Mouse Rabac1 Knockout Project (CRISPR/Cas9)

Mouse Rabac1 Knockout Project (CRISPR/Cas9)

<p><a href="/goto?url=https://www.alphaknockout.com" target="_blank">https://www.alphaknockout.com </a></p><p><strong>Mouse Rabac1 Knockout Project (CRISPR/Cas9) </strong></p><p><strong>Objective: </strong></p><p>To create a Rabac1 knockout Mouse model (C57BL/6J) by CRISPR/Cas-mediated genome engineering. </p><p><strong>Strategy summary: </strong></p><p>The Rabac1 gene (NCBI Reference Sequence: NM_010261 ; Ensembl: ENSMUSG00000003380 ) is located on Mouse chromosome 7. 5 exons are identified, with the ATG start codon in exon 1 and the TAA stop codon in exon 5 (Transcript: ENSMUST00000076961). Exon 1~5 will be selected as target site. Cas9 and gRNA will be co-injected into fertilized eggs for KO Mouse production. The pups will be genotyped by PCR followed by sequencing analysis. </p><p><strong>Note: </strong></p><p>Exon 1 starts from about 0.18% of the coding region. Exon 1~5 covers 100.0% of the coding region. The size of effective KO region: ~2657 bp. The KO region does not have any other known gene. </p><p>Page 1&nbsp;of 8 </p><p><a href="/goto?url=https://www.alphaknockout.com" target="_blank">https://www.alphaknockout.com </a></p><p><strong>Overview of the Targeting Strategy </strong></p><p><strong>Wildtype allele </strong></p><ul style="display: flex;"><li style="flex:1"><strong>gRNA region </strong></li><li style="flex:1"><strong>gRNA region </strong></li></ul><p></p><p></p><ul style="display: flex;"><li style="flex:1">5' </li><li style="flex:1">3' </li></ul><p></p><p></p><ul style="display: flex;"><li style="flex:1"><strong>1</strong></li><li style="flex:1"><strong>2</strong></li><li style="flex:1"><strong>3</strong></li><li style="flex:1"><strong>4</strong></li><li style="flex:1"><strong>5</strong></li></ul><p></p><p><strong>Legends </strong></p><p></p><ul style="display: flex;"><li style="flex:1">Exon of mouse Rabac1 </li><li style="flex:1">Knockout region </li></ul><p></p><p>Page 2&nbsp;of 8 </p><p><a href="/goto?url=https://www.alphaknockout.com" target="_blank">https://www.alphaknockout.com </a></p><p><strong>Overview of the Dot Plot (up) </strong></p><p><strong>Window size: 15 bp </strong></p><p></p><ul style="display: flex;"><li style="flex:1">Forward </li><li style="flex:1">Reverse Complement </li></ul><p></p><p><strong>Note: </strong>The 2000 bp section upstream of start codon is aligned with itself to determine if there are tandem repeats. No significant tandem repeat is found in the dot plot matrix. So this region is suitable for PCR screening or sequencing analysis. </p><p><strong>Overview of the Dot Plot (down) </strong></p><p><strong>Window size: 15 bp </strong></p><p></p><ul style="display: flex;"><li style="flex:1">Forward </li><li style="flex:1">Reverse Complement </li></ul><p></p><p><strong>Note: </strong>The 2000 bp section downstream of stop codon is aligned with itself to determine if there are tandem repeats. Tandem repeats are found in the dot plot matrix. The gRNA site is selected outside of these tandem repeats. </p><p>Page 3&nbsp;of 8 </p><p><a href="/goto?url=https://www.alphaknockout.com" target="_blank">https://www.alphaknockout.com </a></p><p><strong>Overview of the GC Content Distribution (up) </strong></p><p><strong>Window size: 300 bp </strong></p><p>Summary: Full Length(2000bp) | A(25.65% 513) | C(27.7% 554) | T(25.3% 506) | G(21.35% 427) </p><p><strong>Note: </strong>The 2000 bp section upstream of start codon is analyzed to determine the GC content. No significant high GC-content region is found. So this region is suitable for PCR screening or sequencing analysis. </p><p><strong>Overview of the GC Content Distribution (down) </strong></p><p><strong>Window size: 300 bp </strong></p><p>Summary: Full Length(2000bp) | A(24.65% 493) | C(26.35% 527) | T(22.45% 449) | G(26.55% 531) </p><p><strong>Note: </strong>The 2000 bp section downstream of stop codon is analyzed to determine the GC content. No significant high GC-content region is found. So this region is suitable for PCR screening or sequencing analysis. </p><p>Page 4&nbsp;of 8 </p><p><a href="/goto?url=https://www.alphaknockout.com" target="_blank">https://www.alphaknockout.com </a></p><p><strong>BLAT Search Results (up) </strong></p><p>QUERY SCORE&nbsp;START END&nbsp;QSIZE IDENTITY&nbsp;CHROM <br>-------------------------------------------------------------------------------------------------------------- <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:24972583-24974582&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=24972582&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr7&amp;l=24972582&amp;r=24974582&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq 2000&nbsp;1 2000 2000&nbsp;100.0% chr7&nbsp;24972583 24974582&nbsp;2000 <br>+ 126146270&nbsp;126146408 <br>83003775 83003907 </p><ul style="display: flex;"><li style="flex:1">STRAND START </li><li style="flex:1">END SPAN </li></ul><p>-</p><p><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr10:126146270-126146408&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=126146269&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr10&amp;l=126146269&amp;r=126146408&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr3:83003775-83003907&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=83003774&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr3&amp;l=83003774&amp;r=83003907&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr4:103181280-103181412&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=103181279&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr4&amp;l=103181279&amp;r=103181412&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr8:128708275-128708410&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=128708274&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr8&amp;l=128708274&amp;r=128708410&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr4:118327394-118327527&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=118327393&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr4&amp;l=118327393&amp;r=118327527&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:62109451-62109573&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=62109450&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr11&amp;l=62109450&amp;r=62109573&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:157422345-157422537&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=157422344&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr1&amp;l=157422344&amp;r=157422537&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr14:20983029-20983161&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=20983028&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr14&amp;l=20983028&amp;r=20983161&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr2:132207057-132207171&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=132207056&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr2&amp;l=132207056&amp;r=132207171&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr12:25151378-25151509&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=25151377&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr12&amp;l=25151377&amp;r=25151509&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chrX:7636566-7636697&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=7636565&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chrX&amp;l=7636565&amp;r=7636697&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:126222317-126222448&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=126222316&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr7&amp;l=126222316&amp;r=126222448&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:6197536-6197676&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=6197535&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr11&amp;l=6197535&amp;r=6197676&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr4:118966270-118966393&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=118966269&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr4&amp;l=118966269&amp;r=118966393&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr18:32076461-32076582&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=32076460&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr18&amp;l=32076460&amp;r=32076582&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr5:128062550-128062681&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=128062549&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr5&amp;l=128062549&amp;r=128062681&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:120637935-120638060&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=120637934&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr11&amp;l=120637934&amp;r=120638060&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr12:54809763-54814142&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=54809762&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr12&amp;l=54809762&amp;r=54814142&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:102966181-102966294&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+../trash/hgSs/hgSs_genome_6b539_4c31f0.fa&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=102966180&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b539_4c31f0.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b539_4c31f0.fa+YourSeq&amp;c=chr11&amp;l=102966180&amp;r=102966294&amp;db=mm10&amp;hgsid=796030441_m6n6wOcFQhFxAzkr7vwjR5lJp4lM" target="_blank">details </a>YourSeq </p><p>98 95 89 88 88 88 88 87 86 85 85 84 84 84 83 83 83 82 82 <br>3 147&nbsp;2000 3 136&nbsp;2000 2 134&nbsp;2000 7 144&nbsp;2000 1 134&nbsp;2000 2 121&nbsp;2000 2 131&nbsp;2000 2 132&nbsp;2000 <br>14 129&nbsp;2000 <br>2 134&nbsp;2000 <br>14 143&nbsp;2000 <br>2 134&nbsp;2000 7 143&nbsp;2000 8 131&nbsp;2000 1 121&nbsp;2000 5 134&nbsp;2000 2 126&nbsp;2000 <br>21 125&nbsp;2000 <br>8 121&nbsp;2000 <br>80.6% chr10 84.7% chr3 83.5% chr4 82.6% chr8 82.9% chr4 89.4% chr11 87.1% chr1 84.3% chr14 85.3% chr2 85.4% chr12 83.1% chrX 88.5% chr7 82.9% chr11 83.9% chr4 84.9% chr18 82.2% chr5 83.8% chr11 89.6% chr12 86.0% chr11 <br>139 133 133 136 134 123 193 133 115 132 132 132 141 124 122 132 126 <br>-- 103181280&nbsp;103181412 - 128708275&nbsp;128708410 - 118327394&nbsp;118327527 </p><ul style="display: flex;"><li style="flex:1">-</li><li style="flex:1">62109451 62109573 </li></ul><p>- 157422345&nbsp;157422537 <br>20983029 20983161 <br>- 132207057&nbsp;132207171 --+<br>25151378 25151509 <br>7636566 7636697 <br>- 126222317&nbsp;126222448 <br>6197536 6197676 <br>+ 118966270&nbsp;118966393 <br>32076461 32076582 <br>--+ 128062550&nbsp;128062681 + 120637935&nbsp;120638060 </p><ul style="display: flex;"><li style="flex:1">-</li><li style="flex:1">54809763 54814142&nbsp;4380 </li></ul><p>- 102966181&nbsp;102966294 114 </p><p><strong>Note: </strong>The 2000 bp section upstream of start codon is BLAT searched against the genome. No significant similarity is found. </p><p><strong>BLAT Search Results (down) </strong></p><p></p><ul style="display: flex;"><li style="flex:1">QUERY SCORE&nbsp;START END&nbsp;QSIZE IDENTITY&nbsp;CHROM STRAND START </li><li style="flex:1">END SPAN </li></ul><p>----------------------------------------------------------------------------------------------- </p><p><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:24967924-24969923&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=24967923&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr7&amp;l=24967923&amp;r=24969923&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 