<p>Table S4. Primers and probes used for TaqMan qPCR.</p><p> clfA - F CAAAGGTGATTTAGCTTTACGTTCAACTT clfA - R TGCTACTTCGTTGTCCCATGAC clfA - Probe TAGAGCGCCAAATTAT clfB - F AATGTGTTACCACTTTGATTAGGGTCAA clfB - R GCTGCTGATGCTAAAGGTACAAATG clfB - Probe ACGGCAAGTAATTTC sdrC - F TCAGTTCACTGGTTTAAGCAATGGA sdrC - R CATTTGCAGTTGTCGGTGTATAACC sdrC - Probe CTGGTGTTGAAAACTC icaB – F CAAATGCAGATGACGATTCACCTAA icaB – R AATTCGCTTTTCTTACACGGTGATAATTT icaB - Probe CCAGAGCACTATTTTC sasA – F GGCTTGTTGACTGACTTGTATATGATGA sasA – R CAAAGTGCCTCAAACTCAACAAGTA sasA - Probe AAGCACGAGCGAATCC sasF – F CTCGTCTTTATTAAATATACTTTCTAAAATGCTTTGTGTA sasF – R CGAAAGAGCGTATAAAAAGTCAACGAA sasF - Probe ACGTGCAAGTTCTTCC fnbA – F AACCATTATCCCAAGTTAAGGTATATCCTCT fnbA – R TGGTACTGATGAAGTTGATTTTAGAACACA fnbA - Probe CATCCAGAGCAACTTT tarK – F ACTACATATTAAAAGAAGCAAAACAATATTATTCACATCAG tarK –R GGCGTAGTAACTCATCATATACATACTTGAA tarK - Probe TCGCGTCCGAATTTA tagO – F TGATTTGGATTGTTGCTATTACAAATGCA tagO – R GTAATGAGTCCGATTGCAGAAACAC tagO - Probe CCGACGCCAAACCAT efb –F GAATATGGTGCACGTCCACAATT efb – R AAGATTTTGAGCTTGAATCAATTTTTGTTCTTTTT efb – Probe TCGCTGCTGGTTTATT ebpS- F CTTATCTTGAGACGCTTTATCCTCAGT ebpS – R AGAAACATTCAAATGACGCTCAAAACA ebpS - Probe CAAGGCGAATAACTCG sdrD – F GAAGATGGGTCATACTTGATTCCAAACT sdrD – R CCGTTTGAATCTAATTCTTCGTTATTACCTT sdrD – Probe CCGTGTAGAATTTTC sasG – F GTCCATGGAACTTGTATAAATGTATCCAGT sasG – R GCAGAAGAATATTTAACTAATGGTGGAATCCT sasG - Probe AAGGTCTGGTAAATTC isdH – F GCATTGTAAACTGCTTTGTCAGGTA isdH – R CGTGTCACTACTGTTTCTAAAGATCCT isdH – Probe AACGCTGATTTTCCC isdB – F CTTTTTTATATGGCGCTAATAATTTTTCAGCTT isdB – R CACATTAATGGAATTCGCACAACCA isdB – Probe CAGTGCAGATAAATTC mntC – F AGGTTTAACATCTTTTGATACTGCGATAACT mntC – R AGACTGGTAACGGTTGGTTTGAAAA mntC - Probe ACAGGCTGGTAAATCA isdA – F TGCTTTTTCAAATTCCAAATGCGTAGT isdA - R GCAGTTGAACCTGGATATAAGAGCTTA isdA – Probe TCGTGCCACAAATTAA fhuD – F CCCAAACATCACGGTCAACAAT fhuD – R AGAAGTTACAAGAAGATGCAACATGGA fhuD - Probe TCCACGCGATTATTTT sstD – F CAAACGTTGGTAATTTAAAAGAAGTGAATTTTGA sstD – R CTTTTGATTAGCTGTACGTCCAGAGA sstD – Probe TTGCTGCGACGAAACC hla – F GTGTATGACCAATCGAAACATTTGCA hla – R GGTAATGTTACTGGTGATGATACAGGAA hla - Probe TTGGCGGCCTTATTG spA – F CATTTTGTTGTTCTTTGTTGAATTTGTTGTC spA – R CAAGCCAAAGCGCTAACCTTTTAG spA – Probe TCAAGCACCAAAAGCT Sbi – F CGTGATAAAAACAACCGCTTTGTAGAA Sbi – R CGTTGTGCTAAACGTCTGTTTTCAA Sbi – Probe ATGAGCGTGTGAAATC pvlF – F CCATATGGTCCCCAACCATTATTCA pvlF – R AAAGCTATAGAACTAGCTTAGATAAAAGAACTAATTTCAA pvlF - Probe CATCCCAACCAATTTT 16s – F GGTCTGTAACTGACGCTGATGTG 16s – R GTGGACTACCAGGGTATCTAATCCT 16s – Probe TCCCCACGCTTTCG pcrV – F CGCGGAGTTGAAGGTCTACAG pcrV – R CGATCCTGATGCCCTGCTT pcrV – Probe TCCAGTCGCAGATCAA</p>