5 9 Luteibacter yeojuensis strain SU11 (Ga0078639_1004, 2640590121) 7 0 Luteibacter rhizovicinus DSM 16549 (Ga0078601_1039, 2631914223) 4 7 Luteibacter sp. UNCMF366Tsu5.1 (FG06DRAFT_scaffold00001.1, 2595447474) 5 5 Dyella japonica UNC79MFTsu3.2 (N515DRAFT_scaffold00003.3, 2558296041) 4 8 100 Rhodanobacter sp. Root179 (Ga0124815_151, 2699823700) 9 4 Rhodanobacter sp. OR87 (RhoOR87DRAFT_scaffold_21.22, 2510416040) Dyella japonica DSM 16301 (Ga0078600_1041, 2640844523) Dyella sp. OK004 (Ga0066746_17, 2609553531) 9 9 9 3 Xanthomonas fuscans (007972314) 100 Xanthomonas axonopodis (078563083) 4 9 Xanthomonas oryzae pv. oryzae KACC10331 (NC_006834, 637633170) 100 100 Xanthomonas albilineans USA048 (Ga0078502_15, 2651125062) 5 6 Xanthomonas translucens XT123 (Ga0113452_1085, 2663222128) 6 5 Lysobacter enzymogenes ATCC 29487 (Ga0111606_103, 2678972498) 100 Rhizobacter sp. Root1221 (056656680) Rhizobacter sp. Root1221 (Ga0102088_103, 2644243628) 100 Aquabacterium sp. NJ1 (052162038) Aquabacterium sp. NJ1 (Ga0077486_101, 2634019136) Uliginosibacterium gangwonense DSM 18521 (B145DRAFT_scaffold_15.16, 2515877853) 9 6 9 7 Derxia lacustris (085315679) 8 7 Derxia gummosa DSM 723 (H566DRAFT_scaffold00003.3, 2529306053) 7 2 Ideonella sp. B508-1 (I73DRAFT_BADL01000387_1.387, 2553574224) Zoogloea sp. LCSB751 (079432982) PHB-accumulating bacterium (PHBDraf_Contig14, 2502333272) Thiobacillus sp. 65-1059 (OJW46643.1) 8 4 Dechloromonas aromatica RCB (NC_007298, 637680051) 8 4 7 7 Dechloromonas sp. JJ (JJ_JJcontig4, 2506671179) Dechloromonas RCB 100 Azoarcus sp. KH32C (AP012304, 2563613793) Dechlorobacter hydrogenophilus LT-1 (LT1_c1, 2508501393) Candidatus Accumulibacter aalborgensis (SBT06972) 4 7 8 1 Methylovorus sp. MP688 chromosome (NC_014733, 649772731) 100 Methylotenera sp. G11 (GQ51DRAFT_unitig_0_quiver_dupTrim_10755.1, 2585895491) Methylotenera sp. 301 chromosome (NC_014207, 646831074) 100 Azoarcus sp. KH32C (AP012304, 2563611812) Azoarcus sp. KH32C (083903159) Prosthecomicrobium hirschii ATCC 27832 (Phi_scaffold00167, 2502379653) 100 Sinobacter flavus DSM 18980 (K343DRAFT_scaffold00006.6, 2527007432) 100 Singularimonas variicoloris DSM 15731 (H149DRAFT_scaffold00002.2, 2521804426) Solimonas aquatica DSM 25927 (Ga0070002_110, 2616681780) Nevskia ramosa DSM 11499 (G513DRAFT_scaffold00001.1, 2523410377) Erythrobacter sp. SG61-1L (Ga0100685_13, 2649615031) 100 Rhodanobacter thiooxydans LCS2 (AJXW01000032, 2538844664) 9 8 Rhodanobacter sp. 2APBS1 (R2APBS1_Contig319, 2506719248) 6 6 Rhodanobacter spathiphylli B39 (AJXT01000032, 2538834093) 9 2 Frateuria terrea CGMCC 1.7053 (IQ04DRAFT_scaffold00001.1, 2599169283) 4 8 100 Dyella ginsengisoli LA-4 (C693DRAFT_AMSF01000010_1.10, 2553029806) 7 3 Dyella thiooxydans ATSB10 (Ga0133357_11, 2687581785) 8 0 Dyella jiangningensis (038623940) 9 4 Rhodanobacter sp. C06 (OOG37668) 9 4 Rhodanobacter sp. B05 (077514108) 9 9 100 Rhodanobacter sp. C01 (077439889) Rudaea cellulosilytica DSM 22992 (F455DRAFT_scaffold00002.2, 2519940479) 100 Rhodanobacter sp. OR444 (RHOOR444DRAFT_NODE_26_len_4038_cov_467_575531.26, 2522338571) 9 0 Rhodanobacter sp. FW510-R12 (RhoFW510R12_5064.2546, 2585805519) 6 4 Thiomonas intermedia K12 chromosome (NC_014153, 646800198) 100 100 Thiomonas sp. str. 3As (FP475956, 651255703) 4 6 Thiomonas sp. CB2 (CDW96384) 100 Thiomonas bhubaneswarensis DSM 18181 (Ga0061069_103, 2616226325) 9 1 Thiomonas sp. FB-6, DSM 25805 (D466DRAFT_scaffold00001.1) Thiomonas 100 Thiomonas sp. FB-Cd, DSM 25617 (CD04DRAFT_scf7180000000014_quiver_quiver.5) Mizugakiibacter sediminis (GAP65883) 9 2 Novosphingobium sp. FSW06-99 (067617120) 100 Novosphingobium acidiphilum DSM 19966 (G404DRAFT_scaffold00003.3, 2523703545) 100 Novosphingobium sp. Fuku2-ISO-50 (067744063) 100 Novosphingobium naphthalenivorans (067734630) 9 7 Novosphingobium malaysiense (052223625) 7 4 Novosphingobium fuchskuhlense (067906227) Composite genome from Trout Bog Hypolimnion pan-assembly TBhypo.metabat.6717 (TH6717DRAFT_TBhypo_metabat_6717_10034064.36, 2583043224) 9 8 Alphaproteobacteria bacterium 64-11 (BGN85_02655, OJU07810) 7 6 9 8 Rhodopila sp. LVNP (Ga0132156_11, 2685829211) 4 6 100 Rhodopila sp. LVNP (Ga0132156_11, 2685831528) Acidisphaera rubrifaciens (048860060) Acetobacteraceae bacterium SCN 69-10 (ABS99_01785, ODU61985) 4 5 Bradyrhizobium lablabi GAS522 (Ga0132013_11, 2694655162) 8 1 Bradyrhizobium erythrophlei (074278193) 9 9 Bradyrhizobium erythrophlei GAS478 (Ga0132009_11, 2700926766) 9 9 9 2 Bradyrhizobium erythrophlei (074278395) 5 0 Bradyrhizobium erythrophlei GAS478 (Ga0132009_11, 2700928529) Bradyrhizobium sp. SEMIA 6208 (Ga0081870_1119, 2636530532) Bradyrhizobium erythrophlei GAS138 (Ga0131997_11, 2698418960) 4 7 Bradyrhizobium sp. STM 3843 (Ga0040047_gi365424980.24, 2597911083) 100 Bradyrhizobium sp. STM 3809 (NZ_CAFJ01000175, 2514440204) Bradyrhizobium sp. Gha (Ga0075231_103, 2653887682) 9 9 Bradyrhizobium sp. ORS278 (NC_009445, BRADO6286) 100 Rhodopseudomonas palustris WS17 (RPWS17_WS17_contig_153.153, RPWS17_04972) 9 2 Rhodopseudomonas palustris S55 (RPS55_01659) 100 100 Rhodopseudomonas palustris ATH 2.1.6, ATCC 17001 (RPATCC17001_02806) Rhodopseudomonas pseudopalustris DSM 123 (Ga0121172_103, 2671915913) 9 6 9 9 Rhodopseudomonas palustris BisB5 (NC_007958, 637963819) Bradyrhizobium sp. STM 3843 (Ga0040047_gi365421839.167, 2597913977) 100 Methylocapsa palsarum NE2 (Ga0116912_132, 2676342706) 100 Methylocapsa acidiphila B2 (MetacDRAFT_Scaffold1.2, 2510255561) Methylocystis bryophila (085771681) 7 6 Methylobacter sp. BBA5.1 (EK22DRAFT_scaffold00011.11, 2582536956) 9 6 Aerobic methanotroph, WIN4C from tailings pond WIP (PD1; 2522717648) 100 8 1 Methylobacter luteus IMV-B-3098T (MetluDRAFT_scaffold2.2, 2517428901) Methylobacter tundripaludum SV96 ctg233 (NZ_AEGW01000005, 648843130) 9 9 Composite genome from Trout Bog Epilimnion pan-assembly TBepi.metabat.5136 (TE5136DRAFT_TBepi_metabat_5136_1002297.139, 2582885061) 9 1 Methylococcaceae-21 (UID203) (Ga0081623_1188, 2634877808) 5 8 Methylovulum miyakonense HT12 (MetmiDRAFT_scaffold1.1, 2516960547) Methylococaceae sp. 73a (EK23DRAFT_scaffold00012.12, 2585139763) 100 Methylomonas sp. LWB (083386236) 100 Methylomonas koyamae (082885624) 100 Methylomonas scaffold9 (2574134454) 100 Methylomonas sp. 11b (scaffold1, 2516190406) 9 2 Methylomonas methanica (A1353_04640, OAI09603) 7 3 Methylomonas koyamae (A1356_04765, OAI29429) Methylogaea oryzae