Table 1. Comparative Analysis of Bce ATCC 14579 and Ban A2012 Based on the Metabolic

Table 1. Comparative analysis of Bce ATCC 14579 and Ban A2012 based on the metabolic reconstruction. @ Carbohydrate_metabolism@ Carbohydrate_assimilation@ Polysaccharide_degradation@ Pullulan_degradation* Pullulan_degradation_by_pullulanase. 3.2.1.41 - PullulanaseBC2734, BA_3251 95% identicalBC4699, BA_5371 92% identical@ Chitin_and_chitosan_degradation* Chitosan_degradation. Chitosanase (EC 3.2.1.132)BC2682, BA_3190 96% identical* Chitin_degradation. Endochitinase (EC 3.2.1.14)BC0429, BA_0961 94% identical. Exochitinase (EC 3.2.1.14)BC3725, BA_4327 94% identical@ Degradation_of_inulin_and_levan* Inulin_oligomer_degradation_by_beta-fructosidase. 3.2.1.26 - Beta-fructofuranosidaseBC0774, BA_1337 89% identical@ Glycogen_and_starch_degradation* Amylose_hydrolysis_via_cyclomaltodextrin. 3.2.1.54 - CyclomaltodextrinaseBC4014, BA_4691 93% identical * Amylose_hydrolysis_by_maltogenic_alpha-amylase. 3.2.1.133 - Glucan 1,4-alpha-maltohydrolaseBC4014, BA_4691 93% identical* Amylose_hydrolysis_by_maltohexaosidase. 3.2.1.98 - Glucan 1,4-alpha-maltohexaosidaseBC3482, BA_4041 95% identical* Amylose_hydrolysis_by_alpha-glucosidase. 3.2.1.20 - Alpha-glucosidaseBC0413, BA_0945 95% identical* Amylose_hydrolysis_by_alpha-amylase. 3.2.1.1 - Alpha-amylaseBC1157, BA_1706 88% identical* Amylose_phosphorolysis. 2.4.1.1 - PhosphorylaseBC4863, BA_5537 95% identical* Glycogen_and_amylopectin_hydrolysis_to_limit_dextrin_by_alpha-amylase. 3.2.1.1 - Alpha-amylaseBC1157, BA_1706 88% identical* Glycogen_and_amylopectin_phosphorolysis_to_limit_dextrin. 2.4.1.1 - PhosphorylaseBC4863, BA_5537 95% identical@ Assimilation_of_oligosaccharides_and_disaccharides@ Sucrose_degradation* Sucrose_hydrolysis. 3.2.1.26 - Beta-fructofuranosidaseBC0774, BA_1337 89% identical or . 3.2.1.48 - Sucrose Alpha-glucosidase * Sucrose-6-phosphate_hydrolysis. 3.2.1.26 - Beta-fructofuranosidaseBC0774, BA_1337 89% identical@ Degradation_of_alpha-D-glucosyl-D-fructoses* Palatinose_hydrolysis. 3.2.1.10 - Oligosaccharide Alpha-1,6-glucosidaseBC4015, BA_4692 95% identical@ Raffinose_degradation* Raffinose_degradation_via_beta-fructofuranosidase. 3.2.1.26 - Beta-fructofuranosidaseBC0774, BA_1337 89% identical@ Cellobiose_degradation* Cellobiose_6-phosphate_hydrolysis_via_6-phospho-beta-glucosidase. 3.2.1.86 - 6-phospho-beta-glucosidaseBC5209, BA_0294 99% identicalBC3760@ Panose_and_isopanose_degradation* Panose_hydrolysis_to_glucose_and_maltose. 3.2.1.70 - Glucan 1,6-alpha-glucosidase or . 3.2.1.10 - Oligosaccharide Alpha-1,6-glucosidaseBC4015, BA_4692 95% identical@ Isomaltose_degradation* Isomaltose_hydrolysis. 3.2.1.10 - Oligosaccharide Alpha-1,6-glucosidaseBC4015, BA_4692 95% identical@ Maltose_degradation* Maltose_acetylation . 2.3.1.79 - Maltose O-acetyltransferaseBC4658, BA_3901 66% identical* Maltose_hydrolysis. 3.2.1.20 - Alpha-glucosidaseBC0413, BA_0945 95% identical or . 3.2.1.48 - Sucrose Alpha-glucosidase@ Trehalose_degradation* Trehalose_6-phosphate_hydrolysis. 3.2.1.93 - Alpha,alpha-phosphotrehalaseBC0632, BA_1215 95% identical or . 3.2.1.122 - Maltose-6'-phosphate Glucosidase@ Diacetylchitobiose_and_chitobiose_degradation* Diacetylchitobiose_uptake_PTS_system. PTS system, diacetylchitobiose-specific IIA component (EC 2.7.1.69)BC0807, BA_1377 92% identical. PTS system, diacetylchitobiose-specific IIB component (EC 2.7.1.69)BC2393, BA_2957 95% identicalBC0808, BA_1378 94% identical* Chitobiose-6-phosphate_hydrolysis. 3.2.1.86 - 6-phospho-beta-glucosidaseBC5209, BA_0294 99% identicalBC3760 @ Glucose_and_gluconate_metabolism@ Glucose_phosphorylation* Glucose_phosphorylation_by_glucokinase. 2.7.1.2 - GlucokinaseBC4260, BA_4934 98% identical * Alpha-phosphoglucomutase_reaction. 5.4.2.2 - PhosphoglucomutaseBC4919, BA_0026 97% identical* Glucose-6-phosphate_oxidation_to_6-phosphogluconate. 1.1.1.49 - Glucose-6-phosphate 1-dehydrogenaseBC3375, BA_3931 97% identicalBC3376, BA_3932 92% identical. 3.1.1.31 - 6-phosphogluconolactonase, putativeBC3368, BA_3925 91% identical* D-gluconate_phosphorylation. 2.7.1.12 - GluconokinaseBC3369, BA_3926 97% identicalBC2223BA_0743, BA_0744 * D-glucose_oxidation_by_glucose_1-dehydrogenase. 1.1.1.47 - Glucose 1-dehydrogenaseBC4715, BA_5386 97% identical. 3.1.1.17 - Gluconolactonase@ D-fructose_metabolism* Fructose_phosphorylation_by_fructokinase. 2.7.1.4 - FructokinaseBC0773, BA_1336 88% identical* D-fructose-1-phosphate_phosphorylation. 2.7.1.56 - 1-phosphofructokinaseBC3719, BA_4320 90% identical@ Metabolism_of_D-ribose,_2-deoxy-D-ribose_and_ribitol* Deoxyribose-phosphate_aldolase . 4.1.2.4 - Deoxyribose-phosphate AldolaseBC1820, BA_2394 78% identical* Phosphopentomutase_reaction_(deoxyribose). 5.4.2.7 - PhosphopentomutaseBC4087, BA_4767 98% identical* 2-deoxy-D-ribose_phosphorylation_via_ribokinase. 2.7.1.15 - RibokinaseBC0660, BA_1253 95% identical* Ribokinase. 2.7.1.15 - RibokinaseBC0660, BA_1253 95% identical@ Aminosugar_degradation@ N-acetylglucosamine_metabolism* N-acetylglucosamine_phosphorylation_by N-acetylglucosamine_kinase. 2.7.1.59 - N-acetylglucosamine KinaseBC2397, BA_2961 79% identical* N-acetylglucosamine_6-phosphate_deacetylation. 3.5.1.25 - N-acetylglucosamine-6-phosphate DeacetylaseBC4055, BA_4734 97% identical* D-glucosamine_6-phosphate_degradation. 3.5.99.6 - Glucosamine-6-phosphate DeaminaseBC4054, BA_4733 98% identical@ Uronic_acid_metabolism* 2-dehydro-3-deoxy-D-gluconate_degradation. 2.7.1.45 - 2-dehydro-3-deoxygluconokinaseBC4843, BA_5516 95% identical. 