College of Biological Sciences 2017 Publications by Authors in CBS Abd El-Rahim WM, Moawad H, Abdel Azeiz AZ, Sadowsky MJ. Optimization of conditions for decolorization of azo- based textile dyes by multiple fungal species. Journal of Biotechnology. 2017 Oct 20;260:11-17. Available from, DOI: 10.1016/j.jbiotec.2017.08.022 Abdelrahman H, ElHady M, Alcivar-Warren A, Allen S, Al-Tobasei R, Bao L et al. Erratum to: Aquaculture genomics, genetics and breeding in the United States: Current status, challenges, and priorities for future research. [BMC Genomics. 18, (2017), (191)] DOI: 10.1186/s12864-017-3557-1. BMC Genomics. 2017 Mar 16;18(1). 235. Available from, DOI: 10.1186/s12864-017-3614-9 Abdelrahman H, ElHady M, Alcivar-Warren A, Allen S, Al-Tobasei R, Bao L et al. Aquaculture genomics, genetics and breeding in the United States: Current status, challenges, and priorities for future research. BMC Genomics. 2017 Feb 20;18(1). 191. Available from, DOI: 10.1186/s12864-017-3557-1 Abou-Shanab RAI, Wongphatcharachai M, Sheaffer CC, Orf JC, Sadowsky MJ. Competition between introduced Bradyrhizobium japonicum strains and indigenous bradyrhizobia in Minnesota organic farming systems. Symbiosis. 2017 Nov 1;73(3):155-163. Available from, DOI: 10.1007/s13199-017-0505-4 Abudayyeh OO, Gootenberg JS, Essletzbichler P, Han S, Joung J, Belanto JJ et al. RNA targeting with CRISPR-Cas13. Nature. 2017 Oct 12;550(7675):280-284. Available from, DOI: 10.1038/nature24049 Ackerman D, Griffin D, Hobbie SE, Finlay JC. Arctic shrub growth trajectories differ across soil moisture levels. Global Change Biology. 2017 Oct 1;23(10):4294-4302. Available from, DOI: 10.1111/gcb.13677 Adamala KP, Martin-Alarcon DA, Guthrie-Honea KR, Boyden ES. Engineering genetic circuit interactions within and between synthetic minimal cells. Nature chemistry. 2017 May 1;9(5):431-439. Available from, DOI: 10.1038/nchem.2644 Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA. GppFst: Genomic posterior predictive simulations of FST and dxy for identifying outlier loci from population genomic data. Bioinformatics. 2017 May 1;33(9):1414-1415. Available from, DOI: 10.1093/bioinformatics/btw795 Ahmed W, Staley C, Sidhu J, Sadowsky M, Toze S. Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia. Applied Microbiology and Biotechnology. 2017 Feb 1;101(3):1253- 1266. Available from, DOI: 10.1007/s00253-016-7959-9 Ahmed W, Staley C, Hamilton KA, Beale DJ, Sadowsky MJ, Toze S et al. Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks. Science of the Total Environment. 2017 Jan 15;576:326-334. Available from, DOI: 10.1016/j.scitotenv.2016.10.090 Alejo JL, Blanchard SC. Miscoding-induced stalling of substrate translocation on the bacterial ribosome. Proceedings of the National Academy of Sciences of the United States of America. 2017 Oct 10;114(41):E8603-E8610. Available from, DOI: 10.1073/pnas.1707539114/-/DCSupplemental Allen K, Dupuy JM, Gei MG, Hulshof C, Medvigy D, Pizano C et al. Will seasonally dry tropical forests be sensitive or resistant to future changes in rainfall regimes? Environmental Research Letters. 2017 Feb 3;12(2). 023001. Available from, DOI: 10.1088/1748-9326/aa5968 Anderson SN, Johnson CS, Chesnut J, Jones DS, Khanday I, Woodhouse M et al. The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes. Developmental Cell. 2017 Nov 6;43(3):349- 358.e4. Available from, DOI: 10.1016/j.devcel.2017.10.005 CBS 2017 Publications Page 1 of 41 Andrew AL, Perry BW, Card DC, Schield DR, Ruggiero RP, McGaugh SE et al. Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python. BMC Genomics. 2017 May 2;18(1). 338. Available from, DOI: 10.1186/s12864-017-3743-1 Argyris PP, Koutlas IG. Orthokeratinized Odontogenic Cyst with an Associated Keratocystic Odontogenic Tumor Component and Ghost Cell Keratinization and Calcifications in a Patient with Gardner Syndrome. Head and Neck Pathology. 2017 Jun 1;11(2):240-248. Available from, DOI: 10.1007/s12105-016-0748-z Argyris PP, Gopalakrishnan R, Hu Y, Reichenberger EJ, Koutlas IG. Clinicopathologic and Molecular Characteristics of Familial Cherubism with Associated Odontogenic Tumorous Proliferations. Head and Neck Pathology. 2018 Mar 1;12(1):136-144. Available from, DOI: 10.1007/s12105-017-0837-7 Aronovich EL, Hyland KA, Hall BC, Bell JB, Olson ER, Rusten MU et al. Prolonged Expression of Secreted Enzymes in Dogs after Liver-Directed Delivery of Sleeping Beauty Transposons: Implications for Non-Viral Gene Therapy of Systemic Disease. Human gene therapy. 2017 Jul 1;28(7):551-564. Available from, DOI: 10.1089/hum.2017.004 Arroyo M, Kuriyama R, Trimborn M, Keifenheim D, Cañuelo A, Sánchez A et al. MCPH1, mutated in primary microcephaly, is required for efficient chromosome alignment during mitosis. Scientific Reports. 