Article from: Omics in Plant Disease Resistance Current Issues in Molecular Biology. Volume 19 (2016). Focus Issue DOI: http://dx.doi.org/10.21775/9781910190357 Edited by: Vijai Bhadauria Crop Development Centre/Dept. of Plant Sciences 51 Campus Drive University of Saskatchewan Saskatoon, SK S7N 5A8 Canada. Tel: (306) 966-8380 (Office), (306) 716-9863 (Cell) Email: [email protected] Copyright © 2016 Caister Academic Press, U.K. www.caister.com All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the publisher. No claim to original government works. Curr. Issues Mol. Biol. Vol. 19. (2016) Omics in Plant Disease Resistance. Vijai Bhadauria (Editor). !i Current publications of interest Microalgae Next-generation Sequencing Current Research and Applications Current Technologies and Applications Edited by: MN Tsaloglou Edited by: J Xu 152 pp, January 2016 xii + 160 pp, March 2014 Book: ISBN 978-1-910190-27-2 £129/$259 Book: ISBN 978-1-908230-33-1 £120/$240 Ebook: ISBN 978-1-910190-28-9 £129/$259 Ebook: ISBN 978-1-908230-95-9 £120/$240 The latest research and newest approaches to the study of "written in an accessible style" (Zentralblatt Math); microalgae. "recommend this book to all investigators" (ChemMedChem) Bacteria-Plant Interactions Advanced Research and Future Trends Omics in Soil Science Edited by: J Murillo, BA Vinatzer, RW Jackson, et al. Edited by: P Nannipieri, G Pietramellara, G Renella x + 228 pp, March 2015 x + 198 pp, January 2014 Book: ISBN 978-1-908230-58-4 £159/$319 Book: ISBN 978-1-908230-32-4 £159/$319 Ebook: ISBN 978-1-910190-00-5 £159/$319 Ebook: ISBN 978-1-908230-94-2 £159/$319 "an up-to-date overview" (Ringgold) "a recommended reference" (Biotechnol. Agrom. Soc. Environ.); "a must for Soil scientists" (Fungal Diversity) Microarrays Current Technology, Innovations and Applications Edited by: Z He Genome Analysis x + 246 pp, August 2014 Current Procedures and Applications Book: ISBN 978-1-908230-49-2 £159/$319 Edited by: MS Poptsova Ebook: ISBN 978-1-908230-59-1 £159/$319 xiv + 374 pp, January 2014 "a valuable and useful source ... Book: ISBN 978-1-908230-29-4 £159/$319 recommended" (Biotechnol. Agron. Soc. Environ.) Ebook: ISBN 978-1-908230-68-3 £159/$319 An up-to-date and comprehensive overview of next- generation sequencing data analysis, highlighting problems Metagenomics of the Microbial Nitrogen and limitations, applications and developing trends in Cycle various fields of genome research. Theory, Methods and Applications Edited by: D Marco xiv + 268 pp, September 2014 RNA Editing Book: ISBN 978-1-908230-48-5 £159/$319 Current Research and Future Trends Ebook: ISBN 978-1-908230-60-7 £159/$319 Edited by: S Maas "a strong overview" (Ringgold) viii + 240 pp, June 2013 Book: ISBN 978-1-908230-23-2 £159/$319 Ebook: ISBN 978-1-908230-88-1 £159/$319 Proteomics "an essential book" (Doodys) Targeted Technology, Innovations and Applications Edited by: M Fuentes, J LaBaer x + 186 pp, September 2014 Real-Time PCR Book: ISBN 978-1-908230-46-1 £159/$319 Advanced Technologies and Applications Ebook: ISBN 978-1-908230-62-1 £159/$319 Edited by: NA Saunders, MA Lee "many excellent chapters" (Doodys) viii + 284 pp, July 2013 Book: ISBN 978-1-908230-22-5 £159/$319 Ebook: ISBN 978-1-908230-87-4 £159/$319 Applied RNAi "an invaluable reference" (Doodys); "wide range of real From Fundamental Research to Therapeutic time PCR technologies" (Food Sci Technol Abs); "I was Applications impressed by this text" Aus J Med Sci Edited by: P Arbuthnot, MS Weinberg x + 252 pp, June 2014 Bionanotechnology Book: ISBN 978-1-908230-43-0 £159/$319 Ebook: ISBN 978-1-908230-67-6 £159/$319 Biological Self-assembly and its Applications "Essential reading" (Biotechnol Agron Soc Environ); Edited by: BHA Rehm "recommended" (Fungal Diversity); "an excellent x + 310 pp, February 2013 resource" (Doodys) Book: ISBN 978-1-908230-16-4 £159/$319 Ebook: ISBN 978-1-908230-81-2 £159/$319 "the most striking and successful approaches" Book News Curr. Issues Mol. Biol. Vol. 19. (2016) Omics in Plant Disease Resistance. Vijai Bhadauria (Editor). !iv Curr. Issues Mol. Biol. (2016) 19: 43-52. 6. Planthopper-Borne Viruses in Rice Cui et al. Rice Responses and Resistance to Planthopper-Borne Viruses at Transcriptomic and Proteomic Levels Feng Cui§, Wan Zhao§, Lan Luo and Le Kang* southern Vietnam were severely affected by viral diseases, resulting in the loss of 828,000 tons of rice valued at US State Key Laboratory of Integrated Management of Pest $120 million (Du et al., 2007). To ensure global food Insects and Rodents, Institute of Zoology, Chinese supplies for meeting the challenge of continuous population Academy of Sciences, Beijing, China growth, controlling the outbreaks of various rice viruses is §Contributed equally to this work crucial. *Corresponding author. Email: [email protected] DOI: http://dx.doi.org/10.21775/9781910190357.06 More than 30 viruses are reported to infect rice (Abo and Sy, 1998). Most rice viruses are transmitted by hemipteran Abstract insects (Huo et al., 2014), which are efficient vectors Rice (Oryza sativa) is one of the most important cereal because they are able to transmit viruses into specific plant crops in the world, especially in Asian areas. Rice virus tissues using their piercing-sucking mouthparts. In Asia, diseases are considered as the most serious threat to rice eight rice viruses are transmitted by planthoppers or yields. Most rice viruses are transmitted by hemipteran leafhoppers in a persistent manner: Rice stripe virus (RSV, insects such as planthoppers and leafhoppers. In Asia five Tenuivirus), Rice dwarf virus (RDV, Reoviridae), Rice gall rice viruses are transmitted mainly by three planthopper dwarf virus (RGDV, Reoviridae), Rice ragged stunt virus species in a persistent manner: Rice stripe virus, Rice (RRSV, Reoviridae), Rice yellow stunt virus (RYSV, black-streaked dwarf virus, Rice ragged stunt virus, Rice Rhabdoviridae), Rice grassy stunt virus (RGSV, grassy stunt virus, and Southern rice black-streaked dwarf Tenuivirus), Rice black-streaked dwarf virus (RBSDV, virus. In rice antivirus studies, several individual genes Reoviridae), and Southern rice black-streaked dwarf virus have been shown to function in rice resistance to viruses. (SRBSDV, Reoviridae) (Uehara-Ichiki et al., 2013). RSV Since plant responses to viral infection are complex, and RBSDV are transmitted by the small brown system-level omic studies are required to fully understand planthopper Laodelphax striatellus (Fallen). RRSV and the responses. Recently more and more omic studies have RGSV are transmitted by the brown planthopper appeared in the literatures on relationships between Nilaparvata lugens (Stål). SRBSDV is transmitted by the planthoppers and viruses, employing microarray, RNA-Seq, whitebacked planthopper Sogatella furcifera (Horvath) small RNA deep sequencing, degradome sequencing, and (Hibino, 1996). In America, Rice hoja blanca virus (RHBV, proteomic analysis. In this paper, we review the current Tenuivirus) is the most important rice virus and transmitted knowledge and progress of omic studies in rice plant by the planthopper Sogatodes orizicola (Muir) in a responses and resistance to four planthopper-borned persistent manner (Hibino, 1996). In Africa, Rice stripe viruses. We also discuss progress in the omic study of the necrosis virus (RSNV, Benyvirus) and Rice yellow mottle interactions of planthoppers and rice viruses. Future virus (RYMV, Sobemovirus) are transmitted by the soil- research directions and translational applications of inhabiting fungal pathogen Polymyxa graminis and leaf fundamental knowledge of virus-vector-rice interactions are beetles, respectively (Uehara-Ichiki et al., 2013). proposed. Plants have developed elaborate and effective defense Introduction mechanisms to resist infection by viruses, including Rice (Oryza sativa) is one of the most important cereal hypersensitive and necrotic resistance, systemic necrosis crops in the world, second only to corn in worldwide crop response, systemic acquired resistance, R gene-mediated production. Rice crop is planted in almost all Asian response, ubiquitin proteasome system-mediated countries, in most of South and Central America, and in resistance, and RNA silencing (Soosaar et al., 2005; some of central and eastern Africa. More than 80% of the Mandadi and Scholthof, 2013; Palukaitis and Carr, 2008). world's rice is cultivated in South, East and South-East More significant advances in the understanding of plant Asian regions (Welch et al., 2010). The average yield of innate immunity resistance to viruses have been gained unhulled rice in Mainland China is 130 million metric tons mainly from the model systems of dicotyledonous plants, (MMt), which account for about 36% of the world such as tobacco Nicotiana benthamiana, Arabidopsis production. Other major rice production areas are located thaliana, and tomato Solanum lycopersicum (Mandadi and in India (95 MMt), Indonesia (37 MMt), and Bangladesh (30 Scholthof, 2013). However, quite few studies focus on MMt). Therefore, any disease that reduces rice yields viruses that infect monocot plants such as rice and significantly affects the well-being of the Asian population gramineous plants. Several individual genes have been and beyond. Rice virus disease is known as rice cancer shown to function in rice resistance to viruses. A recessive and causes a serious threat to rice production in South- resistance gene, eukaryotic translation initiation factor East Asian countries (Ou, 1985). For example, from 2005 eIF(iso)4G1, confers resistance against Rice yellow mottle to 2006, more than 485,000 ha of rice plantation area in virus (RYMV) (Albar et al., 2006) by a mutation disrupting Curr. Issues Mol. Biol. Vol. 19. (2016) Omics in Plant Disease Resistance. Vijai Bhadauria (Editor). !43 6. Planthopper-Borne Viruses in Rice Cui et al. its interaction with the viral genome-linked protein (VPg) A systemic gene analysis method, combining gene (Hébrard et al., 2010).