4.1.2.14 - 2-dehydro-3-deoxyphosphogluconate Aldolase BC4844, BA_5517 98% identical@ Polyol_metabolism@ Glycerol_and_dihydroxyacetone_metabolism* Dihydroxyacetone_kinase. 2.7.1.29 - Glycerone KinaseBC0981, BA_1540 97% identicalBC0979, BA_1538 94% identical* Glycerol-3-phosphate_oxidation_to_glycerone-3-phosphate_(NAD(P)). 1.1.1.94 - Glycerol-3-phosphate Dehydrogenase (nad(p)+)BC1505, BA_2046 96% identical. 1.1.1.8 - Glycerol-3-phosphate Dehydrogenase (nad+)* Glycerol-3-phosphate_oxidation_to_glycerone-3-phosphate_(FAD). 1.1.99.5 - Glycerol-3-phosphate DehydrogenaseBC1036, BA_1587 97% identical* Glycerol_catabolism_via_EC_2.7.1.30. 2.7.1.30 - Glycerol KinaseBC1035, BA_1586 98% identical@ Myo-inositol_metabolism* D-inositol_1-phosphate_catabolism. 3.1.3.25 - Myo-inositol-1(or 4)-monophosphataseBC3958, BA_4639 94% identical* Myo-inositol_degradation. 1.1.1.18 - Myo-inositol 2-dehydrogenaseBA_3002. IolD proteinBA_3005. IolB protein BA_3009. IolE proteinBA_3007BA_3005. IolH protein. IolI protein. 2.7.1.92 - 5-dehydro-2-deoxygluconokinaseBA_3003. 4.1.2.29 - 5-dehydro-2-deoxyphosphogluconate AldolaseBA_3008. 1.2.1.18 - Malonate-semialdehyde Dehydrogenase (acetylating)BA_3004@ Metabolism_of_alcohols,_aldehydes_and_ketones@ Ethanol_and_acetaldehyde_metabolism* Ethanol_oxidation_by_alcohol_dehydrogenase. 1.1.1.1 - Alcohol DehydrogenaseBC2660, BA_3165 89% identicalBC2220, BA_2770 97% identicalBC0802, BA_1368 92% identicalBC4365, BA_5039 96% identical* Acetaldehyde_oxidation. 1.2.1.3 - Aldehyde Dehydrogenase (nad+)BC3555, BA_4101 98% identicalBC2832, BA_3352 95% identical or . 1.2.1.4 - Aldehyde Dehydrogenase (nadp+)* Acetaldehyde_oxidation_(CoA-acetylating). 1.2.1.10 - Acetaldehyde Dehydrogenase (acetylating) BC4365, BA_5039 96% identical@ Methanol_and_formaldehyde_metabolism* Methanol_oxidation_via_alcohol_dehydrogenase. 1.1.1.1 - Alcohol DehydrogenaseBC2660, BA_3165 89% identicalBC2220, BA_2770 97% identicalBC0802, BA_1368 92% identicalBC4365, BA_5039 96% identical* Formate_biosynthesis. 1.2.1.1 - Formaldehyde Dehydrogenase (glutathione)BC3092, BA_3633 98% identical. 3.1.2.12 - S-formylglutathione Hydrolase@ Metabolism_of_butane-2,3-diol_and_acetoin* Acetoin_dehydrogenase_accessory_proteins. Acetoin utilization protein acuA (EC 2.3.1.-)BC4660, BA_5335 98% identical. Acetoin utilization acuB proteinBC4661, BA_5336 98% identical. Acetoin utilization acuC proteinBC4662, BA_5337 97% identical* (R,R)-butanediol_oxidation_to_acetoin. 1.1.1.4 - (r,r)-butanediol DehydrogenaseBC0668, BA_1262 98% identical* Acetoin_degradation_to_acetyl-CoA. 1.2.4.- - Acetoin dehydrogenase E1 component alpha-subunitBC2779, BA_3300 98% identical. 1.2.4.- - Acetoin dehydrogenase E1 component beta-subunit BC2778, BA_3299 98% identical. 2.3.1.- - Dihydrolipoamide acetyltransferase component of acetoin dehydrogenase complexBC2777, BA_3298 89% identical. 1.8.1.4 - Dihydrolipoamide DehydrogenaseBC2776, BA_3297 89% identical@ Metabolism_of_carboxylic_acids@ Butyrate_metabolism* Butanoyl-CoA_biosynthesis_via_butanoyl_phosphate. 2.7.2.14 - Branched-chain-fatty-acid KinaseBC4161, BA_4841 97% identical or . 2.7.2.7 - Butyrate Kinase. 2.3.1.19 - Phosphate ButyryltransferaseBC4163, BA_4843 96% identical* Butanoyl-CoA oxidation_via_butyryl-CoA_dehydrogenase. 1.3.99.2 - Butyryl-CoA DehydrogenaseBC3074, BA_3608 95% identicalBC5342, BA_0443 97% identicalBC5341, BA_0442 97% identical* Crotonoyl-CoA--acetyl-CoA_metabolism. 4.2.1.55 - 3-hydroxybutyryl-coa DehydrataseBC0898, BA_1476 98% identical. 1.1.1.157 - 3-hydroxybutyryl-coa DehydrogenaseBC5343, BA_0444 98% identical. 2.3.1.9 - Acetyl-coa AcetyltransferaseBC5344, BA_0445 99% identical@ Propionate_metabolism * Propanoyl-CoA_biosynthesis_via_acetate-CoA_ligase. 6.2.1.1 - Acetate--coa LigaseBC4659, BA_5334 98% identicalBC4645, BA_5317 97% identicalBC2489, BA_3055 97% identical* Methylcitrate_pathway. 4.1.3.31 - 2-methylcitrate SynthaseBC2285, BA_2844 99% identical. 4.2.1.79 - 2-methylcitrate DehydrataseBC2286, BA_2845 99% identical. 4.2.1.99 - 2-methylisocitrate DehydrataseBC2286, BA_2845 99% identical. 4.1.3.30 - Methylisocitrate LyaseBC2287, RBAT10010 94% identical * (S)-methylmalonyl-CoA_biosynthesis_via_propionyl-CoA_carboxylase. 6.4.1.3 - Propionyl-coa CarboxylaseBC2484, BA_3050 97% identicalBC2488, BA_3054 98% identical* Methylmalonyl-CoA_epimerase. 5.1.99.1 - Methylmalonyl-coa EpimeraseBC1837, BA_2415 97% identical@ D-lactate_and_L-lactate_metabolism* L-lactate_dehydrogenase. 1.1.1.27 - L-lactate DeydrogenaseBC4996, BA_0106 99% identicalBC1924, BA_2427 99% identicalBC1519 * D-lactate_oxidation_by_(S)-hydroxy-acid_oxidase. 1.1.3.15 - (s)-2-hydroxy-acid OxidaseBC1296, BA_1834 96% identicalBC1297, BA_1835 97% identicalBC1303, BA_1841 98% identicalBC3504, BA_4067 93% identical@ Glycolate_oxidation* Glyoxylate_reductase. 1.1.1.79 - Glyoxylate Reductase (nadp+)BC1415, BA_1955 95% identical. 1.1.1.26 - Glycolate ReductaseBC1415, BA_1955 95% identical* Glyoxylate_oxidation_by_(S)-hydroxy-acid_oxidase. 1.1.3.15 - (s)-2-hydroxy-acid OxidaseBC1296, BA_1834 96% identicalBC1297, BA_1835 97% identicalBC1303, BA_1841 98% identicalBC3504, BA_4067 93% identical@ Acetate_assimilation* Acetyl-CoA_biosynthesis_via_acetate--CoA_ligase. 6.2.1.1 - Acetate--coa LigaseBC4659, BA_5334 98% identicalBC4645, BA_5317 97% identicalBC2489, BA_3055 97% identical* Acetyl-CoA_catabolism_via_acetyl_phosphate. 2.7.2.1 - Acetate KinaseBC4637, BA_5309 98% identical . 2.3.1.8 - Phosphate AcetyltransferaseBC5387, BA_0493 99% identical* 3-phosphoglycerate_anabolism. 2.7.1.31 - Glycerate KinaseBC0184, BA_0734 84% identical* Oxalate_decarboxylation. 4.1.1.2 - Oxalate DecarboxylaseBC2383, BA_2948 87% identicalBC1031BA_2254@ Carbohydrate_membrane_transport* PTS_system_general_components. 