2017 Dec 1;7(1). 13019. Available from, DOI: 10.1038/s41598-017-12793-7 Arvola RM, Weidmann CA, Tanaka Hall TM, Goldstrohm AC. Combinatorial control of messenger RNAs by Pumilio, Nanos and Brain Tumor Proteins. RNA biology. 2017 Nov 2;14(11):1445-1456. Available from, DOI: 10.1080/15476286.2017.1306168 Asmus A, Koltz A, McLaren J, Shaver GR, Gough L. Long-term nutrient addition alters arthropod community composition but does not increase total biomass or abundance. Oikos. 2018 Mar 1;127(3):460-471. Available from, DOI: 10.1111/oik.04398 Assadian F, Kamel W, Laurell G, Svensson C, Punga T, Akusjärvi G. Expression profile of Epstein-Barr virus and human adenovirus small RNAs in tonsillar B and T lymphocytes. PLoS ONE. 2017 May 1;12(5). e0177275. Available from, DOI: 10.1371/journal.pone.0177275 Aukema KG, Escalante DE, Maltby MM, Bera AK, Aksan A, Wackett LP. In Silico Identification of Bioremediation Potential: Carbamazepine and Other Recalcitrant Personal Care Products. Environmental Science and Technology. 2017 Jan 17;51(2):880-888. Available from, DOI: 10.1021/acs.est.6b04345 Avery AW, Fealey ME, Wang F, Orlova A, Thompson AR, Thomas DD et al. Structural basis for high-affinity actin binding revealed by a β-III-spectrin SCA5 missense mutation. Nature communications. 2017 Dec 1;8(1). 1350. Available from, DOI: 10.1038/s41467-017-01367-w Avery AW, Thomas DD, Hays TS. β-III-spectrin spinocerebellar ataxia type 5 mutation reveals a dominant cytoskeletal mechanism that underlies dendritic arborization. Proceedings of the National Academy of Sciences of the United States of America. 2017 Oct 31;114(44):E9376-E9385. Available from, DOI: 10.1073/pnas.1707108114 Bajaj R, Chen S, Hu W, Huang Y, Prasad R, Kumar V et al. Protocol for biocontrol of soybean cyst nematode with root endophytic fungi. In Modern Tools and Techniques to Understand Microbes. Springer International Publishing. 2017. p. 401-412. Available from, DOI: 10.1007/978-3-319-49197-4_25 Baldridge G, Higgins LA, Witthuhn B, Markowski T, Baldridge A, Armien A et al. Proteomic analysis of a mosquito host cell response to persistent Wolbachia infection. Research in Microbiology. 2017 Sep 1;168(7):609-625. Available from, DOI: 10.1016/j.resmic.2017.04.005 Baldwin BG, Thornhill AH, Freyman WA, Ackerly DD, Kling MM, Morueta-Holme N et al. Species richness and endemism in the native flora of California. American journal of botany. 2017 Jan 1;104(3):487-501. Available from, DOI: 10.3732/ajb.1600326 CBS 2017 Publications Page 2 of 41 Balenger SL, Lara LM, Zuk M. Relative Amplitude of Courtship Song Chirp and Trill Components Does Not Alter Female Teleogryllus oceanicus Mating Behavior. Ethology. 2017 Feb 1;123(2):168-173. Available from, DOI: 10.1111/eth.12583 Ballen CJ, Blum JE, Brownell S, Hebert S, Hewlett J, Klein JR et al. A call to develop course-based undergraduate research experiences (CUREs) for Nonmajors courses. CBE Life Sciences Education. 2017 Jun 1;16(2). Available from, DOI: 10.1187/cbe.16-12-0352 Ballen CJ, Salehi S, Cotner S. Exams disadvantage women in introductory biology. PLoS ONE. 2017 Oct 1;12(10). e0186419. Available from, DOI: 10.1371/journal.pone.0186419 Ballen CJ, Wieman C, Salehi S, Searle JB, Zamudio KR. Enhancing diversity in undergraduate science: self-efficacy drives performance gains with active learning. CBE Life Sciences Education. 2017 Dec 1;16(4). ar56. Available from, DOI: 10.1187/cbe.16-12-0344 Ballen CJ, Greene HW. Walking and talking the tree of life: Why and how to teach about biodiversity. PLoS biology. 2017 Mar 20;15(3). e2001630. Available from, DOI: 10.1371/journal.pbio.2001630 Ballen CJ, Mason NA. Longitudinal analysis of a diversity support program in biology: A national call for further assessment. BioScience. 2017 Jan 1;67(4):367-373. Available from, DOI: 10.1093/biosci/biw187 Ballhorn DJ, Elias JD, Balkan MA, Fordyce RF, Kennedy PG. Colonization by nitrogen-fixing Frankia bacteria causes short-term increases in herbivore susceptibility in red alder (Alnus rubra) seedlings. Oecologia. 2017 Jun 1;184(2):497- 506. Available from, DOI: 10.1007/s00442-017-3888-2 Barker FK. Molecular Phylogenetics of the Wrens and Allies (Passeriformes: Certhioidea), with Comments on the Relationships of Ferminia. American Museum Novitates. 2017 Dec 8;2017-December(3887):1-27. Available from, DOI: 10.1206/3887.1 Barreto Pereira E, Pinto Ledezma JN, Gomes de Freitas C, Villalobos F, Garcia Collevatti R, Medeiros Maciel N. Evolution of anuran foam nest: trait conservatism and lineage diversification. Biological Journal of the Linnean Society. 2017 Oct 25. Available from, DOI: https://doi.org/10.1093/biolinnean/blx110 Barreto Pereira E, Pinto Ledezma JN, Gomes de Freitas C, Villalobos F, Garcia Collevatti R, Medeiros Maciel N.