RESOMAR Workshop on molecular tools for addressing marine microbial diversity (UMR 8187 LOG CNRS - ULCO - UdL / IFREMER) Agenda Wednesday January 16th 12:30 - Arrival of participants – LOG MREN Conference room – 32, avenue Foch – Wimereux Lunch (for registered participants) 14:00 - Welcome to the LOG laboratory and presentation of the Workshop - Felipe Artigas First session: on the use of molecular approaches for studying aquatic microbial diversity in research/observation programmes and networks 14:10 – 14:40 Review of approaches and questions for applying molecular tools for the assessment of aquatic microbial diversity – Sébastien Monchy / Solène Irion 14:40 – 15:00 Disentangling microbial diversity and ecology in small freshwater ecosystems - Gwendoline David, Purificación Lopez-Garcia, Philippe Deschamps, Marianne Simon, David Moreira, Gwendal Restoux, Benjamin Alric, Paola Bertolino, Ludwig Jardillier 15:00 – 15:20 Foraminifers (Rhizaria): environmental detection (eDNA) and microbiome - Magali Schweizer 15:20 – 15:40 The first International Census of Marine Microbes (ICoMM) 2005-2010: networking, analytical and visualisation platforms – Luis Felipe Artigas 15:40 – 16:00 Applying the TARA Oceans protocol to marine observation - marine genomics – Fabrice Not 16:00 – 16:30 Coffee break 16:30 – 16:50 – Applying the TARA Oceans protocol to marine observation - plankton imaging – Fabien Lombard 16:50 – 17:10 PHYTOBS: micro-phytoplankton observation network (SNO, IR-ILICO) - Maud Lemoine 17:10 - 17:30 Discussions 17:30 End of the session 19:30 - Dinner at the Wimereux Marine Station (SMW) (for registered participants) Thursday January 17th Second Session: current observation of microbial diversity in marine time series LOG MREN Conference room – 32, avenue Foch – Wimereux 09:15 – 09:35 Quantitative observations of plankton at Villefranche sur Mer and future directions using genomic methods – Fabien Lombard 09:35 – 09:55 Marine microbial diversity monitoring series at Sète – Francesca Vidussi 09:55 – 10:15 The Banyuls sur Mer time series – Pierre Galand (presentation given by Felipe Artigas) 10:15 – 10:35 La Rochelle Time Series and exploring the three domains of life in a tropical aquatic system Hélène Agogué 10:35 – 11:05 Coffee break - MREN Conference room 11:05 – 11h25 Marine Microbial Observatory in the bay of Brest and the Iroise Sea - Clarisse Lemonnier, Morgan Perennou, Christine Paillard, Loïs Maignien 11:25 – 11:45 The SOMLIT-Astan time series (Roscoff, English Channel) and microbial biodiversity monitoring with molecular tools – Mariarita Caracciolo, Fabienne Rigaut- Jalabert, Nathalie Simon 11:45 – 12:05 Observation at Luc Sur Mer SOMLIT Time Series – Juliette Fauchot 12:15 – 13:45 Lunch at the Wimereux Marine Station (SMW) – 28 av. Foch – Wimereux (for registered participants) 14:00 – 14:20 Boulogne-Wimereux Time Series of eukaryotic microbial diversity – Urania Christaki, Sébastien Monchy 14:20 – 14:40 Towards an IFREMER marine eDNA microbial observatory – Raffaele Siano Third Session: Round table on common operational procedures for technical/analytical work within a national network (for registered participants) 14:40 – 16:00 - First part 16:00 - 16:30 Coffee break - MREN Conference room 16:30 – 18:00 - Second part - End of the session 19:30 Dinner at the Wimereux Marine Station (SMW) – 28 av. Foch – Wimereux (for registered participants) January the 18th 9:15 – 10:45 Demonstration/Discussion Parallel Sessions (for registered participants) 1) Bioinformatics - Computers room (2nd floor, Wimereux Marine Station) Sara Rachik, Sébastien Monchy 2) Lab demonstration, from sample collection to sequencing - Biology (1st floor) and Molecular Biology (ground floor) laboratories (MREN) – Solène Irion, Ingrid Sassenhagen 3) Discussions towards implementation of an observation network of microbial diversity - MREN Conference Room 10:45 – 11:15 Coffee break MREN Conference Room 11:15 – 12:45 Plenary discussion and summary on steps to take towards the implementation observation network of microbial diversity - MREN Conference Room 13:00 - End of the Workshop Lunch (for registered participants) Local Organizing Committee MCU ULCO - LOG CNRS UMR ARTIGAS FELIPE [email protected] 8187 - Wimereux MCU ULCO - CNRS UMR 8187 BIARD TRISTAN [email protected] LOG - Wimereux Doctorante ULCO - CNRS UMR IRION SOLENE [email protected] 8187 LOG - MREN Wimereux ULCO - CNRS UMR 8187 LOG - MARQUANT MICHELLE [email protected] MREN Wimereux PR ULCO - ULCO - CNRS UMR MONCHY SEBASTIEN [email protected] 8187 LOG - MREN Wimereux CNRS UMR 8187 LOG - SMW PLOUVIN VALERIE [email protected] Wimereux Post-Doc ULCO - CNRS UMR SASSENHAGEN INGRID [email protected] 8187 LOG - Wimereux - By plane: § via airport Lille Lesquin, shuttle station for Lille Europe train station, then take the TER / TGV to Calais Fréthun, then switch to the TER to Wimille-Wimereux station (or continue to Boulogne sur Mer station and then take the “F” bus to Wimereux) § via airports in London, Paris and Brussels, then take a shuttle or train to catch the Eurostar or the TGV train to Calais Fréthun (then change to Wimille-Wimereux or change/continue to Boulogne sur Mer station) - By train: http://www.voyages-sncf.com/ - Take a train to Lille and/or directly to Calais-Fréthun or Boulogne Ville stations: Eurostar, TGV or TER from Paris Nord, Lille Europe, elsewhere in France - Then, take the regional train TER to Wimille-Wimereux (from Calais Fréthun or from Boulogne Ville) - 5 minutes walk (500 m) from Wimille-Wimereux railway station Take towards the sea, turn left when you arrive on the Rue Carnot. The LOG is at the southern entrance of the town) X Bus stop for Line F “Saint Jean” - By bus : http://log.univ-littoral.fr/ - line F from Station Liane, Boulogne-sur-mer, Quai 1 (see map below), going to "Wimereux Baston" – step out at "Saint Jean" stop (see map above) .