2.7.3.9 - Phosphoenolpyruvate--protein PhosphataseBC4048, BA_4726 98% identical. Phosphocarrier protein HPrBC4049, BA_4727 100% identical@ Oligosaccharides_membrane_transport* Beta-cyclodextrin_uptake_via_cyclodextrin_ABC_transporter* Alpha-cyclodextrin_uptake_via_cyclodextrin_ABC_transporter* Linear_maltodextrin_uptake_via_cyclodextrin_ABC_transporter* Gamma-cyclodextrin_uptake_via_cyclodextrin_ABC_transporter. Cyclodextrin-binding proteinBC4013, BA_4690 95% identical. Cyclodextrin transport system permease proteinBC4012, BA_4689 98% identicalBC4011, BA_4688 100% identical* Lichenan_oligosaccharide_uptake_lic_PTS_system . PTS system, lichenan oligosaccharide-specific IIA component (EC 2.7.1.69)BC5215, BA_0300 98% identicalBC5210, BA_0295 98% identical. PTS system, lichenan oligosaccharide-specific IIB component (EC 2.7.1.69)BC5217, BA_0302 97% identical. PTS system, lichenan oligosaccharide-specific IIC componentBC5211, BA_0296 99% identical@ Monosaccharide_membrane_transport@ Glucose_membrane_transport* Glucose_uptake_glcBC_PTS_forming_glucose-6-phosphate. PTS system, glucose-specific IIA component (EC 2.7.1.69)BC5320, BA_0418 99% identical. PTS system, glucose-specific IIBC component (EC 2.7.1.69)* D-glucose_uptake_glucose_transporter_glcU. Glucose uptake proteinBC4716, BA_5387 97% identicalBC0219, BA_0780 99% identical@ D-fructose_membrane_transport* D-fructose_uptake_FruABC_PTS_system. PTS system, fructose-specific IIABC component (EC 2.7.1.69)BC3718, BA_4319 94% identical@ N-acetylglucosamine_membrane_transport* N-acetylglucosamine_uptake_nag_PTS_forming_GlcNAc-6-phosphate. PTS system, N-acetylglucosamine-specific IIABC component (EC 2.7.1.69)BC0482, BA_1071 88% identical@ Ribose_membrane_transport* D-ribose_uptake_ribose_ABC_transporter . D-ribose-binding proteinBC0664, BA_1257 97% identical. Ribose transport system permease protein rbsCBC2961, BA_3482 95% identicalBC0663, BA_1256 98% identical. Ribose transport ATP-binding protein rbsABC2963, BA_3484 94% identical. High affinity ribose transport protein rbsDBC0661, BA_1254 96% identical@ Carbohydrate_efflux* Formate_channel. Formate TransporterBC3727, BA_4331 93% identicalBC3568, BA_4115 94% identical@ Aldonic_Uronic_acids_membrane_transport* D-gluconate_uptake_proton_symport_gluconate_permease. Gluconate permeaseBC4841, BA_5514 98% identicalBC3370, BA_3927 98% identical@ Disaccharides_membrane_transport* Diacetylchitobiose_uptake_PTS_system. PTS system, diacetylchitobiose-specific IIA component (EC 2.7.1.69)BC0807, BA_1377 92% identical. PTS system, diacetylchitobiose-specific IIB component (EC 2.7.1.69)BC2393, BA_2957 95% identicalBC0808, BA_1378 94% identical. PTS system, diacetylchitobiose-specific IIC component @ Trehalose_membrane_transport* Trehalose_uptake_glv_PTS_forming_trehalose-6-phosphate. PTS system, glucose-specific IIA component (EC 2.7.1.69)BC5320, BA_0418 99% identical. PTS system, maltose-specific IIBC component (EC 2.7.1.69)* Trehalose_uptake,_PTS_system. PTS system, glucose-specific IIA component (EC 2.7.1.69)BC5320, BA_0418 99% identical. PTS system, trehalose-specific IIBC component (EC 2.7.1.69)BC0631, BA_1214 98% identical@ Sucrose_membrane_transport* Sucrose_uptake,_PTS_system. PTS system, glucose-specific IIA component (EC 2.7.1.69)BC5320, BA_0418 99% identical. PTS system, sucrose-specific IIBC component (EC 2.7.1.69)BC0842, BA_1410 96% identical@ Cellobiose_membrane_transport* Cellobiose_uptake_lic_PTS_forming_cellobiose-6-phosphate. PTS system, lichenan oligosaccharide-specific IIA component (EC 2.7.1.69)BC5215, BA_0300 98% identicalBC5210, BA_0295 98% identical. PTS system, lichenan oligosaccharide-specific IIB component (EC 2.7.1.69)BC5217, BA_0302 97% identical. PTS system, lichenan oligosaccharide-specific IIC componentBC5211, BA_0296 99% identical@ Salicin_membrane_transport* Salicin_uptake_lic_PTS_forming_salicin-6-phosphate . PTS system, lichenan oligosaccharide-specific IIA component (EC 2.7.1.69)BC5215, BA_0300 98% identicalBC5210, BA_0295 98% identical. PTS system, lichenan oligosaccharide-specific IIB component (EC 2.7.1.69)BC5217, BA_0302 97% identical. PTS system, lichenan oligosaccharide-specific IIC componentBC5211, BA_0296 99% identical@ Arbutin_membrane_transport* Arbutin_uptake_lic_PTS_forming_arbutin-6-phosphate. PTS system, lichenan oligosaccharide-specific IIA component (EC 2.7.1.69)BC5215, BA_0300 98% identicalBC5210, BA_0295 98% identical. PTS system, lichenan oligosaccharide-specific IIB component (EC 2.7.1.69)BC5217, BA_0302 97% identical. PTS system, lichenan oligosaccharide-specific IIC componentBC5211, BA_0296 99% identical@ Polyols_membrane_transport@ Glycerol_3-phosphate_membrane_transport* Glycerol-3-phosphate_uptake_ABC_transporter. Glycerol-3-phosphate-binding proteinBC0570, BA_1149 84% identical. SN-glycerol-3-phosphate transport system permease protein ugpABC0568, BA_1145 73% identical. SN-glycerol-3-phosphate transport system permease protein ugpEBC0569, BA_1147 98% identical. SN-glycerol-3-phosphate transport ATP-binding protein ugpC* Glycerol-3-P_phosphate_antiport_glpT . Glycerol-3-phosphate transporterBC0656, BA_1247 98% identical* Glycerol_uptake_channel. Glycerol uptake facilitator proteinBC1034, BA_1585 86% identical@ Carboxylic_acids_membrane_transport* Anaerobic_fumarate_uptake_succinate_antiport. Anaerobic C4-dicarboxylate transporterBC0421, BA_0954 99% identical* Anaerobic_fumarate_uptake_proton_symport. Anaerobic C4-dicarboxylate transporterBC0421, BA_0954 99% identical@ Citrate_membrane_transport* Citrate_uptake_proton_symport. Citrate-proton symporterBC0562, BA_1139 94% identicalBC0935, BA_1501 98% identical* L-lactate_uptake_proton_symport_L-lactate_permease* Glycolate_uptake_proton_symport_L-lactate_permease* D-lactate_uptake_proton_symport_L-lactate_permease. L-lactate permeaseBC0612, BA_1194 91% identicalBC1240, BA_1789 96% identical@ Bacterial_Protein_Metabolism@ Bacterial_Protein_Degradation@ Bacterial_metallopeptidases * Bacterial_metallopeptidases. 