Digital Repository Universitas Jember Molecular and Biological Characterization of Ralstonia Phage RsoM1USA, a New Species of P2virus, Isolated in the United States Hardian Susilo Addy1,2, Abdelmonim Ali Ahmad1,3 and Qi Huang1* 1. Floral and Nursery Plants Research Unit, United States National Arboretum, United States Department of Agriculture– Agricultural Research Service, Beltsville, MD, United States 2. Department of Plant Protection, Faculty of Agriculture, University of Jember, Jember, Indonesia 3. Department of Plant Pathology, Faculty of Agriculture, Minia University, El-minia, Egypt Digital Repository Universitas Jember Digital Repository Universitas Jember Digital Repository Universitas Jember Digital Repository Universitas Jember ł ō Digital Repository Universitas Jember Digital Repository Universitas Jember Digital Repository Universitas Jember Digital Repository Universitas Jember ō Digital Repository Universitas Jember Digital Repository Universitas Jember Tue, Mar 5, 2019 at 9:17 PM Tue, 05 March 2019 New articles in the field of Microbiology FRONTIERS IN MICROBIOLOGY Section "Evolutionary and Genomic Microbiology" A Mini-ISY100 Transposon Delivery System Effective in γ Proteobacteria Emanuele Conte, Linda Mende, Ian Grainge, and Sean D. Colloms Commentary: Genome-Based Taxonomic Classification of the Phylum Actinobacteria FRONTIERS IN MICROBIOLOGY (Continued) Radhey S. Gupta Section "Systems Microbiology" Crosstalk Regulation Between Bacterial A Developing Symbiosis: Enabling Cross-Talk Chromosome Replication and Chromosome Between Ecologists and Microbiome Scientists Partitioning Laura Tipton, John L. Darcy, and Nicole A. Hynson Gregory T. Marczynski, Kenny Petit, and Priya Patel Dynamic Change of Gut Microbiota During Porcine Evolutionary Patterns of Thylakoid Architecture in Epidemic Diarrhea Virus Infection in Suckling Piglets Cyanobacteria Anni Huang, Rujian Cai, Qun Wang, Lei Shi, Jan Mareš, Otakar Strunecký, Lenka Bučinská, and Chunling Li, He Yan, and He Yan Jana Wiedermannová Fungal Community Ecology Using MALDI-TOF MS Genomes of Neutrophilic Sulfur-Oxidizing Demands Curated Mass Spectral Databases Chemolithoautotrophs Representing 9 Matheus Sanitá Lima, Rosymar Coutinho de Lucas, Proteobacterial Species From 8 Genera Nelson Lima, Maria de Lourdes Teixeira de Moraes Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Polizeli, and Cledir Santos Umezawa, Chiaki Hori, Taichi E. Takasuka, Yukako Global Microbiome Diversity Scaling in Hot Springs Kato, and Manabu Fukui With DAR (Diversity-Area Relationship) Profiles Genomic Analyses of >3,100 Nasopharyngeal Lianwei Li, and Zhanshan Ma Pneumococci Revealed Significant Differences Identification and Analysis of Human Microbe- Between Pneumococci Recovered in Four Different Disease Associations by Matrix Decomposition and Geographical Regions Label Propagation Andries J. van Tonder, James E. Bray, Keith A. Jia Qu, Yan Zhao, and Jun Yin Jolley, Melissa Jansen van Rensburg, Sigríður J. Metagenomic Approach to Characterizing Disease Quirk, Gunnsteinn Haraldsson, Martin C. J. Maiden, Epidemiology in a Disease-Endemic Environment in Stephen D. Bentley, Ásgeir Haraldsson, Helga Northern