Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title FY2012 LBNL LDRD Annual Report (PUB) Permalink https://escholarship.org/uc/item/76h0t50r Author Ho, Darren Publication Date 2013-06-21 eScholarship.org Powered by the California Digital Library University of California LBNL-103E Laboratory Directed Research and Development Program FY 2012 June 2013 DISCLAIMER This document was prepared as an account of work sponsored by the United States Government. While this document is believed to contain correct information, neither the United States Government nor any agency thereof, nor The Regents of the University of California, nor any of their employees, makes any warranty, express or implied, or assumes any legal responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. 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Report on Ernest Orlando Lawrence Berkeley National Laboratory Laboratory Directed Research and Development Program FY 2012 Ernest Orlando Lawrence Berkeley National Laboratory Berkeley, CA 94720 APRIL, 2013 Prepared for the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 Table of Contents Introduction..................................................................................................................................................... ix Accelerator and Fusion Research Division.................................................................................................... 1 Paul Emma Free Electron Laser Soft X-ray Self-Seeding ................................................................ 1 ....... Joel Fajans, Antihydrogen Research to Advance Studies in Matter- Jonathan Wurtele Antimatter Asymmetry ................................................................................................ 2 ......... David Robin Novel Accelerator and Engineering Strategies for Ion Beam 3 Cancer Therapy...................................................................................................................... Peter Seidl Ion Beam Driven Fusion and Fusion-Fission Hybrids ................................ 4 ......................... Jeroen van Tilborg Experimental Realization of a High-Harmonics-Seeded, Laser- Plasma-Accelerator Driven Free-Electron Laser................................ ................................5 ...\ Advanced Light Source Division .................................................................................................................... 6 Jinghua Guo Soft X-Ray Spectroscopy for In-situ Electronic Structure Study of Artificial Photosynthesis ................................................................ ................................6 .. Alexander Hexemer, Long-range Ordering of Block Copolymers on Patterned Howard Padmore, Silicon................................................................................................ ................................7 .... Ting Xu, Thomas Russell Alastair MacDowell, New Opportunities in Hard X-Ray Tomography – High et al. Temperature and Elemental Imaging ................................................................ 8 .................... Stefano Marchesini Nanoscale Surveyor................................................................................................ 9 ............... Sunjoy Roy, Lensless X-ray Imaging of Orbital Order Bragg Plane ................................ 10 ........................ Weilun Chao, Stefano Cabrini, Stefano Marchesini Tolek Tyliszczak, Ambient Pressure Photoemission Spectromicroscopy ................................ 11 ......................... Hendrik Bluhm, Zahid Hussain Cheng Wang, et al. Soft X-Ray Spectroscopy of Lithium and Conductive Polymers for Li-Ion Batteries ................................................................................................ 12 ................ Tony Warwick Test Monochromator/Spectrometer Systems with Prototype High Density Gratings for High Resolution X-ray Scattering ................................ 13 .............. Wanli Yang, et al. Soft X-Ray Spectroscopy of Lithium-ions and Electron for Li- Ion Batteries................................................................................................ 14 ........................... Chemical Sciences Division ........................................................................................................................... 15 Rebecca Abergel Global Transcriptome, Deletome and Proteome Profiling of Yeast Exposed to Radioactive Metal Ions: a Tool to Distinguish Radiation-Induced Damage From Chemical-Toxicity ................................ 15 .......................... Ali Belkacem, et al. Scientific Tools in Multi-Dimensional X-ray Spectroscopy and Coherent Diffractive Imaging................................................................ 16................................ iii Mary Gilles Photo-switchable Metal Organic Frameworks for CO2 Sequestration ................................................................................................ 17 ........................ John Hartwig Elementary Organometallic Reactions in a Protein Matrix................................ 18 ................... David Shuh, Developing f-electron Soft X-ray Spectroscopy Simulation, David Pendergast, Theory, and Experiment for Clean Energy Materials ................................ 19 .......................... Andrew Canning F. Dean Toste, A Multi-Investigator Approach Towards Chemoenzymatic Kenneth Raymond, Catalysis ................................................................................................ 20............................... Robert Bergman Kevin Wilson, Oxidative Transformations of Organic Aerosol ................................ ................................21 ... Allen Goldstein Computing Sciences (National Energy Research Scientific Computing Center, and Computational Research Divisions).. 22 Deborah Agarwal Enabling HPC Workflows on Clouds................................................................ 22 .................... Maciej Haranczyk An Optimization-based Strategy for Computational Design of Nanoporous Carbon-Zero Materials ................................................................ 23 ..................... Xiaoye S. Li Next Generation Computing for X-ray Science ................................ ................................24 ... Peter Nugent Nyx: The Lyman Alpha Forest Cosmology Simulator................................ 25 .......................... Jamie Sethian, et al. Interlinkage of Cross-Disciplinary Mathematical Technologies................................ 26 ........... John Shalf, LPAR: Low-Power Architecture Research for Exascale David Donofrio Computing ................................................................................................ 27 ............................ Daniela Ushizima Quantitative Image Analysis for Computational Modeling ................................ 28 .................. Chao Yang, Computational Techniques for Non-crystalline X-ray Stafano Marchesini Diffraction Imaging ................................................................................................ 29 .............. Chao Yang Computational Algorithms and Mathematical Software Tools for Material Science and Chemistry ................................................................ 30 ..................... Shane Canon, Defining an Ecosystem to Support Data-Intensive Science ................................ 31 ................. Lavanya Ramakrishnan Earth Sciences Division ................................................................................................................................. 32 Nathan Bouskill Developing a Mechanistic High-Latitude Soil Carbon and Nitrogen cycle Model in TOUGHREACT................................................................ 32 ............ Romy Chakraborty High-throughput Isolation and Functional Screening (HIFS) of Microbes Relevant to Today's Carbon Cycling and Bioenergy Needs................................................................................................ ................................33 ..... Michael Commer, Enhanced Subsurface Fluid Characterization Using Joint Stefan Finsterle, Hydrological and Geophysical Imaging................................................................ 34 ................ Michael Kowalsky, Gregory Newman James A. Davis Effect of Mineral Coatings on Biogeochemical Processes................................ 35 .................... Christer Jansson CyanoAlkenes: Engineering Cyanobacteria for Phototrophic Production of Advanced Biofuels ................................................................ 36 ......................... Curtis Oldenburg CO2 as Cushion Gas for Compressed Air Energy Storage in Subsurface Reservoirs ................................................................................................ 37 ........... iv David Romps Interactions