3.4.24.3 - Microbial CollagenaseBC4377, BA_5051 95% identicalBC3529, BA_4075 94% identicalBC0556, BA_1129 93% identicalBC3762, BA_4363 90% identicalBC3161, BA_3802 92% identicalBC3412BC2466BC3009BC3010. 3.4.24.28 - BacillolysinBC2735, BA_3252 95% identicalBC0602, BA_1181 95% identicalBC5036, BA_0144 94% identicalBC3383, BA_3938 94% identicalBC5351BC2167, BA_2678 93% identicalBC2506, BA_3074 82% identical. 3.4.24.57 - O-sialoglycoprotein EndopeptidaseBC0289, BA_0832 97% identical. Immune inhibitor A precursor (ec 3.4.24.-)BC1284, BA_1822 96% identicalBC0666, BA_1259 96% identicalBC2984. Membrane metalloproteaseBC5377, BA_0481 91% identical BC1446, BA_1986 84% identicalBC3818, BA_4428 94% identical. Oligoendopeptidase F (ec 3.4.24.-)BC5453, BA_0564 91% identicalBC1338, BA_1880 90% identicalBC1193, BA_1742 97% identicalBC2870, BA_3391 85% identicalBC2524, BA_3093 95% identicalBC3484, BA_4043 92% identicalBA_3346. Zinc metalloprotease (ec 3.4.24.-)BC0369, BA_0908 95% identicalBC1123, BA_1672 94% identicalBC0268, BA_0826 85% identical. Zinc Protease (ec 3.4.99.-)BC3803, BA_4413 98% identicalBC3786, BA_4393 95% identicalBC3787, BA_4394 98% identical. Cell envelope-bound metalloprotease (camelysin) (ec 3.4.24.-)BC1281, BA_1819 94% identicalBC4868@ Bacterial_Serine_proteases* Bacterial_serine_proteases. 3.4.21.19 - Glutamyl EndopeptidaseBC0789. 3.4.21.26 - Prolyl OligopeptidaseBC2927, BA_4352 78% identical . 3.4.21.53 - Endopeptidase LaBC3926, BA_4603 92% identicalBC4478, BA_5142 98% identicalBC4477, BA_5141 98% identical. 3.4.21.66 - ThermitaseBC2316, BA_2875 96% identicalBC3240. 3.4.21.89 - Signal Peptidase IBC1136, BA_1687 93% identicalBC3060, BA_3591 89% identicalBC3837, BA_4447 68% identicalBC3070, BA_3602 97% identicalBC0456, BA_0989 90% identicalBC1278, BA_1816 94% identicalBC2621. 3.4.21.92 - Endopeptidase ClpBC2793, BA_3310 96% identicalBC5152, BA_0238 99% identicalBA_4564. ATP-dependent protease hslV (ec 3.4.25.-)BC3828, BA_4438 100% identical. ATP-dependent hsl protease ATP-binding subunit hslUBC3827, BA_4437 98% identical. Minor extracellular protease VPR precursor (ec 3.4.21.-)BC4351, BA_5024 92% identicalBC4869. Protease Do (ec 3.4.21.-) BC5458, BA_0568 95% identical. Serine Protease (ec 3.4.21.-)BC0759, BA_1330 98% identicalBC3927, BA_4604 96% identicalBC2704, BA_3217 91% identical. Protease Hhoa (ec 3.4.21.-)BC3600, BA_4148 97% identical@ Bacterial_Exopeptidases@ Bacterial_Omega_peptidases* Bacterial_omega_peptidases. 3.4.19.1 - Acylaminoacyl-peptidaseBC0192, BA_0747 85% identical. 3.4.19.3 - Pyroglutamyl-peptidase IBC3063, BA_3595 94% identical@ Bacterial_Carboxy_peptidases* Bacterial_carboxy_peptidases. 3.4.13.3 - Xaa-his DipeptidaseBC2439, BA_2989 94% identicalBC4702, BA_5374 94% identical. 3.4.13.9 - Xaa-pro DipeptidaseBC4614, BA_5282 99% identicalBC4198, BA_4875 98% identicalBC5199, BA_0284 96% identicalBC3875, BA_4485 90% identical. 3.4.13.19 - Membrane DipeptidaseBC3775, BA_4381 92% identical. 3.4.17.19 - Thermostable Carboxypeptidase 1 BC1566, BA_2104 97% identical@ Bacterial_Amino_peptidases* Bacterial_amino_peptidases. 3.4.11.1 - Leucyl AminopeptidaseBC4921, BA_0028 96% identical. 3.4.11.5 - Prolyl AminopeptidaseBC2171, BA_2719 93% identicalBC4663BC2337BA_3206. 3.4.11.9 - Xaa-pro AminopeptidaseBC1828, BA_2405 91% identical. 3.4.11.18 - Methionyl AminopeptidaseBC5356, BA_0458 98% identicalBC0153, BA_0715 100% identicalBC1568, BA_2107 89% identical. 3.4.14.11 - Xaa-pro Dipeptidyl-peptidaseBC2861, BA_3381 87% identical. Aminopeptidase (EC 3.4.11.-)BC4678, BA_5352 98% identicalBC0360, BA_0899 96% identicalBC1812. Aminopeptidase Y (EC 3.4.11.-)BC5359, BA_0463 93% identical. Deblocking aminopeptidase (EC 3.4.11.-)BC0901, BA_1479 97% identicalBC4693, BA_5365 98% identical BC4571, BA_5240 98% identical. Peptidase T (EC 3.4.11.-)BC3743, BA_4347 95% identicalBC4143, BA_4824 98% identical@ Amino_acid_membrane_transport@ Gln_Asn_uptake* L-glutamine_uptake_Gln_ABC_transporter. Glutamine-binding proteinBC0640, BA_1224 98% identical. Glutamine transport system permease protein glnPBC0642, BA_1226 96% identical. Glutamine transport ATP-binding protein glnQBC0639, BA_1223 95% identical@ Ser_Thr_uptake* Serine_uptake_proton_symport_sdaC. Serine transporterBC3398, BA_3947 99% identicalBC3189, BA_3808 92% identical* L-threonine_uptake_LIVTA_ABC_transporter. Leucine-, isoleucine-, valine-, threonine-, and alanine-binding proteinBC1927, BA_2434 96% identical. Branched-chain amino acid transport system permease protein livHBC1930, BA_2437 97% identical. Branched-chain amino acid transport system permease protein livMBC1931, BA_2438 97% identical. Branched-chain amino acid transport ATP-binding protein livGBC1928, BA_2435 95% identical . Branched-chain amino acid transport ATP-binding protein livFBC1929, BA_2436 92% identical@ Cys_Met_uptake* Cystine_uptake_cystine_ABC_transporter. Cystine-binding proteinBC0402, BA_0941 95% identical. Cystine transport system permease proteinBC0873, BA_1436 99% identical. Cystine transport ATP-binding proteinBC0874, BA_1437 98% identical@ Ala_Gly_Pro_uptake* L-alanine_uptake_proton_symport_acp. Sodium/proton-dependent alanine carrier proteinBC2831, BA_3351 94% identicalBC0638, BA_1222 