Focus on Molluscan Shellfish Ecology/Restoration, Especially for Oysters (Crassostrea virginica), Living Shorelines, Climate Change/Acidification, Remote Sensing, and Many Other Related Topics (Revision date 2/21/18 for website) Table of Contents General Restoration Papers, Recent Shellfish Reviews and Related Subjects (relevant Taxonomy, focus Biogenic Molluscan Species, Oysters, Scale, Ecosystem Services, Climate Change, Stessors, Coral Reefs, etc.) ............................................................................................................................................................... 3 Fisheries and Aquaculture Information, especially Reviews for Molluscs ................................................. 22 General Climate, Physiology, and Ocean Acidification, Sedimentation, Stress, Related Papers, Reviews, Websites ...................................................................................................................................................... 22 General Restoration Literature, Approaches, etc. ....................................................................................... 24 Impacts and Site Selection for Aquaculture, Alternative Energy (wind turbines), etc. .............................. 27 Disturbance From Harvesting, Non-Consumptive Human Impacts (Includes abandoned gear) ................ 28 Some Classic Works (and Reviews) ........................................................................................................... 31 General Marine Ecological Contributions, Metapopulations, Incl. Reproduction, Habitats, Attraction- Production Issue, Reserves, etc. .................................................................................................................. 36 General Bivalve/Gastropod Feeding, Reproduction, Growth, Ecology Papers (scallops, mussels, Mya included) ..................................................................................................................................................... 41 Living Shorelines, Erosion, Sea Level Rise, Nourishment, Related Topics by Location, etc. (In Progress) .................................................................................................................................................................... 45 Recent Bivalve Contributions (w/ focus on Oyster Restoration includes recruitment, ecosystem services, diseases, feeding, reserves, reproduction, larvae, etc.) primarily: .............................................................. 59 Olympia oyster (O. lurida), Non-Crassostrea Work, U.S., Canada and Elsewhere ................................... 91 Tridacna and other Epibenthic Bivalves ..................................................................................................... 98 Mollusc Shells, Shape, Flow, Food, Behavior, Temperature, Salinity, DO, etc. (see also Paleobiology, Anthropology, Taphonomy, Geomorphology of Oysters and Reefs below): ............................................. 98 Reef Development, Habitat Landscapes, Organisms Associations, Shape, Flow, Edge Effects, Halos, Geomorphology, Paleontology, Taphonomy (includes molluscs, corals, etc.): ........................................ 102 Cultch Quarantine for Restoration ............................................................................................................ 104 Some Pertinent “Grey” Literature (Oysters, Clams, etc.) and websites .................................................... 105 LDC, FAU Pg 1 Please do not use without permission Papers/Reports/Books/Handbooks Related to Sampling Habitats, Reviews (focus on Oysters, Marsh, Mudflats, etc.) ........................................................................................................................................... 113 Relevant Genetics or Population (Fisheries, etc.) Models for Natural and Restored Reefs, Molecular, Carrying Capacity, Aquaculture as An Alternative to Restoration, B-P Coupling ................................... 116 Modeling Restoration, Oyster Reef Habitat, Carrying Capacity, Aquaculture, ShellGis ......................... 127 Ocean Acidification, pH, El Niño, N& C trading, Stressors, Climate-Disease Impacts, Sea-Level Rise, and Related Topics (See also Paleo and Shell Budgets) ........................................................................... 129 Carbonate and Shell Budgets and Restoration, etc. (see also Paleo section for more) ............................. 140 Paleobiology, Anthropology, Taphonomy, Geomorphology of Oysters and Reefs (see also Shells, Shape, Flow, Food, DO, etc. Section above and Boonea): ................................................................................... 