Thailand Erlendsdóttir, Karl G. Kristinsson, and Angela B. Ratree Takhampunya, Achareeya Korkusol, Brueggemann Chalermpol Pongpichit, Komsan Yodin, Artharee Genomic Characteristics of Desulfonema ishimotonii Rungrojn, Nitima Chanarat, Sommai Promsathaporn, Tokyo 01T Implying Horizontal Gene Transfer Among Taweesak Monkanna, Sasikanya Thaloengsok, Phylogenetically Dispersed Filamentous Gliding Bousaraporn Tippayachai, Naruemon Kumfao, Allen Bacteria L. Richards, and Silas A. Davidson Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Nutritional Interventions Improved Rumen Functions and Manabu Fukui and Promoted Compensatory Growth of Growth- Improving Cadmium Resistance in Escherichia coli Retarded Yaks as Revealed by Integrated Through Continuous Genome Evolution Transcripts and Microbiome Analyses Weitong Qin, Jintong Zhao, Xiaoxia Yu, Xiaoqing Liu, Rui Hu, Huawei Zou, Zhisheng Wang, Binghai Cao, Xiaoyu Chu, Jian Tian, and Ningfeng Wu Quanhui Peng, Xiaoping Jing, Yixin Wang, Yaqun Insights Into the Evolution of Staphylococcus aureus Shao, Zhaoxi Pei, Xiangfei Zhang, Bai Xue, Lizhi Daptomycin Resistance From an in vitro Bioreactor Wang, Suonan Zhao, Yuqing Zhou, and Xiangying Model Digital Repository Universitas Jember Erica Lasek-Nesselquist, Jackson Lu, Ryan Kong Schneider, Zhuo Ma, Vincenzo Russo, Smruti Saponin-Induced Shifts in the Rumen Microbiome Mishra, Manjunath P. Pai, Janice D. Pata, Kathleen and Metabolome of Young Cattle A. McDonough, and Meenakshi Malik Bing Wang, Man Peng Ma, Qi Yu Diao, and Yan Tu Whole Proteome Clustering of 2,307 Proteobacterial Shaping the Infant Microbiome With Non-digestible Genomes Reveals Conserved Proteins and Carbohydrates Significant Annotation Issues Stella Verkhnyatskaya, Michela Ferrari, Paul de Vos, Svetlana Lockwood, Kelly A. Brayton, Jeff A. Daily, and Marthe T. C. Walvoort and Shira L. Broschat Web-gLV: A Web Based Platform for Lotka-Volterra FRONTIERS IN MICROBIOLOGY Based Modeling and Simulation of Microbial Section "Microbial Physiology and Metabolism" Populations Anaerobic Degradation of Sulfated Polysaccharides Bhusan K. Kuntal, Chetan Gadgil, and Sharmila S. by Two Novel Kiritimatiellales Strains Isolated From Mande Black Sea Sediment FRONTIERS IN MICROBIOLOGY Daan M. van Vliet, Susakul Palakawong Na Section "Food Microbiology" Ayudthaya, Sally Diop, Laura Villanueva, Alfons J. M. (Ultra) High Pressure Homogenization Potential on Stams, and Irene Sánchez-Andrea the Shelf-Life and Functionality of Kiwifruit Juice Cell Wall Hydrolases in Bacteria: Insight on the Francesca Patrignani, Cinzia Mannozzi, Silvia Tappi, Diversity of Cell Wall Amidases, Glycosidases and Urszula Tylewicz, Federica Pasini, Vincenzo Peptidases Toward Peptidoglycan Castellone, Ylenia Riciputi, Pietro Rocculi, Santina Aurore Vermassen, Sabine Leroy, Régine Talon, Romani, Maria Fiorenza Caboni, Fausto Gardini, Christian Provot, Magdalena Popowska, and Mickaël Rosalba Lanciotti, and Marco Dalla Rosa Desvaux Fungal Species Diversity in French Bread Engineering a Microbial Consortium Based Whole- Sourdoughs Made of Organic Wheat Flour Cell System for Efficient Production of Glutarate Charlotte Urien, Judith Legrand, Pierre