98% identicalBC5043, BA_0150 96% identical* Glycine_uptake_sodium_symport_AHdagA. Na(+)-linked D-alanine glycine permeaseBC2317, BA_2876 98% identical* D-alanine_uptake_sodium_symport_AHdagA. Na(+)-linked D-alanine glycine permeaseBC2317, BA_2876 98% identical@ Glu_Asp_uptake* L-glutamate_uptake_proton_sodium_symport_gltT. Proton/sodium-glutamate symport proteinBC1389, BA_1930 97% identicalBC1739, BA_2304 98% identical BC4242, BA_4917 85% identicalBC5218, BA_0303 99% identicalBC1432, BA_1972 98% identical* L-aspartate_uptake_proton_sodium_symport_gltT. Proton/sodium-glutamate symport proteinBC1389, BA_1930 97% identicalBC1739, BA_2304 98% identicalBC4242, BA_4917 85% identicalBC5218, BA_0303 99% identicalBC1432, BA_1972 98% identical@ Polyamine_transport* Putrescine_uptake_spermidine-putrescine_ABC_transporter* Spermidine_uptake_spermidine-putrescine_ABC_transporter. Spermidine/putrescine-binding proteinBC1289, BA_1827 95% identical. Spermidine/putrescine transport system permease protein potBBC1287, BA_1825 95% identical. Spermidine/putrescine transport system permease protein potCBC1288, BA_1826 97% identical. Spermidine/putrescine transport ATP-binding protein potABC1286, BA_1824 98% identical@ Lys_Arg_Orn_uptake* Diaminopimelate_uptake_cystine_ABC_transporter. Cystine-binding proteinBC0402, BA_0941 95% identical. Cystine transport system permease proteinBC0873, BA_1436 99% identical . Cystine transport ATP-binding proteinBC0874, BA_1437 98% identical* L-arginine_uptake_L-ornithine_antiport. Arginine/ornithine antiporterBC0865, BA_1428 98% identicalBC2234, BA_2786 94% identicalBC0629, BA_1212 96% identical* L-lysine_uptake_proton_symport_lysine_permease. Lysine-specific permeaseBC3052, BA_3583 98% identical@ Leu_Ile_Val_uptake* L-leucine_uptake_proton_symport_Leu-Ile-Val_transporter. Branched-chain amino acid transport system carrier proteinBC0685, BA_1278 76% identicalBC1836, BA_3643 70% identicalBC1441, BA_1981 96% identical* L-isoleucine_uptake_proton_symport_Leu-Ile-Val_transporter. Branched-chain amino acid transport system carrier proteinBC0685, BA_1278 76% identicalBC1836, BA_3643 70% identicalBC1441, BA_1981 96% identical* L-valine_uptake_proton_symport_Leu-Ile-Val_transporter. Branched-chain amino acid transport system carrier proteinBC0685, BA_1278 76% identicalBC1836, BA_3643 70% identicalBC1441, BA_1981 96% identical@ Peptide_uptake * Tripeptide_uptake_proton_symport_PTR2. Di-/tripeptide transporterBC0684, BA_1277 98% identical* Dipeptide_uptake_proton_symport_PTR2. Di-/tripeptide transporterBC0684, BA_1277 98% identical* Oligopeptide_uptake_opp_ABC_transporter. Oligopeptide-binding protein oppABC3585, BA_4131 89% identicalBC0215, BA_0775 98% identicalBC0211, BA_0771 96% identicalBC1794, BA_2372 88% identicalBC0241, BA_0798 78% identicalBC2884, BA_3402 74% identicalBC0216, BA_0776 98% identicalBC2848, BA_3371 96% identicalBC0907, BA_1491 97% identicalBC1185, BA_1728 62% identicalBC0859, BA_1422 95% identicalBC2026, BA_2541 95% identical. Oligopeptide transport system permease protein oppBBC0242, BA_0799 88% identicalBC2326, BA_2890 96% identicalBC0908, BA_1492 96% identicalBC2222, BA_2772 91% identicalBC0818, BA_1387 94% identicalBC1180, BA_1729 97% identical . Oligopeptide transport system permease protein oppCBC2327, BA_2891 91% identicalBC0909, BA_1493 97% identicalBC2221, BA_2771 92% identicalBC0819, BA_1388 95% identicalBC1181, BA_1730 98% identical. Oligopeptide transport ATP-binding protein oppDBC1182, BA_1731 99% identical. Oligopeptide transport ATP-binding protein oppFBC0210, BA_0770 98% identicalBC1183, BA_1732 99% identical* Amino_acid_uptake,_unknown_specificity,_proton_symport. Amino acid permeaseBC0837, BA_1404 98% identicalBC3245, BA_3819 100% identicalBC3455, BA_4016 98% identicalBC1807, BA_2387 97% identicalBC5013, BA_0124 97% identical@ Amino_acid_catabolism@ Degradation_of_aromatic_amino_acids@ Tryptophan_degradation* Tryptophan_dioxygenase. 1.13.11.11 - Tryptophan 2,3-dioxygenaseBC2757, BA_3277 98% identical* Arylformamidase. 3.5.1.9 - Arylformamidase sequence not known@ Kynurenine_degradation * L-kynurenine_hydrolysis. 3.7.1.3 - KynureninaseBC2759, BA_3279 95% identical@ Degradation_of_glutamate,_glutamine,_lysine,_proline_and_arginine@ Lysine_degradation* L-lysine_2,3-aminomutase. 5.4.3.2 - Lysine 2,3-aminomutaseBC2251, BA_2804 99% identical* L-beta-lysine_degradation_via_beta-lysine_acetyltransferase_(putative). Beta-lysine acetyltransferase (EC 2.3.1.-)BC2249, BA_2802 93% identical. 6-acetamido-3-oxohexanoate aminotransferase (EC 2.6.1.-)BC2245, BA_2798 98% identical. Putative 3-keto-6-acetamidohexanoate cleavage enzyme (EC 2.3.-.-)BC2247, BA_2800 96% identicalBC2246, BA_2799 98% identical. 4-acetamidobutyryl-CoA deacetylase-thioesterase (EC 3.-.-.-)BC2248, BA_2801 95% identical@ Arginine_degradation* Arginine_utilization_regulation. Arginine utilization regulatory protein rocRBC0473, BA_1064 92% identical* Arginase. 3.5.3.1 - ArginaseBC0185, BA_0735 96% identical* Arginine_degradation_via_arginine_deiminase. 3.5.3.6 - Arginine Deiminase BC0406. 2.1.3.3 - Ornithine CarbamoyltransferaseBC0407BC4126, BA_4808 96% identical@ Ornithine_degradation@ D-ornithine_deamination* D-ornithine_deamination_via_D-alanine_transaminase. 2.6.1.21 - D-alanine AminotransferaseBC2209, BA_2758 91% identicalBC5233, BA_0320 73% identical* D-ornithine_oxidative_deamination. 1.4.99.1 - D-amino-acid DehydrogenaseBC2723, BA_3236 95% identical or . 1.4.3.3 - D-amino Acid Oxidase* Ornithine_degradation_via_ornithine_cyclodeaminase. 4.3.1.12 - Ornithine CyclodeaminaseBC0906, BA_1484 86% identical* Ornithine--glutamate_degradation. 