Faculty of Science and Technology Department of Life and Environmental Science Exploring the potential application of glucuronides as a prognostic biomarker for disease Volume 2: References and Appendices A thesis submitted as part for the requirement of Masters by Research Jack Wieland th 30 September 2019 Contents References.......................................................................................................... 2 Appendices ..................................................................................................... 189 Appendix1: Log Book Evidence for Chapter 7 ............................................. 190 Appendix 2: Inclusion and exclusion of retrieved articles ............................ 200 Colorectal cancer inclusion and exclusion ............................................... 200 Type 2 Diabetes inclusion and exclusion ................................................. 222 Parkinson’s disease inclusion and exclusion ........................................... 230 Prostate cancer inclusion and exclusion .................................................. 233 Breast cancer inclusion and exclusion ..................................................... 248 Liver cancer inclusion and exclusion ....................................................... 261 Appendix 3: Evidence of permission granted .............................................. 275 Appendix 4: Supplementary information ...................................................... 277 A4 1.0: Organic anion transporters .......................................................... 277 1 References Abcam., 2018. Human p53 ELISA Kit (ab171571) [online]. Available from: https://www.abcam.com/human-p53-elisa-kit-ab171571.html [Accessed 27th December 2018] Abdullah, A., Kitteringham, N. R., Jenkins, R. E., et al., 2012. Analysis of the role of Nrf2 in the expression of liver proteins in mice using two-dimensional gel- based proteomics. Pharmacological Reports [online], 64 (3), 680 – 697. Abdullah, S. Shafayat, H., Saifuzzaman, S., et al., 2016. Genetic polymorphisms of CYP3A4*1B of cervical cancer patients in Bangladeshi population, Bangladesh. International Journal of Advances in Medicine [online], 3(3) 455 – 459. Abed, A. R and Hussein, I. M., 2017. A Comparative Study Between Specific and Non-specific Antifungal Agents to Treat the Rhodotorula mucilaginosa Athletes Foot. Biomedical & Pharmacology Journal [online], 10 (4), 2153 – 2160. Abraham, T. T., Barnes, A. J., Lowe, R. H., et al., 2009. Urinary MDMA, MDA, HMMA, and HMA Excretion Following Controlled MDMA Administration to Humans. Journal of Aanalytical Toxicology [online], 33 (8), 439 – 446. Adamson, I. Y., Bowden, D. H., et al., 1977. Lung injury induced by butylated hydroxytoluene: cytodynamic and biochemical studies in mice. Laboratory Investigation [online], 36 (1), 26 – 32. Adedokun, O., Titilope, K and Awodugba, A. O., Review on Natural Dye- Sensitized Solar Cells (DSSCs). International Journal of Engineering Technologies [online], 2 (2), 34 – 41. Abnet, C. C., Fagundes, R. B., Strickland, P. T., et al., 2007. The influence of genetic polymorphisms in Ahr , CYP1A1, CYP1A2, CYP1B1, GST M1, GST T1 2 and UGT1A1 on urine 1-hydroxypyrene glucuronide concentrations in healthy subjects from Rio Grande do Sul, Brazil. Carcinogenesis [online], 28 (1), 112 – 117. Adly, L., Hill, D., Sherman, M. E., et al., 2006. Serum concentrations of estrogens, sex hormone‐binding globulin, and androgens and risk of breast cancer in postmenopausal women. International Journal of Cancer [online], 119 (10), 2402 – 2407. Aguiar, J. A., Tamminga, A., Lobb, B., et al., 2019. The impact of cigarette smoke exposure, COPD, or asthma status on ABC transporter gene expression in human airway epithelial cells. Scientific Reports [online], DOI:10.1038/s41598-018-36248-9. Ahern, T. P., Christensen, M., Cronin-Fenton, D. P., et al., 2011. Functional polymorphisms in UDP-glucuronosyltransferases and recurrence in tamoxifen- treated breast cancer survivors. Cancer Epidemiology, Biomarkers & Prevention [online], 20 (9), 1937 - 1943. Akeju, O., Song, A. H., Hamilos, A. E., et al., 2016. Electroencephalogram signatures of ketamine anesthesia-induced unconsciousness. Clinical Neurophysiology [online], 127 (6), 2114 – 2422. Alam, K., Farasyn, T., Di ng, K., et al., 2018. Characterization of Liver- and Cancer-type-Organic Anion Transporting Polypeptide (OATP) 1B3 Messenger RNA Expression in Normal and Cancerous Human Tissues. Drug Metabolism Letters [online], 12 (1), 24 – 32. Alam, P., Alam, A., Anwer, M. K and Alqasoumi, S., 2014. Quantitative estimation of hesperidin by HPTLC in different varieties of citrus peels. Asian Pacific Journal of Tropical Biomedicine [online], 4 (4), 262 – 266. 