NBAF Complete Bibliography Please note that the list of publications for 2020 will be completed March 2021. 2020 Joint 1. Pascoal S, Risse JE, Zhang X, Blaxter M, Cezard T, Challis RJ, Gharbi K, Hunt J, Kumar S, Langan E, Liu X, Rayner JG, Ritchie MG, Snoek BL, Trivedi U, Bailey NW (2020) Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. Evolution Letters 4. (10.1002/evl3.148) (NBAF-EL) NBAF-E 1. Borrell JS, Jasmin Zohren, Richard A. Nichols, Richard J. A. Buggs (2020). Genomic assessment of local adaptation in dwarf birch to inform assisted gene flow. Evolutionary Applications 31, 161- 175. (10.1111/eva.12883) 2. Gervais L, Hewison AJM, Morellet N, Bernard M, Merlet J, Cargnelutti B, Chaval Y, Pujol B, Quéméré E (2020) Pedigreefree quantitative genetic approach provides evidence for heritability of movement tactics in wild roe deer. Journal of Evolutionary Biology, Early View. (10.1111/jeb.13594) 3. Lerebours A, Robson S, Sharpe C, Smith JT (2020) Subtle effects of radiation on embryo development of the 3-spined stickleback. Chemosphere 248, 126005. (10.1016/j.chemosphere.2020.126005) 4. Truebano M, Robertson SD, Houston SJS, Spicer JI (2020) Ontogeny of osmoregulation in the brackishwater amphipod Gammarus chevreuxi. Journal of Experimental Marine Biology and Ecology 524, 51312. (10.1016/j.jembe.2020.151312) NBAF-L 1. Boylan AA, Stewart DI, Graham JT, Burke IT (2020) The behaviour of low molecular weight organic carbon-14 containing compounds in contaminated groundwater during denitrification and iron-reduction. Geomicrobiology Journal. (10.1080/01490451.2020.1728442) 2. Broniewski JM, Meaden S, Paterson S, Buckling A, Westra ER (2020) The effect of phage genetic diversity on bacterial resistance evolution. ISME Journal. (10.1038/s41396-019-0577-7) 3. Chevallereau A, Meaden S, Fradet O, Landsberger M, Maestri A, Biswas A, Gandon S, van Houte S, Westra ER (2020) Exploitation of the cooperative behaviors of anti-CRISPR phages. Cell Host Microbe 27, 189-198.e6. (10.1016/j.chom.2019.12.004) 4. Cole G, Ditchfield PW, Dulias K, Edwards CJ, Reynolds A, Waldron T (2020) Summary justice or the King’s will? The first case of formal facial mutilation from Anglo-Saxon England. Antiquity. 5. Czaja W, Bensasson D, Ahn HW, Garfinkel D, Bergman C (2019) Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. Plos Genetics (10.1371/journal.pgen.1008632) 6. Horrocks CA, Newsham KK, Cox F, Garnett MH, Robinson CH, Dungait JAJ (2020) Predicting climate change impacts on maritime Antarctic soils: a space-for-time substitution study. Soil Biology & Biochemistry 141, 107682. (10.1016/j.soilbio.2019.107682) 7. Lilley TM, Wilson IW, Field KA, Reeder DA, Vodzak ME, Turner G, (…) Paterson S (2020) Genome-wide changes in genetic diversity in a population of Myotis lucifugus affected by white- nose syndrome. (10.1101/764647) 8. Llewellyn CA, Airs RL, Farnham G, Greig C (in press) Synthesis, regulation and degradation of carotenoids under low level UV-B radiation in the filamentous cyanobacterium Chlorogloeopsis fritschii PCC 6912. Frontiers in Microbiology. (10.3389/fmicb.2020.00163). 1 9. Rollie C, Chevallereau A, Watson BNJ, Chyou TY, Fradet O, McLeod I, Fineran PC, Brown CM, Gandon S, Westra ER (2020) Targeting of temperate phages drives loss of type I CRISPR-Cas systems. Nature 578, 149-153. (10.1038/s41586-020-1936-2) NBAF-S 1. Doble CJ, Hipperson H, Salzburger W, Horsburgh G, Mwita C, Murrell DJ, Day JJ (2020) Testing the performance of eDNA metabarcoding for surveying highly diverse tropical fish communities: A case study from Lake Tanganyika. Environmental DNA (10.1002/edn3.43) 2. dos Remedios N, Küpper C, Székely T, Zefania S, Burns F, Bolton M, Lee PLM (2020) Genetic structure among Charadrius plovers on the African mainland and islands of Madagascar and St Helena. Ibis 162, 104-118. (10.1111/ibi.12694) 3. D’Urban Jackson J, Bruford MW, Székely T, DaCosta J, Sorenson MD, Edwards SV, Russo IRM, Maher K, Cruz-López M, Galindo-Espinosa D, De Sucre-Medrano AE, Cavitt J, Pruner R, Morales AL, Gonzalez O, Burke T, Küpper C (2020) Population differentiation and demography of the threatened snowy plover Charadrius nivosus estimated by four different genetic markers. Conservation Genetics (10.1007/s10592-020-01256-8). 