2.6.1.13 - Ornithine--oxo-acid AminotransferaseBC1149, BA_1699 98% identical. 1.5.1.12 - 1-pyrroline-5-carboxylate DehydrogenaseBC5006, BA_0116 99% identical@ L-proline_and_D-proline_degradation* 4-hydroxy-D-proline_degradation. 1.4.99.1 - D-amino-acid DehydrogenaseBC2723, BA_3236 95% identical or . D-proline oxidase (EC 1.4.-.-) or . 1.4.3.3 - D-amino Acid Oxidase. 3.5.4.22 - 1-pyrroline-4-hydroxy-2-carboxylate Deaminase* 4-hydroxy-L-proline_degradation. 1.5.1.12 - 1-pyrroline-5-carboxylate DehydrogenaseBC5006, BA_0116 99% identical. 1.5.1.2 - Pyrroline-5-carboxylate ReductaseBC4134, BA_4817 93% identicalBC3109, BA_3644 92% identicalBC0218, BA_0778 93% identical. 2.6.1.23 - 4-hydroxyglutamate Aminotransferase sequence not known. 2.6.1.1 - Aspartate AminotransferaseBC2896, BA_3415 94% identicalBC4035, BA_4713 96% identicalBC4906, BA_0012 93% identical. 4.1.3.16 - 4-hydroxy-2-oxoglutarate AldolaseBC4844, BA_5517 98% identical* Proline_racemase. 5.1.1.4 - Proline RacemaseBC2834, BA_3354 92% identicalBC2835, BA_3355 89% identicalBC0905, BA_1483 94% identical* D-proline_oxidation. D-proline oxidase (EC 1.4.-.-) or . 1.4.99.1 - D-amino-acid DehydrogenaseBC2723, BA_3236 95% identical or . 1.4.3.3 - D-amino Acid Oxidase* Proline--glutamate_degradation . 1.5.99.8 - Proline DehydrogenaseBC5006, BA_0116 99% identical. 1.5.1.12 - 1-pyrroline-5-carboxylate DehydrogenaseBC5006, BA_0116 99% identical@ Glutamine_deamination* L-glutamine_degradation_via_glutaminase. 3.5.1.2 - GlutaminaseBC3115, BA_3658 99% identicalBC0481, BA_1070 98% identical@ Glutamate_degradation* L-glutamate-D-glutamate.anabolism. 5.1.1.3 - Glutamate RacemaseBC0866, BA_1429 93% identicalBC4496, BA_5151 99% identical@ D-glutamate_degradation* D-alanine_aminotransferase. 2.6.1.21 - D-alanine AminotransferaseBC2209, BA_2758 91% identicalBC5233, BA_0320 73% identical* Gamma-aminobutyrate_shunt. 4.1.1.15 - Glutamate Decarboxylase or . 4.1.1.19 - Arginine DecarboxylaseBC0035, BA_0617 87% identicalBC3962, BA_4643 94% identical. 2.6.1.19 - 4-aminobutyrate AminotransferaseBC0355, BA_0895 96% identical. 1.2.1.16 - Succinate-semialdehyde Dehydrogenase (nad(p)+) BC0357, BA_0897 97% identicalBC2241, BA_2794 93% identical@ Degradation_of_cysteine,_serine_and_alanine@ Serine_degradation* L-serine_transamination. 2.6.1.51 - Serine--pyruvate AminotransferaseBC2399, BA_2963 88% identical or . 2.6.1.45 - Serine--glyoxylate Aminotransferase* L-serine_deamination. 4.2.1.13 - L-serine DehydrataseBC4135, BA_4818 99% identicalBC4136, BA_4819 97% identical. 4.2.1.16 - Threonine DehydrataseBC2400, RBAT10057 82% identicalBC1781, BA_2357 96% identical* L-serine_racemization. Serine racemase (EC 5.1.1.-) or . 5.1.1.10 - Amino-acid Racemase or . 5.1.1.1 - Alanine RacemaseBC0264, BA_0822 96% identicalBC2063, BA_2575 94% identical* D-serine--pyruvate,_NH(,3)_catabolism_(cytosol). 4.2.1.14 - D-serine DehydrataseBC1725, BA_2290 90% identical@ Alanine_degradation@ L-alanine_degradation* L-alanine_oxidative_deamination . 1.4.1.1 - Alanine DehydrogenaseBC4623, BA_5294 99% identicalBC0592, BA_1174 100% identical* L-alanine--D-alanine_anabolism. 5.1.1.1 - Alanine RacemaseBC0264, BA_0822 96% identicalBC2063, BA_2575 94% identical@ D-alanine_degradation* D-alanine_aminotransferase. 2.6.1.21 - D-alanine AminotransferaseBC2209, BA_2758 91% identicalBC5233, BA_0320 73% identical* D-alanine_degradation_D-amino_acid_dehydrogenase. 1.4.99.1 - D-amino-acid DehydrogenaseBC2723, BA_3236 95% identical@ Cysteine_desulfuration* Cysteine--pyruvate,_sulfide,_NH(,3)_catabolism. 4.4.1.8 - Cystathionine Beta-lyaseBC4366, BA_5041 98% identicalBC4254, BA_4928 96% identical@ Degradation_of_branched-chain_amino_acids@ Leucine_degradation@ Leucine_deamination* L-leucine_deamination_via_aminotransferases. 2.6.1.6 - Leucine Aminotransferase sequence not known or . 2.6.1.42 - Branched-chain Amino Acid AminotransferaseBC1776, BA_2352 97% identical BC1396, BA_1936 98% identical* L-leucine_oxidative_deamination_via_leucine_dehydrogenase. 1.4.1.9 - Leucine DehydrogenaseBC4162, BA_4842 99% identical* 2-oxoisocaproate_degradation_via_branched-chain_alpha-keto_acid_dehydrogenase. 1.2.4.4 - 2-oxoisovalerate Dehydrogenase beta subunitBC4158, BA_4838 99% identical. 1.2.4.4 - 2-oxoisovalerate Dehydrogenase alpha subunitBC4159, BA_4839 97% identical. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)BC4157, BA_4837 98% identical. 1.8.1.4 - Dihydrolipoamide DehydrogenaseBC4160, BA_4840 99% identical* Isovalerate_fermentation. 2.3.1.19 - Phosphate ButyryltransferaseBC4163, BA_4843 96% identical. 2.7.2.14 - Branched-chain-fatty-acid KinaseBC4161, BA_4841 97% identical@ Valine_degradation@ Valine_deamination* L-valine_deamination_via_branched-chain-amino-acid_transaminase. 2.6.1.42 - Branched-chain Amino Acid AminotransferaseBC1776, BA_2352 97% identicalBC1396, BA_1936 98% identical* L-valine_deamination_via_dehydrogenases. 1.4.1.8 - Valine Dehydrogenase (nadp+) . 1.4.1.9 - Leucine DehydrogenaseBC4162, BA_4842 99% identical* Ketovaline--isobutyryl-CoA. 1.2.4.4 - 2-oxoisovalerate Dehydrogenase beta subunitBC4158, BA_4838 99% identical. 1.2.4.4 - 2-oxoisovalerate Dehydrogenase alpha subunitBC4159, BA_4839 97% identical. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)BC4157, BA_4837 98% identical. 1.8.1.4 - Dihydrolipoamide DehydrogenaseBC4160, BA_4840 99% identical* Isobutyrate_fermentation. 2.3.1.19 - Phosphate ButyryltransferaseBC4163, BA_4843 96% identical. 2.7.2.14 - Branched-chain-fatty-acid KinaseBC4161, BA_4841 97% identical@ Isoleucine_degradation@ Isoleucine_deamination* L-isoleucine_deamination_via_branched-chain-amino-acid_transaminase. 