143 Shellfish-SAV, Bloom Interactions, Some Bivalve Aquaculture Interactions with Natural Systems, Benthos (see also Relevant Genetics, etc.) ............................................................................................... 153 Alternative Substrates for Restoration ...................................................................................................... 161 Predation/Competition/Refugia (other Bivalves also, See Paleobiol. For Vermeij et al.) ........................ 164 Predation on Oysters, Sublethdal, Induction, NCEs, Other Molluscs, Decapod Crabs on Reefs ............. 175 Volunteerism in Restoration, Community Restoration Work, etc. ........................................................... 180 Boat Wakes/Anthropogenic Impacts/Freshwater, Turbidity, and Diversions/Hurricanes, Erosion/Living Shorelines, Specific Marine-Related Statistical Treatments ..................................................................... 183 General Statistics Texts, Modeling, Ecological Analyses and Relevant Critiques ................................... 197 Remote Sensing, Status and Trends and Mapping Related to Habitats, Especially Shellfish Habitats (Subtidal and Intertidal), Misc. Methods, Sed Traps, etc.......................................................................... 202 Pollution, Plastics, and Impacts on Bivalves and Other Faunal Associates (Focus on Reefs) ................. 210 General Intertidal and Subtidal Reef Assessments (Fish, Inverts, etc.) .................................................... 215 Pinnotherids and Related Lit. .................................................................................................................... 216 Intertidal Oyster Reefs, Disease, Exposure, etc. ....................................................................................... 219 Diseases (Dermo, MSX, QPX, Vibrio, etc.) ............................................................................................. 221 Parasites of Molluscs and Crabs ............................................................................................................... 226 Birds associated with Shellfish Habitats, Beaches, Mudflats (Methods also) .......................................... 226 Eutrophication, Denitrification, Nitrogen and C Sequestration (Reviews, Methods also) ...................... 231 Non-Native Impacts, Dispersal of Oysters, Mya, etc. (does not include most mussel work) ................... 232 Perna viridis and Interactions with Oysters .............................................................................................. 248 Feeding by Gastropods, Intertidally and Subtidally .................................................................................. 249 General Faunal Summaries by Region, State, Area (see Heck and Spitzer also below) .......................... 249 LDC, FAU Pg 2 Please do not use without permission General Macroalgal Summaries by Region .............................................................................................. 257 Species- or Taxa- Specific Information .................................................................................................... 260 Boonea impressa (related archaeology) and Other Molluscan Parasites (Eulimids) ................................ 260 Geukensia and Other Mussels on Reefs and in Marine and Estuaries (also Dreissenids) ........................ 264 Palaemonetes- (Grass shrimp) Related and Brachyuran (especially xanthid), Porcellanid Papers .......... 270 General Restoration Papers, Recent Shellfish Reviews and Related Subjects (relevant Taxonomy, focus Biogenic Molluscan Species, Oysters, Scale, Ecosystem Services, Climate Change, Stessors, Coral Reefs, etc.) Airoldi, L., and M.W. Beck, 2007. Loss, status and trends for coastal marine habitats of Europe. Oceanogr. Mar. Biol. Annu. Rev. 45:345-405. Alleway, H.K., and S.D. Connell, 2015. Loss of an ecological baseline through the eradication of oyster reefs from coastal ecosystems and human memory. Conservation Biology 29:795-804. Ostrea angasi Altieri, A.H., and J. van de Koppel, 2014. Foundation species in marine ecosystems. Ch. 3., 37- 56pp. In: M.D. Bertness, B.J. Silliman, and J.J. Stachowicz (Eds.), Marine community ecology and conservation, Sinauer Associates, Sunderland, MA. Anderson, S.C., J.M. Flemming, R. Watson, H.K. Lotze, 2011. Rapid global expansion of invertebrate fisheries: trends, drivers, and ecosystem effects. PLOS ONE 6, e14735. doi: 10.1371/journal.pone.0014735; pmid: 21408090. Arkema, K.K., G. Guannel, G. Verutes, S.A. Wood, A. Guerry, M. Ruckelshaus, P. Kareiva, M. Lacayo, and J.M. Silver, 2013. Coastal habitats shield people and property from sea- level rise and storms. Nature Climate Change 3:913–918. (includes oysters as one of the 7 habitats). Arnold. W.S., 2008. Application of larval