Pacific Salmon & Steelhead 2015-2020 Bibliography Trevor Riley, Head of Public Services, NOAA Central Library Katie Rowley, Research Librarian, NOAA Central Library Hope Shinn, Research Librarian, NOAA Central Library Jamie Roberts, Research Librarian, NOAA Central Library Erin Cheever, Research Librarian, NOAA Central Library NCRL subject guide 2020-15 https://doi.org/10.25923/7f5f-pz64 September 2020 U.S. Department of Commerce National Oceanic and Atmospheric Administration Office of Oceanic and Atmospheric Research NOAA Central Library – Silver Spring, Maryland Table of Contents Background & Scope ................................................................................................................................. 3 Sources Reviewed ..................................................................................................................................... 5 Section I: California Central Valley ............................................................................................................ 6 Section II: South-Central & Southern California Coast ........................................................................... 38 Section III: North-Central California Coast .............................................................................................. 47 Section IV: Southern Oregon & Northern California Coast ..................................................................... 76 Section V: Oregon Coast ......................................................................................................................... 88 Section VI: Upper Willamette River ...................................................................................................... 107 Section VII: Puget Sound ....................................................................................................................... 128 Section VIII: Washington Coast ............................................................................................................. 181 Section IX: Lower Columbia River ......................................................................................................... 185 Section X: Middle Columbia River ......................................................................................................... 204 Section XI: Upper Columbia River ......................................................................................................... 208 Section XII: Snake River ......................................................................................................................... 221 Section XIII: Multi Recovery Domain/Multispecies Resources ............................................................. 266 2 Background & Scope In 2019 NOAA announced 5-year reviews of 28 species listed under the Endangered Species Act. The listed species comprise 17 evolutionarily significant units of Pacific salmon (Oncorhynchus spp.) and 11 distinct population segments of steelhead (Oncorhynchus mykiss). The purpose of these reviews is to ensure the accuracy of their listing classifications. The 5-year reviews are based on the best scientific and commercial data available at the time of the reviews and this bibliography was developed in support of the Endangered Species Division of the Office of Protected Resources, National Marine Fisheries Service. The scope of literature contained in this bibliography is as follows, publication dates: 2015-2020 with select materials from the latter half of 2014; Literature types: peer reviewed journal articles, select government documents including federal, state, tribal, etc., and NGO reports. Materials including theses, select government documents such as Biological Opinions, datasets, websites, blogs, and news articles are contained in the EndNote library associated with this project, but are not included in this annotated bibliography. The bibliography is broken into thirteen sections with a focus on recovery domains and sub-domains, which cover common watershed and geographic boundaries. Literature in each section is organized alphabetically by author. Section I – California Central Valley This section contains literature relevant to the California Central Valley Recovery Domain. This Domain contains three ESA-listed salmon and steelhead species: Central Valley spring-run Chinook salmon, Sacramento River winter-run Chinook salmon, and California Central Valley steelhead. Section II – South-Central & Southern California Coast This section contains literature relevant to the South-Central/Southern California (SCSC) Recovery Domain. This Domain contains two ESA-listed salmon and steelhead species: South- Central California Coast steelhead, and Southern California Coast steelhead. Section III – North Central California Coast This section contains literature relevant to the North Central California Coast Recovery Domain. This Domain contains a five ESA-listed salmon and steelhead species: California Coastal Chinook salmon, Northern California steelhead, Central California Coast steelhead, Central California Coast coho salmon, and Southern Oregon and Northern California Coast (SONC) coho salmon. Due to the overlap with the SONC Domain, literature on the SONC coho is found in section 4. Section IV – Southern Oregon & Northern California Coast This section contains literature relevant to the Southern Oregon and Northern California Coast (SONC) Recovery Domain. This Domain contains a single ESA-listed salmon and steelhead species: Southern Oregon/Northern California Coast coho salmon. The SONC domain overlaps with the North-Central California Coast (NCCC) Recovery Domain, which covers two ESA-listed species. This section contains only literature on the SONC coho salmon. 3 Section V – Oregon Coast This section contains literature relevant to the Oregon Coast Recovery Domain. This Domain contains a single ESA-listed salmon and steelhead species: Oregon Coast coho salmon. Section VI – Upper Willamette River This section contains literature relevant to the Willamette River Recovery Sub-domain, which is one of two sub-domains comprising of the Willamette/Lower Columbia Salmon Recovery Domain. This sub-domain contains two ESA-listed salmon and steelhead species: Upper Willamette River Chinook salmon, and Upper Willamette River steelhead. Section VII – Puget Sound This section contains literature relevant to the Puget Sound Recovery Domain. This Domain contains a three ESA-listed salmon and steelhead species: Puget Sound Chinook salmon, Hood Canal Summer-run Chum salmon, and Puget Sound steelhead. Section VIII – Washington Coast This section contains literature relevant to the Washington Coast Recovery Domain. This Domain contains a single ESA-listed salmon and steelhead species: Lake Ozette Sockeye salmon. Section IX – Lower Columbia River This section contains literature relevant to the Lower Columbia River recovery sub-domain, which is one of two sub-domains comprising of the Willamette/Lower Columbia Salmon Recovery Domain. This sub-domain contains four ESA-listed salmon and steelhead species: Lower Columbia River Chinook salmon, Lower Columbia River coho salmon, Columbia River chum, and Lower Columbia River steelhead. Section X – Middle Columbia River This section contains literature relevant to the Middle Columbia River Recovery Sub-domain, which is one of three sub-domains comprising the Interior Columbia River Recovery Domain. This sub-domain contains a single ESA-listed salmon and steelhead species: Middle Columbia River steelhead. Section XI – Upper Columbia River This section contains literature relevant to the Upper Columbia River Recovery Sub-domain, which is one of three sub-domains comprising the Interior Columbia River Recovery Domain. This sub-domain contains two ESA-listed salmon and steelhead species: Upper Columbia River spring-run Chinook salmon and Upper Columbia River steelhead. 4 Section XII – Snake River This section contains literature relevant to the Snake River Recovery Sub-domain, which is one of three sub-domains comprising the Interior Columbia River Recovery Domain. This sub- domain contains four ESA-listed salmon and steelhead species: Snake River sockeye salmon, Snake River spring/summer Chinook salmon, Snake River fall-run Chinook salmon, and Snake River steelhead. Section XIII – Multispecies Resource This section is unique in its scope as it contains literature that is relevant to multiple species across multiple Recovery Domains and Sub-domains (Snake River, California Central Valley, etc.), as citations are not duplicated between sections. This sections contains literature on all 17 ESUs of Pacific salmon and 11 DPS of steelhead. Sources Reviewed The following database were used to identify sources: Clarivate Analytics’ Web of Science: Science Citation Index Expanded and Social Science Index; Lexis Advanced; ProQuest’s Science and Technology including Aquatic Science and Fisheries Abstracts; JSTOR; EBSCO’s Academic Search Complete, Environment Complete and EconLit; NOAA’s Institutional Repository; Science.gov, the Biodiversity Heritage Library, Elsevier’s Science Direct, Wiley’s Online Library, Digital Science’s Dimensions.ai, BioOne, and Google Scholar. Beyond the open and subscribed databases listed above, extensive searching of state, local, and tribal websites was conducted. Only English language materials were included. 5 Section I: California Central Valley Abadía-Cardoso, A., Brodsky, A., Cavallo, B., Arciniega, M., Garza, J. C., Hannon, J., & Pearse, D. E. (2019). Anadromy Redux? Genetic