2.6.1.42 - Branched-chain Amino Acid AminotransferaseBC1776, BA_2352 97% identicalBC1396, BA_1936 98% identical* L-isoleucine_oxidative_deamination_via_leucine_dehydrogenase. 1.4.1.9 - Leucine DehydrogenaseBC4162, BA_4842 99% identical* 3-Methyl-2-oxopentanoate--2-methylbutyryl-CoA . 1.2.4.4 - 2-oxoisovalerate Dehydrogenase beta subunitBC4158, BA_4838 99% identical. 1.2.4.4 - 2-oxoisovalerate Dehydrogenase alpha subunitBC4159, BA_4839 97% identical. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)BC4157, BA_4837 98% identical. 1.8.1.4 - Dihydrolipoamide DehydrogenaseBC4160, BA_4840 99% identical* 2-methylbutyrate_fermentation. 2.3.1.19 - Phosphate ButyryltransferaseBC4163, BA_4843 96% identical. 2.7.2.14 - Branched-chain-fatty-acid KinaseBC4161, BA_4841 97% identical@ Degradation_of_homocysteine,_homoserine_and_threonine@ Threonine_degradation* Threonine--glycine_degradation. 1.1.1.103 - L-threonine 3-dehydrogenaseBC0622, BA_1204 97% identical. 2.3.1.29 - Glycine C-acetyltransferaseBC0621, BA_1203 99% identical* Threonine--2-oxobutanoate_degradation. 4.2.1.16 - Threonine DehydrataseBC2400, RBAT10057 82% identicalBC1781, BA_2357 96% identical* Homocysteine--2-oxobutanoate_catabolism. 4.4.1.1 - Cystathionine Gamma-lyase BC4366, BA_5041 98% identical* Homoserine--2-oxobutanoate_catabolism. 4.4.1.1 - Cystathionine Gamma-lyaseBC4366, BA_5041 98% identical* 2-oxobutanoate_decarboxylation_by_pyruvate_dehydrogenase_complex. 1.2.4.1 - Pyruvate Dehydrogenase E1 Component alpha subunitBC3973, BA_4650 98% identical. 1.2.4.1 - Pyruvate Dehydrogenase E1 Component beta subunitBC3972, BA_4649 99% identical. 2.3.1.12 - Dihydrolipoamide Acetyltransferase Component of pyruvate dehydrogenase complexBC3971, BA_4648 98% identical. 1.8.1.4 - Dihydrolipoamide dehydrogenaseBC3970, BA_4647 99% identical@ Degradation_of_glycine_and_sarcosine* Sarcosine_degradation_by_glycine_oxidase. Glycine oxidase (ec 1.5.3.-)BC0747, BA_1318 93% identical@ Glycine_degradation* Glycine_decarboxylase_complex. 1.4.4.2 - Glycine Dehydrogenase (decarboxylating)BC4225, BA_4902 99% identicalBC4224, BA_4901 97% identical. 2.1.2.10 - AminomethyltransferaseBC4226, BA_4903 100% identical* Glycine_oxidaseBC0747, BA_1318 93% identical @ Degradation_of_histidine,_aspartate_and_asparagine@ Histidine_degradation@ Histidine--glutamate_degradation * Histidine--glutamate,_formamide_catabolism. 4.3.1.3 - Histidine Ammonia-lyaseBC3652, BA_4195 97% identical. 4.2.1.49 - Urocanate HydrataseBC3651, BA_4194 99% identical. 3.5.2.7 - ImidazolonepropionaseBC3650, BA_4193 99% identical. 3.5.3.8 - FormiminoglutamaseBC3649, BA_4192 97% identical* Formamidase. 3.5.1.49 - Formamidase sequence not known@ Asparagine_degradation* Asparaginase. 3.5.1.1 - AsparaginaseBC3094, BA_3638 98% identicalBC1496, BA_2038 95% identical@ Aspartate_degradation* L-aspartate--D-aspartate_anabolism. 5.1.1.13 - Aspartate RacemaseBC4750, BA_5425 90% identicalBC2177, BA_2726 87% identicalBC2623, BA_3158 94% identical@ D-aspartate_degradation* D-aspartate_deamination_via_D-alanine_aminotransferase . 2.6.1.21 - D-alanine AminotransferaseBC2209, BA_2758 91% identicalBC5233, BA_0320 73% identical@ Bacterial_Nucleic_acid_metabolism@ Bacterial_DNA_Repair@ Bacterial_Excision_Repair* Nucleotide_Excision_Repair_NER. Excinuclease ABC subunit ABC2513, RBAT10056 81% identicalBC5167, BA_0253 99% identical. Excinuclease ABC subunit BBC5168, BA_0254 99% identical. Excinuclease ABC subunit CBC4520, BA_5187 97% identical. DNA helicase II (EC 3.6.1.-)BC0340, BA_0876 98% identical. DNA polymerase I (EC 2.7.7.7)BC4587, BA_5255 98% identical. 6.5.1.2 - Dna Ligase (nad+)BC0341, BA_0877 98% identical. 4.2.99.18 - Dna-(apurinic Or Apyrimidinic Site) LyaseBC1548, BA_2089 94% identical. Transcription-repair coupling factorBC0058, BA_0641 98% identical. DNA repair protein recNBC4173, RBAT10024 98% identical . Uvr repair proteinBA_3794BXB0094. UvrC-like proteinBC2713, BA_3227 87% identicalBC3107, BA_3641 92% identical. UV-ENDONUCLEASE (UvsE/Uve1/UvdE Family)BC0260, BA_0818 92% identicalBC5347, BA_0449 90% identical* Base_Excision_Repair_BER. 2.1.1.63 - Methylated-dna--[protein]-cysteine S-methyltransferaseBC3741, BA_4345 89% identicalBC2024, BA_2538 87% identical. Ada Regulatory ProteinBC3740, BA_4344 89% identical. 3.2.2.21 - Dna-3-methyladenine Glycosylase IiBC3742, BA_4346 86% identicalBC0468, BA_1003 94% identical. Uracil-DNA glycosylase (EC 3.2.2.-)BC5398, BA_0505 93% identical. Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-)BC4403, BA_5077 96% identical. Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)BC5157, BA_0243 100% identicalBC3037, BA_3568 90% identical. 4.2.99.18 - Dna-(apurinic Or Apyrimidinic Site) LyaseBC1548, BA_2089 94% identical . 3.2.2.23 - Dna-formamidopyrimidine GlycosylaseBC4586, BA_5254 98% identical. A/G-specific adenine DNA glycosylase (EC 3.2.2.-)BC0504, BA_1092 95% identical. 3.1.11.2 - Exodeoxyribonuclease IiiBC0415, BA_0947 90% identicalBC3739, BA_4343 94% identical. 3.1.21.2 - Deoxyribonuclease Iv (phage T4-induced)BC4282, BA_4956 98% identical. 6.5.1.2 - Dna Ligase (nad+)BC0341, BA_0877 98% identical@ Mismatch_Repair* Long-Patch_MMR. DNA mismatch repair protein mutLBC3768, BA_4374 96% identical. DNA mismatch repair protein mutSBC3769, BA_4375 97% identicalBC3480, BA_4039 96% identicalBC4552, BA_5220 98% identical. Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)BC5157, BA_0243 100% identicalBC3037, BA_3568 90% identicalBC0540, BA_1114 94% identical. MutT/nudix family proteinBC4636, BA_5308 81% identicalBC2686, BA_3192 83% identical. A/G-specific adenine DNA glycosylase (EC 3.2.2.