Riverscape genetics in the endangered Mexican golden trout (Oncorhynchus chrysogaster) in Sierra Madre Occidental, Mexico Marco Alejandro Escalante Sanchez To cite this version: Marco Alejandro Escalante Sanchez. Riverscape genetics in the endangered Mexican golden trout (Oncorhynchus chrysogaster) in Sierra Madre Occidental, Mexico. Agricultural sciences. Univer- sité Montpellier; Centro de investigaciones biológicas del noroeste, S.C., 2017. English. NNT : 2017MONTT105. tel-01697876 HAL Id: tel-01697876 https://tel.archives-ouvertes.fr/tel-01697876 Submitted on 31 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ! & :0\9-&76;8&6*:-518&3-&/8),-&,-&,6+:-;8&& DE L’UNIVERSITÉ DE M 65:7-331-8& & -7&89KHKDFB?&8R:;AB=:7?&8BCC:AD9BC&)E7EPFMQBC?&7G;EK?FKHKDFB& ! 89KHB&I:9B:DGHB&/)1)& ! 37=BE&AB&NB9EBD9EB&+-.-& –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irectrice d’Étude ?&89:HB&7NGBFMAB&ABO&1GAPBO&8PAABO&& ,FN>9PNF@B&AB !PEXOB& .NG79=C9:&SGRFBN&/)8+1)&,-&3-6,?&7NFJ9=NG;&1JRBOPFDGB:N?&6BJPN:&AB&17RBOPFDG9F:7BO&4FKHXD=9GC& 6:"AFN>9P>AN&AB&PEXOB& ABH&,:N:BOPB& & 7FBNNB&+63%-86,?&,FN>9P>AN&AB&8B@EBN9JB!&1JOPFPAPB&AB&8B@EBN9JB&L:AN&HB&,WRB;:NNBJP&& 6:"AFN>9P>AN&AB&PEXOB& && & & & ! ! " " " " " " " " " " " " " ! ! ! ! "!#$%&!%! $)&! " " " " " I" " "" II" " " " " " " " (" >RYN(" PRX" HANT" .,,NI)/" X+0X" X+,1" 2,3," ,[IN" XHI)/5" mm" ORYPX:I)5" %." 70(),55" 2+%5," .03*+,3" WNRTA5" NRRM,(" RYX" %4,3" 5ROA" 0$$Y35,(" YNXI70*,"09155:" " "#""#!''()*+,-# %0#0+)#&.1-0',-/#.*#&'.)%,,#/0123 # " ! !! III" " ! !! I4" " "8ADEN(:9+:C:D-.! 3HI5"XHAWI5"2RYN("PRX"H04,"9,,P"TRWWI9N,"2!XHRYX"XHA"WYTTR3*"R."70)1"TARTN,h".VR7"9RXH"0$0(,7I$" 0)("T,35%P:N"WI(,5:"2X:VXIP/".3%7"71"0(4IWR35i"("07"3A:NN1"/30*AFYN".%3":NN"XHA"XI7,"*+,1"WTAPX"RP"7Ah" .%3"XHAI3"4:NY09N,"$RPXVI9YXIRP5"XR"71"/H#"0)(".%3":NN"XHAI3"0(4I$,"XH:X"H04,"9,,P".&)(07APX:N"RP"71" 0$0(,7I$".%370XIRP:"AN5Rh"("20)*"XR"XH:P8"XR"71"FVI,)(5".%3"9AIP/":N2015"XHAVA"IP"9RXH"/RR("0)("90(" WI*&0XIRP5B"XH:P85".R3"9AIP/">AN,9V:XIP/"2!XH"7Ai"9YX":NWR".R3"NI5*,PIP/"XR"7,"2HAP""("205"50(h"".R3" HANTIP/"7,"2+AP"("H0("(I..I$&NXI,5"0)(":N5R".%3"X:MI)/"$03,"R."71"2+,)"("H0("HA:NXH"TVR9N,75"0)("2+,)" #"5*01A@"IP"XH,"HRWTIX:N:""" %I35*" R." :NN" (" 20)*" XH:P8" XR" C30)>I5$R" 0)(" 2XCTH0)I," .