3 Al-Arifa, N and Jahan, N., 2016. Association of Glutathione-S-Transferase P1 (GSTP1) and Group-Specific Component (GC) Polymorphism with the Risk of Asthma in Pakistani Population. Pakistan Journal of Zoology [online], 48 (4), 937 – 942. Alcoloea, M. P., Casado, P., Rodríguez-Prados, J. C., et al., 2012. Phosphoproteomic analysis of leukemia cells under basal and drug-treated conditions identifies markers of kinase pathway activation and mechanisms of resistance. Molecular & Cellular Proteomics [online], 11 (8), 453 – 466. Al-Diab, O., Al-Motassem, Y., Al Manassrah, E., et al., 2015. Genotype and Haplotype Analysis of ABCB1 at 1236, 2677 and 3435 among Jordanian Population. Tropical Journal of Pharmaceutical Research [online], 14 (6), 1013 – 1019. Aleksunes, L. M., Campion, S. N., Goedken, M. J et al., 2008. Acquired Resistance to Acetaminophen Hepatotoxicity is Associated with Induction of Multidrug Resistance-Associated Protein 4 (Mrp4) in Proliferating Hepatocytes. Toxicological Sciences [online], 104 (2), 261 – 273. Aleksunes, L. M and Klaassen, C. D., 2012. Coordinated Regulation of Hepatic Phase I and II Drug-Metabolizing Genes and Transporters using AhR-, CAR-, PXR-, PPARα-, and Nrf2-Null Mice. Drug Metabolism and Disposition [online], 40 (7), 1366 – 1379. Alkharfy, K. M., Alghamdi, A. M., Bagulb, K. M., et al., 2013. Distribution of selected gene polymorphisms of UGT1A1 in a Saudi population. Archives of Medical Science [online], 9 (4), 731 – 738. Allard, P and Colaiácovo, M. P., 2010. Bisphenol A impairs the double-strand break repair machinery in the germline and causes chromosome abnormalities. PNAS [online], 107 (47), 20405 – 20410. 4 Almaiman, A. A., 2018. Effect of testosterone boosters on body functions: Case report. International Journal of Health Sciences [online], 12 (2), 86 – 90. Al-Shoumer, K. A. A. S., Al-Asoosi, A. A., Ali, A. H., et al., 2013. Does insulin resistance in type 2 diabetes alter vitamin D status? Primary Care Diabetes [online], 7 (4), 283 – 287. Alva, M. L., Hoerger, T. J., Zhang, P et al., 2017. Identifying risk for type 2 diabetes in different age cohorts: does one size fit all? BMJ Open Diabetes Research & Care [online], 5 (1), e000447. Amato, L., Davoli, M., Ferri, M. M. F., 2003. Methadone at tapered doses for the management of opioid withdrawal. Cochrane Database of Systematic Reviews [online], https://doi.org/10.1002/14651858.CD003409.pub2. Amberger, J. S., Bocchini, C. A., Schiettecatte, et al., 2015. OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders. Nucleic Acids Research [online], 43, 789 – 798. Amberger, J. S., Bocchini, C. A., Scott, A. F., et al., 2019. OMIM.org: leveraging knowledge across phenotype–gene relationships. Nucleic Acids Research [online], 47, 1038 – 1043. Ameyaw, M-M., Regateiro, F., Li, T., et al., 2001. MDR1 pharmacogenetics: frequency of the C3435T mutation in exon 26 is significantly influenced by ethnicity. Pharmacogenetics [online], 11 (3), 217 – 221. An, Y., Young, S. P., Hillman, S. L., et al., 2000. Liquid Chromatographic Assay for a Glucose Tetrasaccharide, a Putative Biomarker for the Diagnosis of Pompe Disease. Analytical Biochemistry [online], 287 (1), 136 – 143. Anderson, L. N., Cotterchio, M., Mirea, L., et al., 2012. Passive Cigarette Smoke Exposure During Various Periods of Life, Genetic Variants, and Breast Cancer Risk Among Never Smokers. American Journal of Epidemiology [online], 175 (4), 289 – 301. 5 Ando Y., Saka, H., Ando M., et al., 2000. Polymorphisms of UDP- Glucuronosyltransferase Gene and Irinotecan Toxicity: A Pharmacogenetic Analysis. Cancer Research [online], 60, 6921 – 6926. Ando, Y., Saka, H., Asai, G., et al., 1998. UGT1A1 genotypes and glucuronidation of SN-38, the active metabolite of irinotecan. Annals of Oncology [online], 9 (8), 845 – 847. Andrè, P., Debray, M., Scherrmann, J-M., et al., 2009. Clonidine transport at the mouse blood–brain barrier by a new H+ antiporter that interacts with addictive drugs. Journal of Cerebral Blood Flow & Metabolism [online], 29, 1293 –1304. Annesley, T. M and Clayton, L. T., 2005. Quantification of Mycophenolic Acid and Glucuronide Metabolite in Human Serum by HPLC-Tandem Mass Spectrometry. Clinical Chemistry [online], 51 (5), 872 – 877. Antic, S., Wolf, M. T., Skucha, A., et al., 2015. General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells. Molecular and Cellular Biology [online], 35, 2309 – 2320. Antolino-Lobo, I., Meulenbelt, J., Molendijik, J., et al., 2011. nduction of glutathione synthesis and conjugation by 3,4-methylenedioxymethamphetamine (MDMA) and 3,4-dihydroxymethamphetamine (HHMA) in human and rat liver cells, including the protective role of some antioxidants. Toxicology [online], 289 (2-3),