-) BC0504, BA_1092 95% identical. Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-)BC4403, BA_5077 96% identical. 3.1.11.6 - Exodeoxyribonuclease ViiBC4179, BA_4856 98% identical. DNA polymerase III alpha subunit (EC 2.7.7.7)BC3816, BA_4426 98% identicalBC4605, BA_5272 96% identicalBC3611, BA_4159 92% identical. DNA polymerase III, epsilon chain (EC 2.7.7.7)BC3538, BA_4085 87% identical. DNA polymerase III, beta chain (EC 2.7.7.7)BC2693, BA_3202 86% identicalBC0002, BA_0597 96% identical. DNA polymerase III, delta subunit (EC 2.7.7.7)BC4321, BA_4995 97% identical. DNA polymerase III, delta' subunit (EC 2.7.7.7)BC0037, BA_0619 96% identical. DNA polymerase III subunit gamma/tau (EC 2.7.7.7)BC0024, BA_0613 96% identical. Single-strand DNA binding proteinBC5475, BA_0580 98% identicalBC2154, BA_2661 91% identical* Short-Patch_MMR. DNA mismatch repair protein mutSBC3769, BA_4375 97% identicalBC3480, BA_4039 96% identical BC4552, BA_5220 98% identical. DNA mismatch repair protein mutLBC3768, BA_4374 96% identical. DNA polymerase I (EC 2.7.7.7)BC4587, BA_5255 98% identical* Recombinational_Repair_RER. 3.1.11.5 - Exodeoxyribonuclease VBC4389, BA_5063 98% identical. ATP-dependent nuclease subunit ABC1138, BA_1689 97% identical. ATP-dependent nuclease subunit BBC1137, BA_1688 96% identical. Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-)BC4403, BA_5077 96% identical. ATP-dependent DNA helicase recQ (EC 3.6.1.-)BC2815, BA_3339 97% identicalBC1485, BA_2026 94% identical. ATP-dependent DNA helicase recG (EC 3.6.1.-)BC3853, BA_4464 98% identical. Regulatory protein recXBC0498, BA_1086 95% identical. Recf ProteinBC0004, BA_0599 98% identical. DNA repair protein recOBC4295, BA_4969 98% identical. Recombination protein recRBC0026, BA_0615 99% identical . Holliday junction DNA helicase ruvABC4415, BA_5089 99% identical. Holliday junction DNA helicase ruvBBC4414, BA_5088 97% identical. DNA repair protein recNBC4173, RBAT10024 98% identical. DNA polymerase I (EC 2.7.7.7)BC4587, BA_5255 98% identical. DNA repair protein radCBC4461, BA_5125 87% identical. DNA repair protein RadABC0103, BA_0671 99% identical. Recombination protein recUBC1554, BA_2092 96% identical. Primosomal protein N'BC3866, BA_4477 96% identical. Primosomal protein dnaIBC4579, BA_5247 98% identical. Replicative DNA helicase (EC 3.6.1.-)BC0956, BA_1513 96% identicalBC5470, BA_0575 97% identical. DNA primase (EC 2.7.7.-)BC4290, BA_4965 88% identical* SOS_Error-Prone_Repair_SOS. Regulatory protein recXBC0498, BA_1086 95% identical. 3.4.21.88 - Repressor Lexa BC3690, BA_4235 100% identical. ATP-dependent helicase, DinG familyBC1543, BA_2084 91% identicalBC1565, BA_2103 98% identical. Excinuclease ABC subunit ABC2513, RBAT10056 81% identicalBC5167, BA_0253 99% identical. Excinuclease ABC subunit BBC5168, BA_0254 99% identical. DNA polymerase IV (EC 2.7.7.7)BC4142, BA_4822 95% identical. Recombination protein recRBC0026, BA_0615 99% identical. Holliday junction DNA helicase ruvABC4415, BA_5089 99% identical. Holliday junction DNA helicase ruvBBC4414, BA_5088 97% identical. ATP-dependent DNA helicase recG (EC 3.6.1.-)BC3853, BA_4464 98% identical. Cell division inhibitorBC0497, BA_1085 90% identical. Cell division protein ftsZBC3906, BA_4515 81% identical. DinB proteinBC2315, BA_2874 90% identical@ Bacterial_Direct_Damage_Reversal* Bacterial_specialized_photorepair . Spore photoproduct lyase (EC 4.1.99.-)BC4205, BA_4882 97% identical* Bacterial_photorepair. 4.1.99.3 - Deoxyribodipyrimidine PhotolyaseBC3137, BA_3689 90% identical* Bacterial_DNA-joining. 6.5.1.2 - Dna Ligase (nad+)BC0341, BA_0877 98% identical* Bacterial_alkylation-damage_repair. Ada Regulatory ProteinBC3740, BA_4344 89% identical. 2.1.1.63 - Methylated-dna--[protein]-cysteine S-methyltransferaseBC3741, BA_4345 89% identicalBC2024, BA_2538 87% identical@ Bacterial_Restriction_Modification* Restriction_Modification_Type_Mmr. 5-methylcytosine-specific restriction enzyme MRR (EC 3.1.21.-)RBAT10021* Restriction_Modification_Type_Mcr. 5-methylcytosine-specific restriction enzyme A (EC 3.1.21.-)BC2144BC2145. 5-methylcytosine-specific Restriction Related EnzymeBC2236, BA_2788 88% identical* Restriction_Modification_Type_I. Type I Restriction-modification System Specificity SubunitBC4458 BC4460. Type I Restriction-modification System Methylation SubunitBC4459. Type I Restriction-modification System Restriction Subunit (ec 3.1.21.3)BC4456BC4457* Restriction_Modification_TypeII. Type Ii Restriction-modification System Restriction Subunit (ec 3.1.24.1)BC0939BC0940. Type Ii Restriction-modification System Methylation SubunitBC0941Pathways from the Integrated Genomics proprietary pathway collection are organized into the functional hierarchy. Only those parts of the functional hierarchy that are discussed in the paper are presented in the table. For Ban CDSs that were not identified by GenBank, Integrated Genomics CDS numbers are used; sequences of these CDSs along with annotations and partial reconstructions of Bce and Ban can be found at http://www.ergo-light.com. CDSs in the table are pairs of close bi-directional best hits from Bce and Ban that are listed according to their functional assignment, which corresponds to the functional role in the pathway. Percent of identity is that of protein sequences.

Table 1. Comparative Analysis of Bce ATCC 14579 and Ban A2012 Based on the Metabolic

Details

Download

Copyright

We respect the copyrights and intellectual property rights of all users. All uploaded documents are either original works of the uploader or authorized works of the rightful owners.

Support