Table 5. Probesets (54) representing the top 50 transcripts identified by PAM that delineate lung adenocarcinomas with NED from non-NED lung adenocarcinomas Probeset ID GenBank/TIGR ID Gene Name Gene Symbol LocusLink ID PAM NED score PAM non-NED score 36299_at X02330 calcitonin/calcitonin-related polypeptide, alpha CALCA 796 3.810 -0.405 40544_g_at L08424 achaete-scute complex-like 1 (Drosophila) ASCL1 429 3.543 -0.376 40649_at X64810 proprotein convertase subtilisin/kexin type 1 PCSK1 5122 3.076 -0.327 36300_at X15943 calcitonin/calcitonin-related polypeptide, alpha CALCA 796 2.628 -0.279 40543_at L08424 achaete-scute complex-like 1 (Drosophila) ASCL1 429 2.470 -0.262 31477_at L08044 trefoil factor 3 (intestinal) TFF3 7033 2.175 -0.231 37898_r_at AI985964 trefoil factor 3 (intestinal) TFF3 7033 2.146 -0.228 40035_at AB012917 kallikrein 11 KLK11 11012 1.878 -0.199 40201_at M76180 dopa decarboxylase (aromatic L-amino acid decarboxylase) DDC 1644 1.864 -0.198 37897_s_at AI985964 trefoil factor 3 (intestinal) TFF3 7033 1.748 -0.186 36606_at X51405 carboxypeptidase E CPE 1363 1.543 -0.164 1745_at HG4679-HT5104 Oncogene Ret/Ptc, Fusion Activated --- --- 1.525 -0.162 37019_at J00129 fibrinogen, B beta polypeptide FGB 2244 1.459 -0.155 33426_at Y00064 chromogranin B (secretogranin 1) CHGB 1114 1.383 -0.147 35966_at X71125 glutaminyl-peptide cyclotransferase (glutaminyl cyclase) QPCT 25797 1.341 -0.142 35415_at X12901 villin 1 VIL1 7429 1.335 -0.142 35343_at M37400 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) GOT1 2805 1.324 -0.141 1788_s_at U48807 dual specificity phosphatase 4 DUSP4 1846 1.307 -0.139 39135_at AB018310 KIAA0767 protein KIAA0767 23151 1.298 -0.138 36406_at AA401397 kallikrein 13 KLK13 26085 1.295 -0.138 41416_at D14446 fibrinogen-like 1 FGL1 2267 1.275 -0.135 1582_at M29540 carcinoembryonic antigen-related cell adhesion molecule 5 CEACAM5 1048 1.250 -0.133 31331_at L10123 surfactant protein A binding protein SPAR 9981 1.215 -0.129 36482_s_at Y15724 ATPase, Ca++ transporting, ubiquitous ATP2A3 489 1.180 -0.125 31798_at AA314825 trefoil factor 1 (breast cancer, estrogen-inducible sequence expressed in) TFF1 7031 1.178 -0.125 36768_at D82347 neurogenic differentiation 1 NEUROD1 4760 1.144 -0.122 442_at X15187 tumor rejection antigen (gp96) 1 TRA1 7184 1.059 -0.112 39332_at AF035316 tubulin, beta polypeptide paralog MGC8685 347733 1.046 -0.111 32149_at AA532495 microseminoprotein, beta- MSMB 4477 1.028 -0.109 41470_at AF027208 prominin 1 PROM1 8842 1.022 -0.109 37426_at U80736 trinucleotide repeat containing 9 TNRC9 27324 1.011 -0.107 35147_at AB002360 MCF.2 cell line derived transforming sequence-like MCF2L 23263 1.011 -0.107 1261_i_at M16594 glutathione S-transferase A2 GSTA2 2939 1.006 -0.107 36060_at U51920 signal recognition particle 54kDa SRP54 6729 0.993 -0.105 39610_at X16665 homeo box B2 HOXB2 3212 0.986 -0.105 36636_at M12267 ornithine aminotransferase (gyrate atrophy) OAT 4942 0.983 -0.104 34265_at Y00757 secretory granule, neuroendocrine protein 1 (7B2 protein) SGNE1 6447 0.980 -0.104 35925_at AF040639 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) AKR7A3 22977 0.964 -0.102 33998_at U91618 neurotensin NTS 4922 0.954 -0.101 41312_r_at AI189624 nuclear receptor subfamily 2, group F, member 6 NR2F6 2063 0.951 -0.101 40627_at AI192108 Ras homolog enriched in brain RHEB 6009 0.945 -0.100 37617_at U90912 KIAA1128 protein KIAA1128 54462 0.936 -0.099 36203_at X16277 ornithine decarboxylase 1 ODC1 4953 0.930 -0.099 33399_at AA142942 chromosome 14 open reading frame 147 C14orf147 171546 0.925 -0.098 39201_r_at W28760 cytokine induced protein 29 kDa CIP29 84324 0.924 -0.098 34293_at AF004426 kinesin family member C3 KIFC3 3801 0.910 -0.097 33714_at Y10043 high-mobility group box 3 HMGB3 3149 0.909 -0.097 38045_at U96136 catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) CTNND2 1501 0.906 -0.096 33162_at X02160 insulin receptor INSR 3643 0.890 -0.095 33543_s_at U77718 pinin, desmosome associated protein PNN 5411 0.887 -0.094 36622_at AI989422 fibrinogen, gamma polypeptide FGG 2266 0.884 -0.094 1081_at M33764 ornithine decarboxylase 1 ODC1 4953 0.884 -0.094 37576_at U52969 Purkinje cell protein 4 PCP4 5121 0.881 -0.094 1481_at L23808 matrix metalloproteinase 12 (macrophage elastase) MMP12 4321 0.877 -0.093.