Package ‘Luminescence’ September 2, 2021 Type Package Title Comprehensive Luminescence Dating Data Analysis Version 0.9.15 Date 2021-08-24 Author Sebastian Kreutzer [aut, trl, cre, dtc] (<https://orcid.org/0000-0002-0734-2199>), Christoph Burow [aut, trl, dtc] (<https://orcid.org/0000-0002-5023-4046>), Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>), Margret C. Fuchs [aut] (<https://orcid.org/0000-0001-7210-1132>), Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>), Manfred Fischer [aut, trl], Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>), Norbert Mercier [aut] (<https://orcid.org/0000-0002-6375-9108>), Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>), Claire Christophe [ctb], Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>), Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>), Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>), Anne Philippe [aut] (<https://orcid.org/0000-0002-5331-5087>), Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>), Svenja Riedesel [aut] (<https://orcid.org/0000-0003-2936-8776>), Martin Autzen [aut] (<https://orcid.org/0000-0001-6249-426X>), Pierre Guibert [ctb] (<https://orcid.org/0000-0001-8969-8684>), Dirk Mittelstrass [aut] (<https://orcid.org/0000-0002-9567-8791>), Harrison J. Gray [aut] (<https://orcid.org/0000-0002-4555-7473>), Markus Fuchs [ths] Maintainer Sebastian Kreutzer <[email protected]> Description A collection of various R functions for the purpose of Luminescence dating data analysis. This includes, amongst others, data import, export, application of age models, curve deconvolution, sequence analysis and plotting of equivalent dose distributions. Contact Package Developers <[email protected]> License GPL-3 1 2 BugReports https://github.com/R-Lum/Luminescence/issues Depends R (>= 4.0), utils LinkingTo Rcpp (>= 1.0.7), RcppArmadillo (>= 0.10.6.0.0) Imports bbmle (>= 1.0.24), data.table (>= 1.14.0), DEoptim (>= 2.2-6), httr (>= 1.4.2), lamW (>= 2.1.0), matrixStats (>= 0.60.0), methods, minpack.lm (>= 1.2-1), plotrix (>= 3.8-1), raster (>= 3.4-10), readxl (>= 1.3.1), shape (>= 1.4.6), parallel, XML (>= 3.99), zoo (>= 1.8) Suggests spelling (>= 2.2), RLumShiny (>= 0.2.2), plotly (>= 4.9.3), rmarkdown (>= 2.10), rstudioapi (>= 0.13), rjags (>= 4-10), coda (>= 0.19-4), pander (>= 0.6.3), testthat (>= 3.0.2), tiff (>= 0.1-8), devtools (>= 2.4.1), R.rsp (>= 0.44.0) VignetteBuilder R.rsp URL https://CRAN.R-project.org/package=Luminescence Encoding UTF-8 Language en-GB Collate 'Analyse_SAR.OSLdata.R' 'CW2pHMi.R' 'CW2pLM.R' 'CW2pLMi.R' 'CW2pPMi.R' 'Luminescence-package.R' 'PSL2Risoe.BINfileData.R' 'RcppExports.R' 'replicate_RLum.R' 'RLum-class.R' 'smooth_RLum.R' 'names_RLum.R' 'structure_RLum.R' 'length_RLum.R' 'set_RLum.R' 'get_RLum.R' 'RLum.Analysis-class.R' 'RLum.Data-class.R' 'bin_RLum.Data.R' 'RLum.Data.Curve-class.R' 'RLum.Data.Image-class.R' 'RLum.Data.Spectrum-class.R' 'RLum.Results-class.R' 'set_Risoe.BINfileData.R' 'get_Risoe.BINfileData.R' 'Risoe.BINfileData-class.R' 'Risoe.BINfileData2RLum.Analysis.R' 'Risoe.BINfileData2RLum.Data.Curve.R' 'Second2Gray.R' 'addins_RLum.R' 'analyse_Al2O3C_CrossTalk.R' 'analyse_Al2O3C_ITC.R' 'analyse_Al2O3C_Measurement.R' 'analyse_FadingMeasurement.R' 'analyse_IRSAR.RF.R' 'analyse_SAR.CWOSL.R' 'analyse_SAR.TL.R' 'analyse_baSAR.R' 'analyse_pIRIRSequence.R' 'analyse_portableOSL.R' 'app_RLum.R' 'apply_CosmicRayRemoval.R' 'apply_EfficiencyCorrection.R' 'calc_AliquotSize.R' 'calc_AverageDose.R' 'calc_CentralDose.R' 'calc_CobbleDoseRate.R' 'calc_CommonDose.R' 'calc_CosmicDoseRate.R' 'calc_FadingCorr.R' 'calc_FastRatio.R' 'calc_FiniteMixture.R' 'calc_FuchsLang2001.R' 'calc_HomogeneityTest.R' 'calc_Huntley2006.R' 'calc_IEU.R' 'calc_Kars2008.R' 'calc_Lamothe2003.R' 'calc_MaxDose.R' 'calc_MinDose.R' 'calc_OSLLxTxDecomposed.R' 'calc_OSLLxTxRatio.R' 'calc_SourceDoseRate.R' 