Downloaded from orbit.dtu.dk on: Mar 29, 2019 Developing a CRISPR/CAS9-assisted recombineering system for natural soil pseudomonads Hansen, Morten Lindqvist; Jelsbak, Lars Published in: The Danish Microbiological Society Annual Congress 2018 - programme & abstracts Publication date: 2018 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Hansen, M. L., & Jelsbak, L. (2018). Developing a CRISPR/CAS9-assisted recombineering system for natural soil pseudomonads. In The Danish Microbiological Society Annual Congress 2018 - programme & abstracts (pp. 34-35). Copenhagen, Denmark: Danish Microbiological Society. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Programme & Abstracts ONLINE VERSION with poster abstracts The Danish Microbiological Society Annual Congress 2018 VE NI RS N A A R 12 NOVEMBER 2018 S Y EIGTVEDS PAKHUS R · A COPENHAGEN · DENMARK 1 9 E 5 Y 8 0 - 6 2 · 0 1 8 www.dmselskab.dk Index Programme . Flash poster presentations 47 About DMS 9 Speakers’ abstracts 11 Industry symposium 24 Poster sessions 24 Poster index 27 Poster abstracts Author index 31 81 Programme 09.00 Registration, poster mounting and coffee ROOM II (second floor) ROOM III (second floor) 10.00 Welcome and opening address by Welcome and opening address by DMS president Carsten Suhr Jacobsen DMS Vice President Trine Rolighed Thomsen 10. 15 [O1] When microbial conversations get [O2] Evolution and ecology of plague: a physical disease of today which changed our history Gemma Reguera, Michigan State University, Nils Christian Stenseth, Oslo University, USA Norway 10.45 Coffee and exhibition First & second floor ROOM II ROOM III ROOM IV BIOCONVERSION POLAR MICROBIOLOGY RESISTANT FUNGI Chair: Peter Ruhdal Jensen, Chair: Carsten Suhr Jacobsen Chair: Maiken Cavling Technical University of Aarhus University Arendrup, Dept. Clinical Denmark Microbiol. Rigshospitalet 11.00 Chair introduction Chair introduction Chair introduction 11.05 [O3] Valorisation of dairy side [O6] Shades of brown: how [O9] Azole Resistant A streams using bacterial cell ice algae is melting the fumigatus the global factories Greenland ice sheet perspective Christian Solem Alexandre Anesio Paul Verweij National Food Institute, Dept. of Environmental Center of Expertise in Technical University of Science, Aarhus University Mycology, Radboud Denmark University Nijmegen Medical Center, The Netherlands 11.30 [O4] Yeast cell factories for [O7] Antibiotic resistance [O10] Azole Resistant more sustainable pest control genes (ARGs) dissemination to Aspergillus in DK- in agriculture the Antarctic environments epidemiology and molecular Irina Borodina by anthropogenic activity perspectives Technical University of Woo Jun Sul Rasmus Krøger Hare Denmark Chung-Ang University, Statens Serum Institut South Korea 11.45 [O5] Heterologous [O8] Microbial responses [O11] Azole Resistant plant- production of secondary to warming and cooling of pathogenic fungi, why metabolites in filamentous Arctic soils should we worry? fungi Anders Priemé Lise Nistrup Jørgensen Uffe Hasbro Mortensen University of Copenhagen Dept. of Agroecology, Aarhus National Food Institute, University Technical University of Denmark 12.00 Flash poster presentations* Flash poster presentations* Flash poster presentations* 12.15 Lunch SALON C, ground floor 12.15 Exhibition First & second floor 12.15 General Assembly, Det Danske Pasteur Selskab ROOM IV 12.45 Poster Session (even numbers) First floor & ground floor 13.00- INDUSTRY SYMPOSIUM 13.25 Standardizing Microbiomics - Removing Bias in Collection, Purification and Analyses Nordic Biosite and Zymo Research 4 ROOM II ROOM III ROOM IV RHIZOSPHERE THE MICROBIOLOGY FOOD AND ENVIRON- MICROBIOLOGY OF CHRONIC WOUNDS MENTAL VIRUSES – FOR THE BENEFIT Chair: Klaus Kirketerp-Møller, Chair: Anna Charlotte OF PLANT GROWTH Bispebjerg Hospital Schultz, National Food Chair: Mette Nicolaisen, Institute, Technical University University of Copenhagen Sponsored by of Denmark 13.45 Chair introduction Chair introduction Chair introduction 13.50 [O12] Lotus japonicus and [O15] Clinical rationality and [O18] Hepatitis E virus in food rhizobia interactions; underlying structuring - detection methods and from simple to complex mental models infectivity determination associations Rune Nørager Reimar Johne Simona Radutoiu IT University of Denmark Bundesinstitut für Aarhus University & Designpsykologi