%3" (I3,$XIP/" XHI5" XHAWIWh" 9YX" :NWR" .R3" :NN" XHAI3" XA0$+IP/Wh",4AP"NRP/"XI7,"9,.%3,"("5*03*,("XHI5"/H#"T3RE,$*:"/0$R"/30>I05"TR3"IP*3R(Y>I37,"AP"AN"7YP(R" (," N05" *3&$+:Wh" T,3R" *079ICP" TR3" XR(05" XYW" ,)5,F0)_05" (,5(," UY," 3,0'I$C" $%PXI/R" 7I" XAWI5" (," NI>AP>I0*&V:h"XR(R"NR"0-3,)(I(R"$%PXI/R"IP.'Y1S"(,"70),30"(AFIPIXI40"AP"UY,"1R"(A>I@I,30"IPI>I03"YP0" $033,30"AP"N0"IP4,5*I/:>ISP">IAPXJFI$0:"2XCTH0)I,"7AV>I"TRY3"XRYXA5"XA5"0**APXIRP5"(ATYI5"UY,"E,"WYI5":NNC" K"L3,)R9N,"T,)(0)X"7,5"C*&(,5"(,"705*,3"IN"1"0"WIM"0PWh"7,3>I"TRY3"*0"/APXINN,55,"7:I5"0&WWI"TRY3"*0" (IW>ITNIP,"UYI"7p0".%3$D"K"(RPP,3"N,"7AINN,&3"(,"7RIm7O7,"XRY5"N,5"ERY35"(ATYI5"UY,"Ep:I"$%77,)$C"K" *304:INN,3"04,$"XRI:"" ("07"$%7TNAXAN1"/30*,.&'"2!XH"A3XYVR"1YI_"QYP0:"L30$!05"TR3"XR(R"XY"0-R1R"1"TR3"WI,7T3,"$RPFI03"AP"7Jh" T,3%"5R93,"XR(R"/30$!05"TR3"XY"07I5*0("1"TR3",50"$0'I(0("HY70)0"UY,"XI,),5"$RP"XY5",5*Y(I0)XA5:"3R(R" NR"UY,"0-3,)(J"$%PXI/R"7,"H0"HA>HR"4,3"7I"*3090ER"(,"YP0"70),30"7R5"$3JXI$0"1"0P:NJXI>:h"T,3R"*079ICP" 7,"H0"HA>HR"7,ER303"$R7R"-,35RP0:" #"20)*"*R"XH:P8"/I,33,"SRYX,3%P:",AV>I"TRY3"*RYX"4R*3,":I(Ah"$03"50)5",'NAh"$,XX,"XHU5,"Pp0&V:IX"T05"DXC" TRWWI9N,:",AV>I"9,0&$RYT:"" ("07"/30*,.&'"2!XH"C30)?RI5"W%PHR77,"0)("/0XVI$8"W,33,9!".%3":NN"XHAI3".,,(90$85"0)("$%PXVI9YXIRP5" (YVIP/"71"XHAWI5"$R77IXX,,"7,,XIP/5:" ("07",5-A>I:NN1"/30XA.&N"2!XH",:VI,")R5D,"C%3XIP"0)("APP,"WD0*3!$,"#Y.RY3".%3"3,4I,2!)/"XHI5"XHAWI5:" 3H:P85".R3"*H,"XI7,"1RY"5-,)*"3,0(IP/"XHI5"70)Y5$VITX"0)(".%3"1RY3"4:NY09N,"$RPXVI9YXIRP5:" ,1" 0$8)%2',(/,7AP*5" XR" ".-AS83" .R3" T3R4I(IP/" XHA" 5$+RN03WHIT" XR" T,3.R37" 71" /H#" 5*&(I,5:" A((IXIRP:NN1h" XHI5" 3,5,03$+" 205" WYTTR3*,(" YP(,3" TVRE,$*5" .%YP(,(" 91" ".-AS83" n1A.:" SWmxv_vmv_m _`xabco"0)("e".2-.1#"n,_fAvfok" ,0)1" XH:P85" XR" S+03',5" /AVVI,3:" ,AV>I" TRYX" XRP" :I(," (CWIPXD3,55CAh" TRY3" XRY5" XA5" $RPWAINWh" 7:I5" WTC>I:N,7APX"TRY3"*RP"07IXICk",AV>I"S03'IXR5g" 3H:P85"XR"e3!P"Q0)(/YXH".%3"H,3"WYTTR3X"0)("0(4I$,"XH0*"2,3,"4,31"I7TR3*0)X".R3"*H,"(,4ANRT7APX"R." *+,"S+0-XA3"(("R."XHIW"XHAWI5:"" (":O",WTA>I:NN1"XH0)MFYN"2IXH",03$%"AP(VANNRk"3H:P85".R3"0'N"1RY3"0(4!$,5"2HIN,"0):N^_IP/"71"(0*05AXWh" .%3"XHI5"NRP/"FVI,)(WHIT"2,"H04Ah"9YX"AWTA>I:NN1".