JCM 16910 (Ga0128369_1122, 2677968525) 9 0 Proteobacteria bacterium ST_bin16 (OQW81150) 100 100 Nitrosomonas sp. Nm120 (Ga0180021_11, 2727726885) 100 Nitrosomonas oligotropha Nm76 (Ga0105876_127, 2671671299) Proteobacteria bacterium SG_bin4 (OQW42842) Nitrosomonas sp. Is79A3 (NC_015731, 651002515) Nitrosomonas sp. Is79A3 (NC_015731, 651003225) 100 Nitrosolobus multiformis Nl4 (Ga0111718_121, 2671445702) 9 9 Nitrosolobus multiformis Nl13 (Ga0111715_135, 2671657233) 6 1 Nitrosospira sp. 56-18 (OJY08912) 100 Nitrosomonas sp. Nm34 (Ga0111714_1037, 2676386204) 5 4 Nitrosospira sp. APG3 (Ga0081662_178, 2636913632) Nitrosospira briensis C-128 (F822DRAFT_unitig_0_quiver_dupTrim_8202.1, 2588205070) 9 0 5 4 100 Nitrosospira sp. APG3 (Ga0081662_135, 2636912291) Crenothrix polyspora (SJM94235) Methylosarcina fibrata AML-C10 (A3OWDRAFT_scaffold1.1, 2517553761) Methylocaldum sp. 175 (JC06DRAFT_unitig_0_quiver.5, 2595102826) 7 4 Composite genome from Trout Bog Hypolimnion pan-assembly TBhypo.metabat.1380 (TH1380DRAFT_TH01379_TBL_comb47_HYPODRAFT_10003490.45, 2595262768) 100 Composite genome from Trout Bog Hypolimnion pan-assembly TBhypo.metabat.3552 (TH3552DRAFT_TBhypo_metabat_3552_10000949.11, 2582978841) Composite genome from Trout Bog Epilimnion pan-assembly TBepi.metabat.8031 (TE8031DRAFT_TBepi_metabat_8031_1014794.75, 2582897580) 100 Bradyrhizobium sp. LTSP885 (052833050) Bradyrhizobium sp. LTSPM299 (044591466) 8 2 Opitutus sp. GAS368 (Ga0132005_11, 2690566818) 100 Composite genome from Trout Bog Epilimnion pan-assembly TBepi.metabat.1800.v2 (TE01800DRAFT_TE01800_TBL_comb48_EPIDRAFT_1001966.59, 2595260104) Opitutae-129 (UID2982) (Ga0081615_1077, 2634852957) 5 1 Opitutus sp. GAS368 (Ga0132005_11, 2690565850) Tistlia consotaensis USBA 355 (Ga0111602_103, 2667905805) 4 6 Acidiphilium rubrum ATCC 35905 (Ga0104712_113, 2681880531) 100 Acidiphilium multivorum AIU301 (Apmu_0755_41, GAN75770) 100 Acidiphilium cryptum (081432845) 100 Acidocella facilis ATCC 35904 (T331DRAFT_scaffold00002.2, 2558109243) Acidocella sp. MX-AZ02 (AMPS01000188, 2534529065) 100 Acidocella aminolytica DSM 11237 (EJ11DRAFT_scaffold00022.22, 2585097958) 7 6 Burkholderia territorii (059807244) Burkholderia diffusa (059467121) 6 8 Burkholderia contaminans (071334897) Burkholderia lata (AOJ37486) 6 1Burkholderia pseudomultivorans (059482638) 4 1 Burkholderia cenocepacia DDS 22E-1 (Ga0059203_gi685643920.1, 2598452010) Burkholderia pseudomultivorans (AOI91739) Aquamicrobium sp. SK-2 (Ga0098313_1029, 2648568615) Burkholderia ubonensis (KVV32910) Cluster 2 9 7 Burkholderia ubonensis (059759890) 6 5 Burkholderia stabilis (GAU02319) Burkholderia cepacia (053077704) Pseudomonas mesoacidophila (084904304) 8 0 Burkholderia ubonensis (080408032) 8 5 Burkholderia ubonensis (KVP23108) Burkholderia pyrrocinia CH-67 (B392DRAFT_ALWI01000033_1.33, 2552801158) 9 4 Paraburkholderia nodosa (083245405) 9 5 Burkholderia nodosa DSM 21604 (A3CWDRAFT_scaffold_29.30, 2516023047) 9 8 Paraburkholderia mimosarum (051391183) 100 Burkholderia mimosarum NBRC 106338 (Ga0056710_1022, 2600793029) Burkholderia aspalathi LMG 27731 (Ga0075240_1003, 2671593425) 9 9 Paraburkholderia ginsengiterrae (OAJ53554) 100 Ferrovum sp.