(12) United States Patent (10) Patent No.: US 8,883,832 B2 Shallwitz Et Al

(12) United States Patent (10) Patent No.: US 8,883,832 B2 Shallwitz Et Al

USOO8883832B2 (12) United States Patent (10) Patent No.: US 8,883,832 B2 Shallwitz et al. (45) Date of Patent: *Nov. 11, 2014 (54) COMPOUNDS, COMPOSITIONS, AND (2013.01); C07D 277/60 (2013.01); A61 K METHODS FOR PREVENTING METASTASS 31/538 (2013.01); A61K 31/428 (2013.01); OF CANCER CELLS A61K 45/06 (2013.01); A61 K3I/7068 (2013.01) (71) Applicant: Aerpio Therapeutics Inc., Cincinnati, USPC ....................... 514/365: 514/254.02: 514/342 OH (US) (58) Field of Classification Search (72) Inventors: Robert Shalwitz, Bexley, OH (US); None Kevin Gene Peters, Cincinnati, OH See application file for complete search history. (US) (56) References Cited (73) Assignee: Aerpio Therapeutics Inc., Cincinnati, OH (US) U.S. PATENT DOCUMENTS (*) Notice: Subject to any disclaimer, the term of this 4,673,641 A 6/1987 George et al. 5,424,398 A 6/1995 Middeldorp et al. patent is extended or adjusted under 35 5,585,089 A 12/1996 Queen et al. U.S.C. 154(b) by 0 days. 5,688,781 A 1 1/1997 Siegallet al. 5,807,819 A 9/1998 Cheng et al. This patent is Subject to a terminal dis 5,994,128 A 11/1999 Fallaux et al. claimer. 6,033,908 A 3/2000 Bout et al. 6,342,219 B1 1/2002 Thorpe et al. (21) Appl. No.: 13/783,311 6,589,758 B1 7, 2003 Zhu 6,596,772 B1 7/2003 Huang et al. (22) Filed: Mar. 3, 2013 7,226,755 B1 6/2007 Peters et al. 7,507,568 B2 3/2009 Evdokimov 7,588,924 B2 9, 2009 Evdokimov et al. (65) Prior Publication Data 7,589,212 B2 9/2009 Gray et al. US 2014/0249100A1 Sep. 4, 2014 7,622,593 B2 11/2009 Gray et al. 7,795,444 B2 9/2010 Gray et al. 8, 106,078 B2 1/2012 Gray et al. Related U.S. Application Data 8,188,125 B2 5/2012 Gray et al. 8,258,311 B2 9/2012 Gray et al. (63) Continuation of application No. 12/677.550, filed as 8.329,916 B2 12/2012 Amarasinghe et al. application No. PCT/US2010/020822 on Jan. 12, 8.338,615 B2 12/2012 Gray et al. 2010, now Pat. No. 8,569,348. 2004O1671.83 A1 8/2004 Klopfenstein et al. 2004/0204863 A1 10/2004 Kim et al. (60) Provisional application No. 61/223.260, filed on Jul. 6, 2007/02991 16 A1 12/2007 Gray 2009. 2008.0004267 A1 1/2008 Gray 2008/0076764 A1 3/2008 Peters et al. 2008. O1086.31 A1 5/2008 Gray et al. (51) Int. Cl. 2009/0227639 A1 9/2009 Gray et al. AOIN 43/78 (2006.01) A6 IK3I/425 (2006.01) (Continued) A6 IK3I/427 (2006.01) A6 IK3I/53 (2006.01) FOREIGN PATENT DOCUMENTS CO7D 417/04 (2006.01) WO WOOOf 65085 11, 2000 C07D 277/64 (2006.01) WO WOOOf 65088 A1 11, 2000 CO7D 417/4 (2006.01) WO WOO2,26774 A1 4/2002 C07D 277/28 (2006.01) C07D 417/12 (2006.01) OTHER PUBLICATIONS A 6LX3L/2197 (2006.01) A6 IK3I/4245 (2006.01) Altschulet al., “Gapped BLAST and PSI-BLAST: A New Generation A6 IK3I/433 (2006.01) of Protein Database Search Programs.” Nucleic Acids Res., A6 IK3I/4439 (2006.01) 25(27).3389-3402 (1997). A6 IK3I/426 (2006.01) (Continued) C07D 277/60 (2006.01) A6 IK3I/538 (2006.01) A6 IK3I/428 (2006.01) Primary Examiner — Patrick Lewis A6 IK 45/06 (2006.01) (74) Attorney, Agent, or Firm — Richard S. Echler A6 IK3I/7068 (2006.01) (52) U.S. Cl. CPC ............ C07D 277/28 (2013.01); A61K3I/427 (57) ABSTRACT (2013.01); A61 K3I/513 (2013.01); C07D Disclosed are methods for preventing metastasis of cancer 417/04 (2013.01); C07D 277/64 (2013.01); cells. The disclosed compounds can be used to prevent the C07D 417/14 (2013.01); C07D 417/12 spread of tumor or other types of cancer cells. (2013.01); A61 K3I/497 (2013.01); A61 K 3 1/4245 (2013.01); A61 K31/433 (2013.01): A61 K3I/4439 (2013.01); A61 K3I/426 52 Claims, 5 Drawing Sheets US 8,883,832 B2 Page 2 (56) References Cited Itoh et al., “Purification and Characterization of the Catalytic Domains of the Human Receptor-Linked Protein Tyrosine U.S. PATENT DOCUMENTS Phosphatases HPTPB, Leukocyte Common Antigen (LCA), and Leukocyte Common Antigen-Related Molecule (LAR),” Journal of 2010, OO16336 A1 1/2010 Gray et al. 2011/0268694 A1 11/2011 Shallwitz et al. Biological Chemistry, 267(17): 12356-12363 (1992). 2012/O128625 A1 5, 2012 Shallwitz et al. Jones et al., “Development and Validation of a Genetic Algorithm for 2012/0129847 A1 5, 2012 Peters et al. Flexible Docking.” J. Mol. Biol., 267:727-748 (1997). Jones et al., “Molecular Recognition of Receptor Sites Using a OTHER PUBLICATIONS Genetic Algorithm with a Description of Desolvation.” J. Mol. Biol. 245:43-53 (1995). Annex et al., “Growth Factor-Induced Therapeutic Angiogenesis in Keen, “Radioligand Binding Methods for Membrane Preparations the Heart: Protein Therapy,” Cardiovascular Research, 65(3):649 and Intact cells.” Methods in Molecular Biology, 83: Receptor Signal 655 (2005). Transduction Protocols, edited Humana Press Inc., Totoway N.J. Ardeltet al., “Estradiol Regulates Angiopoietin-1 mRNA Expression (1997). Through Estrogen Receptor-O in a Rodent Experimental Stroke Köhler et al., “Continuous Cultures of Fused Cells Secreting Anti Model.” Stroke, 36:337-341 (2005). body of Predefined Specificity.” Biotechnology, 24:524-526 (1992). Auerbach et al., “Angiogenesis Assays: A Critical Overview.” Clini Krueger et al., “Structural Diversity and evolution of Human Recep cal Chemistry, 49:32-40 (2003). tor-Like Protein Tyrosine Phosphatases.” The EMBO Journal, Barany et al., “Solid-phase Peptide Synthesis: A Silver Anniversary 9(10):3241-3252 (1990). Report.” Int. J. Peptide Protein Res., 30 (6):705-739 (1987). Kugathasan et al., “Role of Angiopoietin-1 in Experimental and Bartlett et al., “Molecular Recognition in Chemical and Biological Human Pulmonary Arterial Hpertension.” Chest, 128:633-642 Problems; Cavet: A Program to Facilitate the Structure-Derived (2005). Design of Biologically Active Molecules.” Special Pub., Royal Kuntz et al., “A Geometric Approach to Macromolecule—Ligand Chem. Soc., 78:182-196 (1989). Interactions.” J. Mol. Biol. 161:269-288 (1982). Bohm, “The Computer Program LUDI: A New Method for the De Linet al., “Inhibition of Tumor Angiogenesis Using a Soluble Recep Novo Design of Enzyme Inhibitors.” J. Comuter-Aided. Molec. tor Establishes a Role for Tie2 in Pathologic Vascular Growth.” J. Clinical Invest...100(8): 2072-2078 (1997). Design, 6(1):61-78 (1992). Ma et al., “RNase Protection Assay.” Methods, 10(3):273-8 (1996). Bussolino, et al., “Molecular mechanisms of blood vessel formation.” Martin, "3D Database Searching in Drug Design.” J. of Medicinal Trends Biochem Sci. 22(7):251-256 (1997). Chemistry, 35(12):2145-2154 (1992). Carano et al., “Angiogenesis and Bone Repair. Drug Discovery Meadows, “Keeping Up with Drug Safety Information.” 