%3"1RY3"MIP(P,55:"3H:P8"1RY".R3"9AIP/":N2015"XHAVAh" 0)(".%V"HANTIP/"I)"50("0)("(I..I$&NX"TAVIR(5:"L30)(,",03$%f"L30GI,"7INNAf" ,1"0$8)R2',(/7APX5"XR"10.0,'"h,3)RP(A_"L&_7R)"0P("AN,E0)(VR"107J3A_"hY,3*0:"L30$!05"TR3"XR(R" 5&"0-R1R"1"03(&R"X3090ER"WIP",N"$&0'",5*,"TVR1,$XR"PR"HY9IAV:"TR@I(R"NN,4035,"0"$09R:"" 4" " 2TA>I:N" XH:P85" XR" LR3/RPIR" 1YI_" S07TR5:" L30>I05" TR3" N0" HRWTIX:NI(0(" 9VIP(0(0" $&0P(R" 4IWIXC" XY" N09R30*RVIR"1"TR3"XR(05"XYW",)5,F0)_05"UY,".&,3RP"7Y1"I7TR3*0)*,5"T030"3A:NI_03"AN"*3090ER"(,"$07TR:"" ("07"XH:PMFYN"2IXH"L enoveva Ingle, Faustino Camarena, Héctor Espinosa and all ‘’Truchas Mexicanas’’ /VRYT:" ,0)1" XH:P85" XR" W30(" 2H,T03(h" S03*,3" i3&5,<" )05RP" #YPH07h" 0)(" R*+,35" .R3" XHA" (RP0XIRP" R." 0P" AN,$*3RFIWHIP/",UYIT7APXk" Thanks to Ricardo Silvas ‘’El Chalote’’, Tomás Durán "0)(":NN"XHA"T,RTN,"2HR"HANT,("&5".%V"FIAN(2R38:"" 3H:P85" XR" L&0)0$,4J" ,YPI>IT:N" L%4,3)7APXh" /1.-A341A" 0)(" kkC" .R3" :NN" XHAI3" WYTTR3*" IP" FIAN(" 5&34,15:"" ,0)1"XH:P85"XR",:VI,"/I,33,"#Y9RI5"0)(":NN"XHA"W*0.."R."3H,",RNA>YN03",038,35"/N0*.%37"R."SeCe:" ,1"0$8)R2N,(/7,)*5"XR"ePVIUY,".VXA/0"A9RY(".%V"HIW":I("I)"/APA"RPXRNR/1"0)0'1WI5:" Super dooper thanks to ‘’The Gang’’ for making AMAP such a cool place to work. Also, all of you helped 7,"0)("5*01,("2!XH"7,"IP"(I..I$&NX"TAVIR(Wh"("H04,"PR"2%3(5"XR"XH:P8"1RY":NN:",0XHIAYh"7AV>I"TRY3"XRYX" N,"XA7T5"UY,"XY",5X"T055D"K"7pD$RYX,3"AX"0&WWI"TRY3"XRYX"XRP":I(,",X"0709INIXCi"2,"03,"PRX"5&3,"XHA3," 2!NN"9,"PRX"PI/H*5"R."XHA"2!X>H"0)17R3Ah"9YX"("MPR2"("$%YPX"2!XH"1RY"XR"MINN"XH,"2!*$H,5:")I771"7,3$I" TRY3"XRY5"$,5"9IU3,5h"XRY5"XA s conseilles et l’hospitalité de ta famille. Falafel, merci pour les apéros à >HA_"XRIh"N0"PRYVVI*&3,":WI0XIUY,"AX"WTC>I:N,7APX"*0"/30P(,"/APXINN,55,:"8R/0)"7,3>I"(pDX3,"N,"TNY5"$RRN" jamais collègue de bureau. Jérôme merci de me recevoir pendant tous mes ‘’homeless periods’’, ta /APXINN,55,"AX"*0"5RYXIAP"$RP5*0)*:"#I0),"7AV>I"TRY3"*0"HRWTIX:NIXC",X"TRY3"WRY>I,3"(,"7RI:"QYI5"1"/0XVI>I0i" /30$!05"TR3"XR(0"5&"0709INI(0(h"01&(0"1"TR3",5*03"$RP7I/R"AP"NR5"7R7APXR5"(I.J>IN,5:",AVNIPRh"7AV>I" TRY3"*0"$R7T0/PI,"(0)5" les bons et mauvais, et pour mes fleurs et cône d’anniversaire.