group code species code species common name classification genome version source transcript version Source website EUD Aco Aquilegia coerulea columbine Eudicotyledons (Ranunculales) JGI v1 Phytozome 11 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html BRA Aly Arabidopsis lyrata lyrate rockcress Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 11 JGI V1.0 https://phytozome.jgi.doe.gov/pz/portal.html BRA Ath Arabidopsis thaliana (Columbia) thale cress Eudicotyledons (Rosids – Malvids – Brassicales) TAIR10 Araport Araport11 https://araport.org EUD Bvu Beta vulgaris sugar beet Eudicotyledons (Caryophyllales) RefBeet-1.2.2 Ensembl RefBeet-1.2.2 https://plants.ensembl.org/info/website/ftp/index.html BRA Bst Boechera stricta drummond's rockcress Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 10 JGI v1.3 https://phytozome.jgi.doe.gov/pz/portal.html BRA Bra Brassica rapa turnip mustard Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 10 JGI v1.2 https://phytozome.jgi.doe.gov/pz/portal.html BRA Cgr Capsella grandiflora Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 10 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html BRA Cru Capsella rubella red shepherd's purse Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 10 ASGPB v0.4 https://phytozome.jgi.doe.gov/pz/portal.html BRA Cpa Carica papaya papaya Eudicotyledons (Rosids – Malvids - Brassicales) JGI v1 Phytozome 11 JGI v1.0 https://phytozome.jgi.doe.gov/pz/portal.html MAL Ccl Citrus clementina clementine Eudicotyledons (Rosids – Malvids - Sapindales) JGI v1 Phytozome 10 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html MAL Csi Citrus sisensis orange Eudicotyledons (Rosids – Malvids - Sapindales) JGI v1 Phytozome 10 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html FAB Csa Cucumis sativus cucumber Eudicotyledons (Rosids – Fabids - Cucurbitales) JGI v1 Phytozome 10 JGI v1.0 https://phytozome.jgi.doe.gov/pz/portal.html MAL Egr Eucalyptus grandis rose gum Eudicotyledons (Rosids – Malvids - Myrtales) JGI v1 Phytozome 10 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html BRA Esa Eutrema salsugineum salt cress Eudicotyledons (Rosids – Malvids – Brassicales) JGI v1 Phytozome 10 JGI v1 https://phytozome.jgi.doe.gov/pz/portal.html FAB Fve Fragaria vesca strawberry Eudicotyledons (Rosids – Fabids - Rosales) JGI v1 Phytozome 10 JGI v1.1 https://phytozome.jgi.doe.gov/pz/portal.html FAB Gma Glycine max soybean Eudicotyledons (Rosids – Fabids - Fabales) JGI v2.0 Phytozome 10 Wm82.a2.v1 https://phytozome.jgi.doe.gov/pz/portal.html MAL Gra Gossypium raimondii cotton Eudicotyledons (Rosids – Malvids - Malvales) JGI v2.1 Phytozome 10 JGI v2.0 https://phytozome.jgi.doe.gov/pz/portal.html FAB Lja Lotus japonicus lotus Eudicotyledons (Rosids – Fabids - Fabales) BGl v1.0 KDRI JGI v1.0 ftp://ftp.kazusa.or.jp/pub/lotus/lotus_r3.0/ FAB Mdo Malus domestica apple Eudicotyledons (Rosids – Fabids - Rosales) JGI v1 Phytozome 10 JGI v1.0 https://phytozome.jgi.doe.gov/pz/portal.html FAB Mes Manihot esculenta cassava Eudicotyledons (Rosids – Fabids - Malpighiales) JGI v6 Phytozome 11 JGI v6.1 https://phytozome.jgi.doe.gov/pz/portal.html FAB Mtr Medicago truncatula barrel medic Eudicotyledons (Rosids – Fabids - Fabales) Mt4.0 Phytozome 10 Mt4.0v1 https://phytozome.jgi.doe.gov/pz/portal.html AST Mgu Mimulus guttatus monkey flower Eudicotyledons (Asterids - Lamiales) JGI v2.0 Phytozome 10 JGI v2.0 https://phytozome.jgi.doe.gov/pz/portal.html MON Osa Oryza sativa rice Liliopsida/Monocotyledons (Poales) Rice Genome Annotation v7.0 RGAP v7.0 http://rice.plantbiology.msu.edu/ FAB Pvu Phaseolus vulgaris common bean Eudicotyledons (Rosids – Fabids - Fabales) JGI v1.0 Phytozome 11 JGI v1.0 https://phytozome.jgi.doe.gov/pz/portal.html FAB Ptr Populus trichocarpa poplar Eudicotyledons (Rosids – Fabids - Malpighiales) JGI v3.0 Phytozome 11 JGI v3.0 https://phytozome.jgi.doe.gov/pz/portal.html FAB Ppe Prunus persica peach Eudicotyledons (Rosids – Fabids - Rosales) JGI v1.0 Ensembl JGI v1.0 https://plants.ensembl.org/info/website/ftp/index.html FAB Rco Ricinus communis castor bean Eudicotyledons (Rosids – Fabids - Malpighiales) TIGR.0.1 Phytozome 11 JGI v0.1 https://phytozome.jgi.doe.gov/pz/portal.html FAB Spu Salix purpurea shrub willow Eudicotyledons (Rosids – Fabids - Malpighiales) JGI v1.0 Phytozome 11 JGI v1.0 https://phytozome.jgi.doe.gov/pz/portal.html AST Sly Solanum lycopersicum tomato Eudicotyledons (Asterids - Solanales) ITAGv2.40 Ensembl ITAGv2.40 https://plants.ensembl.org/info/website/ftp/index.html AST Stu Solanum tuberosum potato Eudicotyledons (Asterids - Solanales) JGI v3.0 Phytozome 11 JGI v3.4 https://phytozome.jgi.doe.gov/pz/portal.html MAL Tca Theobroma cacao cocoa Eudicotyledons (Rosids – Malvids - Malvales) CGD v1.0 Ensembl CGD v1.0 https://plants.ensembl.org/info/website/ftp/index.html EUD Vvi Vitis vinifera grape Eudicotyledons (Rosids - Vitales) Genoscope 12x Ensembl Genoscope 12x https://plants.ensembl.org/info/website/ftp/index.html.