2000 </p><p></p><ul style="display: flex;"><li style="flex:1">1 2000 2000&nbsp;100.0% chr7&nbsp;- </li><li style="flex:1">24967924 24969923&nbsp;2000 </li></ul><p>63000526 63327033&nbsp;326508 44023490 44287514&nbsp;264025 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr10:63000526-63327033&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=63000525&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr10&amp;l=63000525&amp;r=63327033&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 272 237&nbsp;1652 2000 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr10:44023490-44287514&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=44023489&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr10&amp;l=44023489&amp;r=44287514&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 138 265 871&nbsp;2000 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr10:128403396-128403794&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=128403395&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr10&amp;l=128403395&amp;r=128403794&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 115 237 491&nbsp;2000 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:96564165-96898566&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=96564164&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr11&amp;l=96564164&amp;r=96898566&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 108 239 900&nbsp;2000 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:85175090-85175332&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=85175089&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr11&amp;l=85175089&amp;r=85175332&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 102 240 481&nbsp;2000 <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr8:25502961-25503526&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=25502960&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr8&amp;l=25502960&amp;r=25503526&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq 101 236 478&nbsp;2000 <br>92.0% chr10 - 84.5% chr10 - </p><ul style="display: flex;"><li style="flex:1">86.2% chr10 +&nbsp;128403396 128403794 </li><li style="flex:1">399 </li></ul><p>87.5% chr11 + 84.9% chr11 - 85.9% chr8&nbsp;- 84.1% chr7&nbsp;- <br>96564165 96898566&nbsp;334402 85175090 85175332 25502961 25503526 34318815 34319190 <br>243 566 376 214 567 288 372 301 318 487 </p><p><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:34318815-34319190&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=34318814&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr7&amp;l=34318814&amp;r=34319190&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr8:121845959-121846172&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=121845958&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr8&amp;l=121845958&amp;r=121846172&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr6:72639364-72639930&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=72639363&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr6&amp;l=72639363&amp;r=72639930&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:160861625-160861912&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=160861624&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr1&amp;l=160861624&amp;r=160861912&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:57699822-57700193&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=57699821&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr11&amp;l=57699821&amp;r=57700193&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:91432401-91432701&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=91432400&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr1&amp;l=91432400&amp;r=91432701&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr12:102298612-102298929&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=102298611&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr12&amp;l=102298611&amp;r=102298929&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr9:44269215-44269701&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=44269214&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr9&amp;l=44269214&amp;r=44269701&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:20364331-20751636&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=20364330&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr11&amp;l=20364330&amp;r=20751636&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr17:29114493-29114603&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=29114492&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr17&amp;l=29114492&amp;r=29114603&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr14:34215295-34215376&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=34215294&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr14&amp;l=34215294&amp;r=34215376&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr5:128372364-128372461&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=128372363&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr5&amp;l=128372363&amp;r=128372461&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq <a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:28190176-28190247&amp;db=mm10&amp;ss=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+../trash/hgSs/hgSs_genome_6b5c5_4c3360.fa&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">browser </a><a href="/goto?url=https://genome.ucsc.edu/cgi-bin/hgc?o=28190175&amp;g=htcUserAli&amp;i=../trash/hgSs/hgSs_genome_6b5c5_4c3360.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_6b5c5_4c3360.fa+YourSeq&amp;c=chr7&amp;l=28190175&amp;r=28190247&amp;db=mm10&amp;hgsid=796030549_AT2RgooyZqJnIanic0jGSuwy3aSc" target="_blank">details </a>YourSeq </p>

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