2006: FDA Today, 8(21):980-989 (2003). Consumer Magazine: http://www.fda.gov/fdac/features/2006/306 Carvalho et al., “The Role of Angiogenesis in a Murine Tibial Model drugsafety.html, accessed Mar. 17, 2008. of Distraction Osteogenesis.” Bone, 34:849-861 (2004). Merrifield, “Solid Phase Peptide Synthesism. I. The Synthesis of a Chanteau et al., “Synthesis of Anthropomorphic Molecules: The Tetrapeptide.” J. Am. Chem. Soc., 85:2149-2154(1963). NanoPutians.” J. Org. Chem. 68:8750-8766 (2003). Miranker et al., “Functionality Maps of Binding Sites: A Multiple Cohen et al., “Molecular Modeling Software and Methods for Copy Simultaneous Search Method.” Proteins: Struc. Func. and Medicinal Chemistry.” J. Med. Chem., 33(3):883-894 (1990). Genectics, 11(1):29-34 (1991). Daar, “Perspective: Emerging Resistance Profiles of Newly Navaza, “AMoRe: An Automated Package for Molecular Replace Approved Antiretroviral Drugs.” Topics in HIV Medicine, 16(4): 110 ment.” J. Acta Cryst. A50: 157-163 (1994). 116 (2008). Nguyen et al., “Cellular Interactions in Vascular Growth and Differ Dean, “Recent Advances in Drug Design Methods: Where Will They entiation.” Int. Rev. Cytol., 204:1-48 (2001). Lead?” BioEssays, 16(9):683-687 (1994). Nishibata et al., “Automatic Creation of Drug Candidate Structures Fachinger et al., “Functional Interaction of Vascular Endothelial Based on Receptor Structure. Starting Point for Artificial Lead Gen Protein-Tyrosine Phosphatase with the Angiopoietin Receptor Tie eration.” Tetrahedron, 47(43):8985-8990 (1991). 2.” Oncogene, 18:5948-5953 (1999). O'Reilly, "Angiostatin: a novel angiogenesis inhibitor that mediates Flower, “Modelling G-Protein-Coupled Receptors for Drug Design.” the Suppression of metastases by a Lewis lung carcinoma. Cell, Biochimica et Biophysica Acta, 1422:207-234 (1999). 79(2):315-28 (1994). Folkman, J., “Tumor angiogenesis.” The Molecular Basis of Cancer O'Reilly, "Endostatin: an endogenous inhibitor of angiogenesis and (eds. Mendelsohn, J. Howley, P. M., Israel, M. A. & Liotta, L. A.) tumor growth.” Cell, 88(2):277-85 (1997). 206-232 (1995). Rarey et al., “A Fast Flexible Docking Method Using an Incremental Gaits et al., “Increase in Receptor-like Protein Tyrosine Phosphatase Construction Algorithm.” J. Mol. Biol., 261:470-489 (1996). Activity and Express Level on Density-Dependent Growth Arrest of Riechmann et al., “Reshaping Human Antibodies for Therapy.” Endothelial Cells.” Biochem J., 311.97-103 (1995). Nature, 332:323-327 (1988). Goodford, "A Computational Procedure for Determining Energeti Saliba, "Heparin in the Treatment of Burns: A Review.” May 2001; cally Favorable Binding Sites on Biologically Important Macromol Burn 27(4):349-358; full text edition, pp. 1-16. ecules,” J. Med. Chem. 28(7):849-57 (1985).

View Full Text

Details

  • File Type
    pdf
  • Upload Time
    -
  • Content Languages
    English
  • Upload User
    Anonymous/Not logged-in
  • File Pages
    95 Page
  • File Size
    -

Download

Channel Download Status
Express Download Enable

Copyright

We respect the copyrights and intellectual property rights of all users. All uploaded documents are either original works of the uploader or authorized works of the rightful owners.

  • Not to be reproduced or distributed without explicit permission.
  • Not used for commercial purposes outside of approved use cases.
  • Not used to infringe on the rights of the original creators.
  • If you believe any content infringes your copyright, please contact us immediately.

Support

For help with questions, suggestions, or problems, please contact us