Madison, WI (US); Paul Otto, Madison, G:25: R 1339: St

Madison, WI (US); Paul Otto, Madison, G:25: R 1339: St

USOO842O367B2 (12) United States Patent (10) Patent No.: US 8.420,367 B2 Darzins et al. (45) Date of Patent: Apr. 16, 2013 (54) POLYNUCLEOTIDES ENCODING MUTANT 5,700,935 A 12/1997 Takenishi et al. HYDROLASE PROTEINS WITHENHANCED 3. A 6. 3. E. KINETICS AND FUNCTIONAL EXPRESSION 5,932,421war. A 8/1999 Ginsberga ca. et al. 5,945,526 A 8, 1999 Lee et al. (75) Inventors: Aldis Darzins, Highlands Ranch, CO 6.255.461 B1 7/2001 Mosbach et al. (US); Lance P. Encell, Fitchburg, WI 6,333,154 B1 12/2001 Ladant et al. (US); Rachel Friedman Ohana, 6,416,733 B1 7/2002 Barrett et al. Madison, WI (US); Paul Otto, Madison, g:25: R 1339: St. et al. WI (US); Gediminas Vidugiris, 6,800.453 B2 102004 Labaer et al. Fitchburg, WI (US); Keith V. Wood, Mt. 7,078,504 B2 7/2006 Short et al. Horeb, WI (US); Monika G. Wood, Mt. 7,238,842 B2 7/2007 Wood et al. Horeb, WI (US); Kris Zimmerman, 7,425,436 B2 9, 2008 Darzins et al. Madison, WI (US); Michael R. Slater, E. R. E. E." Madison, WI (US); Kate Qin Zhao, 2002.01371.71 A1 9, 2002 Short et al. Verona, WI (US) 2003/O166957 A1 9, 2003 Benneteau et al. 2004/O152880 A1 8, 2004 Minden (73) Assignee: Promega Corporation, Madison, WI 2005/0048580 A1 3/2005 Labaer et al. (US) 2005/OO95651 A1 5/2005 Camarero et al. 2006, OO24808 A1 2/2006 Darzins et al. 2007/0O874OO A1 4/2007 Darzins et al. (*) Notice: Subject to any disclaimer, the term of this 2007/0224620 A1 9, 2007 AE A. patent is extended or adjusted under 35 2008, 00264.07 A1 1/2008 Wood et al. U.S.C. 154(b) by 858 days. 2008/0274488 A1 11/2008 Darzins et al. 2009/0098.627 A1 4/2009 Darzins et al. (21) Appl. No.: 11/978,950 FOREIGN PATENT DOCUMENTS 1-1. BE 616245 10, 1962 (22) Filed: Oct. 30, 2007 CZ. 259396 10, 1988 EP O718300 6, 1996 (65) Prior Publication Data WO WO 98.3608O 8, 1998 WO WOO1,53303 7/2001 US 2008/O145882 A1 Jun. 19, 2008 WO WOO1? 60415 8, 2001 WO WOO1,77668 10, 2001 Related U.S. Application Data WO WOO2,28841 4/2002 WO WO O2/O57411 T 2002 (60) Provisional application No. 60/855.237, filed on Oct. WO WO O2/O68583 9, 2002 30, 2006, provisional application No. 60/930,201, (Continued) filed on May 15, 2007. OTHER PUBLICATIONS (51) Int. Cl. Witkowski et al., Biochemistry 38: 11643-11650, 1999).* CI2N IS/00 (2006.01) Seffernicket al., J. Bacteriol. 183(8):2405-2410, 2001.* CI2N L/21 (2006.01) Branden et al., Introduction to Protein Structure, Garland Publishing CI2N 5/10 (2006.01) Inc., New York, p. 247, 1991.* ck CI2P 2L/00 (2006.01) SEullins et al., (S.flypertension consists, : 48-55, 1992. C7H 2L/00 (2006.01) Mullins et al., J. Clin. Invest. 97(7): 1557-1560, 1996.* CI2N 9/14 (2006.01) Cameron, E., Molecular Biotechnology 7:253-265, 1997.* (52) U.S. Cl. Houdebine, L., Journal of Biotechnology 98: 145-160, 2002.* USPC ... 435/195; 435/320.1; 435/69. 1; 435/252.3: Phillips, A., J. Pharm. Pharmacology 53:1169-1174, 2001.* 435/325,536/23.2 Gardlik et al., Med. Sci. Monit. 11(4):RA110-121, 2005.* s Guo et al., PNAS 101(25):9205-9210, 2004.* (58) Field of Classification Search .................. 435/195, “The Second Symposium on Biological Imaging: New Dimensions 435/320.1, 325, 252.3, 69.1; 530/350; 536/23.2 in in Vivo imaging.” Lecturer Abstracts, obtained from www. See application file for complete search history. promega-rd.info/bioimage2003/abstracts/lecture/default.asp (Fri day, May 30, 2003) 5 pages. (56) References Cited Database EMBLEBI, Accession No. BD057138 (2004) 1 page, Affholter, J.A. et al., “Recombinant haloaliphatic dehalogenases”. Wayback Machine, http://www.promega-rd.info/bioimage2003/ab U.S. PATENT DOCUMENTS stracts/lecturer/default.asap (Mar. 17, 2007), 2 pages. 3,131,122 A 4, 1964 Freter 4,574,079 A 3, 1986 Gavras et al. (Continued) 4,818,807 A 4, 1989 Morita et al. 5,071.469 A 12, 1991 Artz Primary Examiner — Delia Ramirez 5,099,020 A 3, 1992 Grote et al. (74) Attorney, Agent, or Firm — Casimir Jones, S.C. 5,110,833. A 5, 1992 Mosbach 5,128.247 A 7, 1992 Koller (57) ABSTRACT 5,372,944. A 12/1994 Swanson The invention provides a mutant hydrolase protein with 5,476,770 A 12/1995 Pradelles enhanced kinetics and functional expression, as well as poly 5,503.977 A 4, 1996 Johnsson et al. nucleotides encoding the mutant proteins and methods of E. A E. Sists et al. using the polynucleotides and mutant proteins. 5,700.908 A 2, 1997 Ruoslahtietal. 29 Claims, 40 Drawing Sheets US 8.420,367 B2 Page 2 FOREIGN PATENT DOCUMENTS Chen, I. et al., “Site-specific labeling of proteins with small mol WO WO O2/083937 10, 2002 ecules in live cells.” Curr. Opin. Biotech. (2005) 16:35-40. WO WO 03/040096 5, 2003 Cheuk, K.L. et al., “Synthesis of optically active WO WO 2004/OO9788 1, 2004 poly(phenylacetylenes) containing amino acid pendent groups.” WO WO 2004/072232 8, 2004 Polym. Materials Sci. Eng. (2000) 82:56-57. WO WO 2006/093.529 9, 2006 Cohen, V.I. et al., “Synthesis of some substituted WO WO 2007/092579 8, 2007 dibenzodiazenpinones and pyridobenzodiazepinones. J. Heterocyc. WO WO 2008/O54821 5, 2008 Chem. (1998) 35:675-686. 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