containing 55 (Lrrc55), mRNA [NM_001122975] 0.31 Sqrdl Rattus norvegicus sulfide quinone reductase-like (yeast) (Sqrdl), nuclear gene encoding mitochondrial protein, mRNA [NM_001047913] 0.32 0.00 Unknown 0.32 Cpa5 Rattus norvegicus carboxypeptidase A5 (Cpa5), mRNA [NM_001002808] 0.33 Kif1c Rattus norvegicus kinesin family member 1C (Kif1c), mRNA [NM_145877] 0.34 0.00 Unknown 0.34 LOC684158 PREDICTED: Rattus norvegicus similar to chromosome 1 open reading frame 36 (LOC684158), mRNA [XM_001069205] 0.34 Mpp7 MAGUK p55 subfamily member 7 [Source:UniProtKB/Swiss-Prot;Acc:Q5U2Y3] [ENSRNOT00000025458] 0.34 Zfp367 Rattus norvegicus zinc finger protein 367 (Zfp367), mRNA [NM_001012051] 0.35 0.00 Unknown 0.36 RGD1562521 PREDICTED: Rattus norvegicus similar to Ppnx (RGD1562521), mRNA [XM_001055260] 0.36 Skiv2l Rattus norvegicus superkiller viralicidic activity 2-like (S. cerevisiae ) (Skiv2l), mRNA [NM_213559] 0.36 0.00 Unknown 0.36 0.00 Q505Q0_MOUSE (Q505Q0) Wdr36 protein, partial (24%) [TC592821] 0.36 Il1rapl2 Rattus norvegicus interleukin 1 receptor accessory protein-like 2 (Il1rapl2), mRNA [NM_001166342] 0.36 Ltb Rattus norvegicus lymphotoxin beta (TNF superfamily, member 3) (Ltb), mRNA [NM_212507] 0.36 RGD1559677 Rattus norvegicus similar to cell surface receptor FDFACT (LOC363890), mRNA [XM_344088] 0.36 0.00 Unknown 0.36 RGD1565844 Rattus norvegicus similar to RIKEN cDNA 1700045I19 (RGD1565844), mRNA [NM_001108255] 0.36 0.00 PREDICTED: Rattus norvegicus dynein, axonemal, heavy polypeptide 9 (Dnah9), mRNA [XM_002727722] 0.36 0.00 Unknown 0.37 Ska1 Rattus norvegicus spindle and kinetochore associated complex subunit 1 (Ska1), mRNA [NM_001106134] 0.37 Efcab7 Rattus norvegicus EF-hand calcium binding domain 7 (Efcab7), mRNA [NM_001191866] 0.37 0.00 Unknown 0.37 Pygl Rattus norvegicus phosphorylase, glycogen, liver (Pygl), mRNA [NM_022268] 0.37 0.00 Unknown 0.37 LOC367515 Rattus norvegicus similar to RIKEN cDNA 1700081O22 (LOC367515), mRNA [NM_001014271] 0.37 Rufy1 Rattus norvegicus RUN and FYVE domain containing 1 (Rufy1), mRNA [NM_001100727] 0.37 Cdc14a Rattus norvegicus CDC14 cell division cycle 14 homolog A (S. cerevisiae) (Cdc14a), transcript variant 1, mRNA [NM_001134856] 0.37 0.00 Unknown 0.37 Il18 Rattus norvegicus interleukin 18 (Il18), mRNA [NM_019165] 0.38 Megf8 PREDICTED: Rattus norvegicus multiple EGF-like-domains 8 (Megf8), mRNA [XM_341803] 0.38 Pfkfb2 Rattus norvegicus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (Pfkfb2), transcript variant 3, mRNA [NM_080477] 0.38 Tmco5a Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZNV2] [ENSRNOT00000006809] 0.38 Nags Rattus norvegicus N-acetylglutamate synthase (Nags), mRNA [NM_001107053] 0.38 Slc7a15 Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 (Slc7a15), mRNA [NM_001106714] 0.38 0.00 Unknown 0.38 Olig3 Rattus norvegicus oligodendrocyte transcription factor 3 (Olig3), mRNA [NM_001106269] 0.38 LOC688286 PREDICTED: Rattus norvegicus similar to threonine aldolase 1 (LOC688286), mRNA [XM_001081745] 0.38 LOC683598 PREDICTED: Rattus norvegicus similar to Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP) (LOC683598), mRNA [XM_001066690] 0.38 Pqlc2 Rattus norvegicus PQ loop repeat containing 2 (Pqlc2), mRNA [NM_001108689] 0.39 Apol9a Rattus norvegicus apolipoprotein L 9a (Apol9a), mRNA [NM_001025066] 0.39 0.00 Unknown 0.39 Olr1461 Rattus norvegicus olfactory receptor 1461 (Olr1461), mRNA [NM_001000022] 0.39 Rnf135 Rattus norvegicus ring finger protein 135 (Rnf135), mRNA [NM_001012010] 0.39 0.00 Unknown 0.39 Pgr Rattus norvegicus progesterone receptor (Pgr), mRNA [NM_022847] 0.39 Fam20a Rattus norvegicus family with sequence similarity 20, member A (Fam20a), mRNA [NM_001012237] 0.39 Rassf9 Rattus norvegicus Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 (Rassf9), mRNA [NM_022959] 0.39 Acat3 Rattus norvegicus Ab2-076 mRNA, complete cds. [AY325187] 0.39 Olr621 Rattus norvegicus olfactory receptor 621 (Olr621), mRNA [NM_001000652] 0.40 Ndst4 Rattus norvegicus N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 (Ndst4), mRNA [NM_001191849] 0.40 0.00 Rattus norvegicus similar to karyopherin (importin) alpha 2 (LOC317233), mRNA [XM_228535] 0.40 Podnl1 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZY32] [ENSRNOT00000037453] 0.40 0.00 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D4A9H9] [ENSRNOT00000038733] 0.40 Sec16b Rattus norvegicus SEC16 homolog B (S. cerevisiae) (Sec16b), mRNA [NM_053571] 0.40 Akap3 Rattus norvegicus A kinase (PRKA) anchor protein 3 (Akap3), mRNA [NM_001005557] 0.40 LOC502876 PREDICTED: Rattus norvegicus similar to protein phosphatase 1, regulatory subunit 15B (LOC502876), miscRNA [XR_086238] 0.41 0.00 Unknown 0.41 RT1-CE10 Rattus norvegicus RT1 class I, locus CE10 (RT1-CE10), mRNA [NM_001008833] 0.41 LOC100361581 PREDICTED: Rattus norvegicus homeobox protein-like (LOC100361581), mRNA [XM_002728967] 0.41 Ccdc96 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3Z9F2] [ENSRNOT00000008601] 0.41 0.00 Unknown 0.41 RGD1565975 PREDICTED: Rattus norvegicus RGD1565975 (RGD1565975), mRNA [XM_238038] 0.41 Wbscr16 Rattus norvegicus Williams-Beuren syndrome chromosome region 16 homolog (human) (Wbscr16), mRNA [NM_001108332] 0.41 Opn3 Rattus norvegicus opsin 3 (Opn3), mRNA [NM_001191933] 0.42 Spef2 Rattus norvegicus sperm flagellar 2 (Spef2), mRNA [NM_022620] 0.42 0.00 Ac2-008 [Source:UniProtKB/TrEMBL;Acc:Q7TPK9] [ENSRNOT00000047163] 0.42 0.00 Unknown 0.42 0.00 Williams Beuren syndrome chromosome region 27 [Source:RefSeq peptide;Acc:NP_001102969] [ENSRNOT00000002002] 0.42 0.00 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZUA5] [ENSRNOT00000031690] 0.42 Cno Rattus norvegicus cappuccino homolog (mouse) (Cno), mRNA [NM_001100766] 0.42 Top2a Rattus norvegicus topoisomerase (DNA) II alpha (Top2a), mRNA [NM_022183] 0.42 Fancc Rattus norvegicus Fanconi anemia, complementation group C (Fancc), mRNA [NM_012557] 0.42 0.00 predicted gene 3086 Gene [Source:MGI Symbol;Acc:MGI:3781262] [ENSRNOT00000061518] 0.42 Tlr12 Rattus norvegicus toll-like receptor 12 (Tlr12), mRNA [NM_001108682] 0.42 Slco5a1 Rattus norvegicus solute carrier organic anion transporter family, member 5A1 (Slco5a1), mRNA [NM_001107898] 0.42 RGD1306862 Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZQ80] [ENSRNOT00000008107] 0.42 Plk4 Rattus norvegicus polo-like kinase 4 (Drosophila) (Plk4), mRNA [NM_001107669] 0.42 Elovl3 Rattus norvegicus elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 (Elovl3), mRNA [NM_001107602] 0.43 Hps6 Rattus norvegicus Hermansky-Pudlak syndrome 6 (Hps6), mRNA [NM_181432] 0.43 Fam53a Rattus norvegicus family with sequence similarity 53, member A (Fam53a), mRNA [NM_001107228] 0.43 0.00 Unknown 0.43 Grm8 Rattus norvegicus glutamate receptor, metabotropic 8 (Grm8), mRNA [NM_022202] 0.43 Snrpf Rattus norvegicus small nuclear ribonucleoprotein polypeptide F (Snrpf), mRNA [NM_001126091] 0.43 0.00 Rattus norvegicus similar to putative homeobox protein (LOC294473), mRNA [XM_228242] 0.43 0.00 Unknown 0.43 RGD1309995 PREDICTED: Rattus norvegicus similar to CG13957-PA (RGD1309995), mRNA [XM_001076152] 0.43 Pdcl2 PREDICTED: Rattus norvegicus phosducin-like 2 (Pdcl2), mRNA [XM_001076368] 0.43 Olr1532 Rattus norvegicus olfactory receptor 1532 (Olr1532), mRNA [NM_001001103] 0.43 LOC679119 RCG30752, isoform CRA_aUncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZWC5] [ENSRNOT00000050949] 0.43 Lgi2 Rattus norvegicus leucine-rich repeat LGI family, member 2 (Lgi2), mRNA [NM_001107219] 0.43 Uts2d Rattus norvegicus urotensin 2 domain containing (Uts2d), mRNA [NM_198133] 0.43 0.00 Rattus norvegicus similar to putative homeobox protein (LOC294473), mRNA [XM_228242] 0.43 Slc25a37 Rattus norvegicus solute carrier family 25, member 37 (Slc25a37), nuclear gene encoding mitochondrial protein, mRNA [NM_001013996] 0.44 Vom2r53 Rattus norvegicus vomeronasal 2 receptor, 53 (Vom2r53), mRNA [NM_173131] 0.44 Ccdc88c Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D3ZUU7] [ENSRNOT00000005908] 0.44 RGD1308818 Rattus norvegicus similar to hypothetical protein (RGD1308818), mRNA [NM_001127486] 0.44 Atl3 Rattus norvegicus atlastin GTPase 3 (Atl3), mRNA [NM_001044241] 0.44 RGD1306227 Rattus norvegicus similar to 4833420G17Rik protein (RGD1306227), mRNA [NM_001014037] 0.44 0.00 Unknown