Montalent, From L-Lysine Serge Casaregola, and Delphine Sicard Xin Wang, Rui Su, Kequan Chen, Sheng Xu, Jiao Identification of Bacterial Composition in Freeze- Feng, and Pingkai Ouyang Dried Agaricus bisporus During Storage and the Escherichia coli Uses Separate Enzymes to Produce Resultant Odor Deterioration H2S and Reactive Sulfane Sulfur From L-cysteine Wenjian Yang, Liuqing Wang, Qiuhui Hu, Fei Pei, Kai Li, Yufeng Xin, Guanhua Xuan, Rui Zhao, and Mariga Alfred Mugambi Huaiwei Liu, Yongzhen Xia, and Luying Xun Lactobacillus casei Strain Shirota Alleviates Exploring Structural Diversity of Microbe Secondary Constipation in Adults by Increasing the Pipecolinic Metabolites Using OSMAC Strategy: A Literature Acid Level in the Gut Review Yangwenshan Ou, Shanbin Chen, Fazheng Ren, Rui Pan, Xuelian Bai, Jianwei Chen, Huawei Zhang, Ming Zhang, Shaoyang Ge, Huiyuan Guo, Hao and Hong Wang Zhang, and Liang Zhao Historical Factors Associated With Past Lactobacillus plantarum ZS2058 and Lactobacillus Environments Influence the Biogeography of rhamnosus GG Use Different Mechanisms to Prevent Thermophilic Endospores in Arctic Marine Sediments Salmonella Infection in vivo China A. Hanson, Albert L. Müller, Alexander Loy, Junsheng Liu, Zhennan Gu, Fanfen Song, Hao Clelia Dona, Ramona Appel, Bo Barker Jørgensen, Zhang, Jianxin Zhao, and Wei Chen and Casey R. J. Hubert Prevalence and Characterization of Food-Related Micro- and Nanotopography Sensitive Bacterial Methicillin-Resistant Staphylococcus aureus (MRSA) Attachment Mechanisms: A Review in China Yifan Cheng, Guoping Feng, and Carmen I. Moraru Shi Wu, Jiahui Huang, Feng Zhang, Qingping Wu, Plant-Growth Promotion and Biocontrol Properties of Jumei Zhang, Rui Pang, Haiyan Zeng, Xiaojuan Three Streptomyces spp. Isolates to Control Yang, Moutong Chen, Juan Wang, Jingsha Dai, Bacterial Rice Pathogens Liang Xue, Tao Lei, and Xianhu Wei Zulma Rocío Suárez-Moreno, Diana Marcela Prevalence, Antibiotic Susceptibility, and Molecular Vinchira-Villarraga, Diana Isabel Vergara-Morales, Characterization of Cronobacter spp. Isolated From Leonardo Castellanos, Freddy A. Ramos, Corrado Edible Mushrooms in China Guarnaccia, Giuliano Degrassi, Vittorio Venturi, and Chengsi Li, Haiyan Zeng, Jumei Zhang, Wenjing He, Nubia Moreno-Sarmiento Na Ling, Moutong Chen, Shi Wu, Tao Lei, Haoming Porphyrin Excretion Resulting From Mutation of a Wu, Yingwang Ye, Yu Ding, Juan Wang, Xianhu Wei, Gene Encoding a Class I Fructose 1,6-Bisphosphate Youxiong Zhang, and Qingping Wu Aldolase in Rhodobacter capsulatus Probiotic Properties of Enterococcus Isolated From Hao Ding, Rafael G. Saer, and J. Thomas Beatty Artisanal Dairy Products Single-Cell Approach to Monitor the Unfolded Protein Yousef Nami, Reza Vaseghi Bakhshayesh, Hossein Response During Biotechnological Processes With Mohammadzadeh Jalaly, Hajie Lotfi, Solat Eslami, Pichia pastoris and Mohammad Amin Hejazi Hana Raschmanová, Iwo Zamora, Martina Proteomic Analysis of Lactobacillus nagelii in the Borčinová, Patrick Meier, Astrid Weninger, Dominik Presence of Saccharomyces cerevisiae Isolated Mächler, Anton Glieder, Karel Melzoch, Zdeněk From Water Kefir and Comparison With Lactobacillus