4. Finnegan SR, Nitsche L, Fowler K, Pomiankowski A (2020) Does meiotic drive alter male mate preference? Behavioural Ecology 31, 194-201. (10.1093/beheco/arz176) 5. Giraldo-Deck L, Goymann W, Safari I, Dawson DA, Stocks M, Burke T, Lank D, Kuepper C (2020) Development of intraspecific size variation in black coucals, white-browed coucals and ruffs from hatching to fledging. Journal of Avian Biology. In press. (10.1111/jav.02440) 6. Lieber L, Hall G, Hall J, Berrow S, Johnston E, Gubili C, Sarginson J, Francis M, Dufy C, Wintner SP, Doherty PD, Godley BJ, Hawkes LA, Witt MJ, Henderson SM, de Sabata E, Shivji MS, Dawson DA, Sims DW, Jones CS, Noble LR (2020) Spatio-temporal genetic tagging of a cosmopolitan planktivorous shark provides insight to gene flow, temporal variation and site- specific re-encounters. Nature Scientific Reports 10, 1661. (10.1038/s41598-020-58086-4) 7. Meade L, Finnegan SR, Kad R, Fowler K, Pomiankowski A (2020) Maintenance of fertility in the face of meiotic drive. American Naturalist 195, 743-751. (10.1086/707372) 8. Orland C, Yakimovich KM, Mykytczuk NCS, Basiliko N, Tanentzap AJ (2020) Think global, act local: The small scale environment mainly influences microbial community development and function in lake sediment. Limnology & Oceanography 65, S88-S100. (10.1002/lno.11370) 9. Langley EJG, Adams G, Beardsworth CE, Dawson DA, Laker PR, van Horik JO, Whiteside MA, Wilson AJ, Madden JR (2020) Heritability and correlations among learning and inhibitory control traits Behavioral Ecology araa029. (10.1093/beheco/araa029) Theses 1. Doble CJ (2020) PhD thesis (UCL) Testing the potential of environmental DNA methods for surveying Lake Tanganyika’s highly diverse fish communities. (NBAF-S) 2. Garrett L (2020) PhD Thesis (University of Birmingham) From population to individual: Colony dynamics and structure in time and space of a highly social seabird. (NBAF-S) 3. Sendell-Price AT (2020) PhD thesis (University of Oxford) The genomics of diversification in South Pacific silvereyes (Zosterops lateralis). (NBAF-S) 4. van Lieshout HJ (2020) PhD thesis (University of Leeds) Early-life effects on telomere dynamics in European badgers (Meles meles). (NBAF-S) 2 2019 [Joint] 1. Wong ELY, Nevado B, Osborne OG, Papadopulos AST, Bridle JR, Hiscock SJ, Filatov DA (2019) Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna. Molecular Ecology 29, 394-412. (10.1111/mec.15319) (NBAF-EL) [NBAF-B] 1. MacAllister S, Mencuccini M, Sommer U, Engel J, Hudson A, Salmon Y, Dexter KG (2019) Drought-induced mortality in Scots pine: opening the metabolic black box. Tree Physiology 39, 1358-1370. (10.1093/treephys/tpz049) [NBAF-E] 1. Bebane P, Hunt BJ, Pegoraro M, Jones AM, Marshall H, Rosato E, Mallon EB (2019) The effects of the neonicotinoid imidacloprid on gene expression and DNA methylation in the buff-tailed bumblebee Bombus terrestris. Proceedings of the Royal Society B: Biological Sciences 286, 20190718. (10.1098/rspb.2019.0718) 2. Bergero R, Charlesworth D, Levsen N, Wolff K (2019) Arms races with mitochondrial genome soft sweeps in a gynodioecious plant, Plantago lanceolata. Molecular Ecology 28, 2772-2785 (10.1111/mec.15121) 3. Cook N, Parker DJ, Tauber E, Pannebakker BA, Shuker DM (2019) Validating the demethylating effects of 5-aza-2’-deoxycytidine in insects requires a whole-genome approach (A reply to Ellers et al.) American Naturalist 194, 432-438. (10.1086/704248) 4. Dunning LT, Olofsson JK, Parisod C, Choudhury RR, Moreno-Villena JJ, Yang Y, Dionora J, Quick WP, Park M, Bennetzen JL, Besnard G, Nosil P, Osborne CP, Christin PA (2019) Lateral transfers of large DNA fragments spread functional genes among grasses. Proceedings of the National Academy of Sciences 116, 4416-4425. (10.1073/pnas.1810031116) 5. Gervais L, Perrier C, Bernard M, Merlet J, Pemberton JM, Pujol B, Quéméré E (2019) RADsequencing for estimating genomic relatedness matrix based heritability in the wild: A case study in roe deer. Molecular Ecology Resources 19, 1205-1217. (10.1111/1755-0998.13031) 6. Hearn J, Blaxter M, Schönrogge K, Nieves-Aldrey JL, Pujade-Villar J, Huguet E, Drezen JM, Shorthouse JD, Stone GN (2019) Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp. PLoS Genetics 15, e1008398. (10.1371/journal.pgen.1008398) 7. Hearn J, Pearson M, Blaxter M, Wilson PJ, Little TJ (2019) Genome-wide methylation is modified by caloric restriction in Daphnia magna. BMC Genomics 20, 197. (10.1186/s12864-019- 5578-4) 8. Houston RD, Macqueen DJ (2019) Atlantic salmon (Salmo salar L.) Genetics in the 21st century: taking leaps forward in aquaculture and biological understanding. Animal Genetics 50, 3-14. (10.1111/age.12748) 9. Hunt BJ, Mallon EB, Rosato E (2019) In silico identification of a molecular circadian system with novel features in the crustacean model organism Parhyale hawaiensis. Frontiers in Physiology 10, 1325. (10.3389/fphys.2019.01325) 10. Kauranen H, Kinnunen J, Hiillos AL Lankinen P, Hopkins D, Wiberg RAW, Ritchie MG, Hoikkala A (2019) Selection for reproduction under short photoperiods changes diapause- associated traits and induces widespread genomic divergence. Journal of Experimental Biology 222, 205831 (10.1242/jeb.205831). 11. Mackintosh A, Laetsch DR, Hayward A, Charlesworth B, Waterfall M, Vila R, Lohse K (2019) The determinants of genetic diversity in butterflies. Nature Communication 10, 3466. (10.1038/s41467-019-11308-4) 12.