'calc_Statistics.R' 'calc_TLLxTxRatio.R' 'calc_ThermalLifetime.R' 'calc_WodaFuchs2008.R' 'calc_gSGC.R' 'calc_gSGC_feldspar.R' 'convert_Activity2Concentration.R' 'convert_BIN2CSV.R' 'convert_Concentration2DoseRate.R' R topics documented: 3 'convert_Daybreak2CSV.R' 'convert_PSL2CSV.R' 'convert_RLum2Risoe.BINfileData.R' 'convert_SG2MG.R' 'convert_Wavelength2Energy.R' 'convert_XSYG2CSV.R' 'extract_IrradiationTimes.R' 'fit_CWCurve.R' 'fit_EmissionSpectra.R' 'fit_LMCurve.R' 'fit_OSLLifeTimes.R' 'fit_SurfaceExposure.R' 'fit_ThermalQuenching.R' 'get_Layout.R' 'get_Quote.R' 'get_rightAnswer.R' 'github.R' 'install_DevelopmentVersion.R' 'internal_as.latex.table.R' 'internals_RLum.R' 'merge_RLum.Analysis.R' 'merge_RLum.Data.Curve.R' 'merge_RLum.R' 'merge_RLum.Results.R' 'merge_Risoe.BINfileData.R' 'methods_DRAC.R' 'methods_RLum.R' 'plot_AbanicoPlot.R' 'plot_DRCSummary.R' 'plot_DRTResults.R' 'plot_DetPlot.R' 'plot_FilterCombinations.R' 'plot_GrowthCurve.R' 'plot_Histogram.R' 'plot_KDE.R' 'plot_NRt.R' 'plot_RLum.Analysis.R' 'plot_RLum.Data.Curve.R' 'plot_RLum.Data.Image.R' 'plot_RLum.Data.Spectrum.R' 'plot_RLum.R' 'plot_RLum.Results.R' 'plot_ROI.R' 'plot_RadialPlot.R' 'plot_Risoe.BINfileData.R' 'plot_ViolinPlot.R' 'read_BIN2R.R' 'read_Daybreak2R.R' 'read_PSL2R.R' 'read_RF2R.R' 'read_SPE2R.R' 'read_TIFF2R.R' 'read_XSYG2R.R' 'report_RLum.R' 'scale_GammaDose.R' 'template_DRAC.R' 'tune_Data.R' 'use_DRAC.R' 'utils_DRAC.R' 'verify_SingleGrainData.R' 'write_R2BIN.R' 'write_RLum2CSV.R' 'zzz.R' RoxygenNote 7.1.1 NeedsCompilation yes Repository CRAN Date/Publication 2021-09-02 21:10:47 UTC R topics documented: Luminescence-package . .6 analyse_Al2O3C_CrossTalk . .8 analyse_Al2O3C_ITC . 10 analyse_Al2O3C_Measurement . 13 analyse_baSAR . 16 analyse_FadingMeasurement . 24 analyse_IRSAR.RF . 28 analyse_pIRIRSequence . 35 analyse_portableOSL . 38 analyse_SAR.CWOSL . 40 Analyse_SAR.OSLdata . 45 analyse_SAR.TL . 48 apply_CosmicRayRemoval . 51 apply_EfficiencyCorrection . 53 app_RLum . 55 4 R topics documented: as .............................................. 56 BaseDataSet.ConversionFactors . 57 BaseDataSet.CosmicDoseRate . 58 BaseDataSet.FractionalGammaDose . 60 BaseDataSet.GrainSizeAttenuation . 61 bin_RLum.Data . 61 calc_AliquotSize . 63 calc_AverageDose . 66 calc_CentralDose . 69 calc_CobbleDoseRate . 71 calc_CommonDose . 73 calc_CosmicDoseRate . 75 calc_FadingCorr . 80 calc_FastRatio . 84 calc_FiniteMixture . 86 calc_FuchsLang2001 . 90 calc_gSGC . 92 calc_gSGC_feldspar . 94 calc_HomogeneityTest . 96 calc_Huntley2006 . 98 calc_IEU . 103 calc_Kars2008 . 105 calc_Lamothe2003 . 107 calc_MaxDose . 110 calc_MinDose . 113 calc_OSLLxTxDecomposed . 119 calc_OSLLxTxRatio . 121 calc_SourceDoseRate . 124 calc_Statistics . 127 calc_ThermalLifetime . 129 calc_TLLxTxRatio . 132 calc_WodaFuchs2008 . 135 convert_Activity2Concentration . 136 convert_BIN2CSV . 138 convert_Concentration2DoseRate . 139 convert_Daybreak2CSV . 142 convert_PSL2CSV . 143 convert_RLum2Risoe.BINfileData . 144 convert_SG2MG . 145 convert_Wavelength2Energy . 147 convert_XSYG2CSV . 149 CW2pHMi . 151 CW2pLM . 155 CW2pLMi . 157 CW2pPMi . 159 ExampleData.Al2O3C . 162 ExampleData.BINfileData . 163 ExampleData.CobbleData . 165 R topics documented: 5 ExampleData.CW_OSL_Curve . 165 ExampleData.DeValues . 166 ExampleData.Fading . 167 ExampleData.FittingLM . 169 ExampleData.LxTxData . 170 ExampleData.LxTxOSLData . 171 ExampleData.portableOSL . 171 ExampleData.RLum.Analysis . 172 ExampleData.RLum.Data.Image . 173 ExampleData.ScaleGammaDose . 174 ExampleData.SurfaceExposure . 174 ExampleData.TR_OSL . 177 ExampleData.XSYG . 178 extdata . 180 extract_IrradiationTimes . 181 fit_CWCurve . 184 fit_EmissionSpectra . 188 fit_LMCurve . 191 fit_OSLLifeTimes . 196 fit_SurfaceExposure . 200 fit_ThermalQuenching . 204 get_Layout . 207 get_Quote . ..