Risikobewertung, Germany 14.15 [O13] Extending the [O16] The clinicians view [O19] Advances in rhizosphere microbiome Klaus Kirketerp-Møller, molecular detection of – bacterial communities Bispebjerg Hospital enteropathogenic viruses in associated with hyphae food of plant beneficial fungal Anna Charlotte Schultz biofertilizers National Food Institute, Ole Nybroe Technical University of University of Copenhagen Denmark 14.30 [O14] Future Cropping: [O17] The in vivo [O20] Association between Microbiomics Support transcriptome exposure to airborne Danish Field Trial with Blaine Fritz norovirus and gastroenteritis Microbial Fertilizers University of Copenhagen among wastewater workers Inês Marques Nunes Katrine Uhrbrand Novozymes National Research Centre for the Working Environment 14.45 Flash poster presentations* Flash poster presentations* Flash poster presentations* 15.00 Coffee and exhibition First floor & ground floor 15.15 Poster Session (uneven numbers) First floor 16.15 Pasteur travel grant ceremony ROOM III 16.30 [O21] Keynote by Jan Sørensen & Søren Molin ROOM III Danish microbiology history 17.30 Reception with fermented beverage SALON C, ground floor 19.00 Optional congress dinner Spiseloppen, Christiania *) Please see next page for information about the flash poster presentations 5 6 Flash poster presentations PARALLEL SESSIONS, MORNING ROOM II Second floor ROOM III Second floor ROOM IV Second floor Bioconversion Polar microbiology Resistant fungi 12.00 [P08] Optimising acetate [P12] Searching for novel [P32] Microbial biodiversity production from H2 photosynthetic bacteria in of sedimented dust from six and CO2 in a tricle-bed the high arctic pig farms bioreactor Yonghui Zeng John Kerr White Morten Kok Lund Aarhus University Det Nationale Aarhus University Forskningscenter for Arbejdsmiljø 12.05 [P10] Construction of [P60] Turnover of soil [P35] Unlocking the various microbial consortia bacteria rRNA at different historical and biological for biodegradation based on temperatures diversity with (fungi; novel dilution to extinction basidiomycota) from Morten Schostag cultures herbarium collections University of Copenhagen Dingrong Kang Benjamin Conlon University of Copenhagen University of Copenhagen 12.10 [P04] Producing PHBs from [P43] Uncovering the hidden [P36] Can interaction renewable sources: using diversity of the Asgard specificity in the fungus- excess electricity to produce Archaea farming termite symbiosis bioplastics from CO2 be explained by nutritional Jakob Brandt requirements of the fungal Daniel Jensen Aalborg University crop? Aarhus University Rafael Rodrigues da Costa University of Copenhagen PARALLEL SESSIONS, AFTERNOON Rhizosphere microbiology The microbiology of Food and environmental – for the benefit of plant Chronic wounds viruses growth 14.45 [P03] From soil to plant [P11] The confirmation of [P23] Quorum sensing protection: exploiting fibronectin determines suc- affects prophage induction secondary metabolities of cess of bacterial attachment and biofilm formation in v bacillus subtilis anguillarum Nasar Khan Heiko Thomas Kiesewalter Aarhus University Mads Frederik Hansen DTU Bioengineering University of Copenhagen 14.50 [P01] Attachment of Bacillus [P13] Smartdiagnos: Sample [P25] A myriad of new subtilis cells to the hyphae concentration integrated bacteriophage genera and of Aspergillus niger depends solid-phase PCR for next- spcies with potential use on the biofilm fibre-protein generation of pathogen in phage therapy against detection bacterial plant pathogens Bodil Kjeldgaard Technical University of Tien Anh Ngo Alexander Byth Carstens Denmark Technical University of Aarhus University Denmark 14.55 [P07] Mining the [P17] Pro-diag: Improved [P27] Detection of hepatitis rhizosphere of Christmas diagnosis of chronic A virus by direct extraction trees (Abies nordmanniana) prosthetic joint infection of viral RNA from dates for plant growth promoting implicated in a disease Xiaofeng Chen bacteria outbreak in Denmark Aalborg University Adriana Garcia Sheikh Md Rajiuddin University of Copenhagen Technical University of Denmark 7 Copenhagen Biotech Supply We represent PCR Biosystems, a manufacturer of high quality kits and reagents for PCR and related technology. Our products cover a broad range of applications with focus on yield, specificity, sensitivity and speed - in the simplest and most challenging of