Kelly M. Harkins Curriculum Vitae Institution address: Home address: UCSC Paleogenomics Lab 223 Wavecrest Ave Department of Anthropology Santa Cruz, CA, 95060 University of California, Santa Cruz 203-565-9614 1156 High St., Santa Cruz, CA, 95064 Email: [email protected] APPOINTMENTS 2015-2017 National Science Foundation Postdoctoral Research Fellow Department of Anthropology, Department of Biomolecular Engineering University of California, Santa Cruz 2014-2015 Postdoctoral Researcher, Department of Anthropology University of California, Santa Cruz EDUCATION 2014 Doctor of Philosophy in Anthropology, Arizona State University. 2010 Master of Arts in Anthropology, Arizona State University. 2004 Bachelor of Arts in Anthropology and Music, Skidmore College. PUBLICATIONS :: Google Scholar Citations: http://tinyurl.com/Scholar-KMH :: Accepted Harkins KM, Schwartz RS, Cartwright RA, Stone AC. “Phylogenomic Reconstruction Supports Supercontinent Origins for Leishmania”. Infection, Genetics and Evolution. In Press Guichon R, Buikstra JE, Stone AC, Harkins KM, et al. “Pre- Tuberculosis in Tierra del Fuego? Discussion of Paleopathological and Molecular Evidence”. International Journal of Paleopathology. 2015 Harkins KM, Schwartz RS, Cartwright R, Stone AC. “Phylogenomic Reconstructions Support Supercontinent Origins for Leishmania.” BioRxiv doi: http://dx.doi.org/10.1101/028969 2015 Schwartz, RS, Harkins KM, Stone AC, Cartwright R. "A Composite Genome Approach to Identify Phylogenetically Informative Data from Next-Generation Sequencing." BMC Bioinformatics 16:193 doi:10.1186/s12859-015-0632-y. 2015 Harkins KM and Stone, AC. “Ancient pathogen genomics: Insights into timing and Adaptation.” Special Issue: Ancient DNA and Human Evolution. Journal of Human Evolution 79:137-149 doi:10.1016/j.jhevol.2014.11.002 2014 Bos, KI*, Harkins KM*, Herbig A*, Coscolla M*, Weber N, Comas Iñaki, Forrest SA, Parkhill J, Bryant JM, Harris SR, Schuenemann VJ, Campbell TJ, Majander K, Wilbur AK, Guichon RA, Steadman DLS, Cook DCC, Niemann S, Behr MA, Zumarraga M, Huson D, Nieselt K, Young D, Buikstra JE, Gagneux S, Stone AC, Krause J. 2014. “Pre-Columbian Mycobacterial Genomes Reveal Seals as a Source of New World Human Tuberculosis”. Nature 514, 494-497. 2014 Harkins KM, Buikstra JE, Campbell TC, Bos KI, Krause J, Stone AC. Screening Ancient Tuberculosis with qPCR: Challenges and Opportunities. Transactions of the Royal Society B: Biological Sciences 370, no. 1660, 20130622. doi:10.1098/rstb.2013.06221471-2970 Harkins - CV 1 ENCYCLOPEDIA ENTRIES In Press Harkins KM, Ancient DNA. International Encyclopedia of Primatology. Wiley Blackwell. Hoboken: New Jersey FUNDING 2015-2017 National Science Foundation Postdoctoral Research Fellowship, $217967, Interdisciplinary Behavioral and Social Science Research, Directorate of Social, Behavioral and Economic Sciences 2013-2014 Dissertation Writing Fellowship, $15000 + tuition, School of Human Evolution and Social Change, Arizona State University 2012-2013 National Science Foundation Doctoral Dissertation Improvement Grant, $19935 2012-2013 Philanthropic Educational Organization Scholar Award, $15000 2010-2013 National Science Foundation Graduate Research Fellowship, $30000/yr + tuition 2008-2010 Jacob K. Javits Graduate Fellowship, $30000/yr + tuition 2005-2006 U.S. Fulbright Fellow, Vienna, Austria, EUR12000 2000-2004 SBC Foundation Scholarship, $14000 HONORS AND RECOGNITION 2015 Anne T. Palamountain Scholar Award, Skidmore College 2015 Outstanding Postdoctoral Presentation Award, American Association of Anthropological Genetics, 84th Annual Meeting of the AAPA, $200 2015 Atlantik-Bruecke German-American Young Leader (Nominated) 2014 College of Liberal Arts Excellence Award, Arizona State University, $250 2013 American Association of Anthropological Genetics' Outstanding Student Presentation Award, 82nd Annual Meeting of the AAPA, $200 2012 Daniel H. Morris Award, Outstanding PhD Student in Bioarchaeology School of Human Evolution and Social Change, Arizona State University 2011-2012 Graduate Research Award, School of Human Evolution and Social Change, Arizona State University, $2000 2011-2012 GPSA Graduate Research Support Award, Arizona State University, $1600 2003-2004 Palamountain Scholar, Skidmore College, $2000 2000-2003 Wilson Scholar, Skidmore College, $2005 TRAVEL AWARDS 2014 ASU Graduate and Professional Student Association, $656 2014 School of Human Evolution and Social Change, $250 2013 ASU Graduate and Professional Student Association, $950 2013 American Association of Anthropological Genetics, $300 2012 School of Human Evolution and Social Change, $200 2011 Pacific Division of American Association for the Advancement of Science, $150 2011 American Association of Anthropological Genetics, $300 2010 ASU Graduate and Professional Student Association, $690 INVITED TALKS 2015 “Ancient pathogen genomics”, Stanford Archaeology Center, Stanford, CA Harkins - CV 2" 2015 “Paleogenomic analysis of tuberculosis from the pre-Columbian New World”, EvolGenome seminar series, Stanford Center for Human Evolutionary Genomics, Stanford, CA INVITED CONFERENCE PRESENTATIONS 2013 Harkins, KM. Addressing the unresolved phylogeny of Leishmania: a next-gen and ancient DNA approach. 82nd Annual Meeting of the American Association of Physical Anthropologists, Knoxville, TN. 2011 Harkins KM. The unresolved origins of leishmaniasis: a phylogenetic perspective. 7th World Congress on Mummy Studies, 92nd annual meeting of the Association for the Advancement of Science, San Diego, CA. CAMPUS/DEPARTMENTAL TALKS 2015 “Paleogenetic Analysis of Pre-Columbian tuberculosis”, Archaeology/Physical Anthropology Lunch Talks, UCSC, Santa Cruz, CA CONFERENCE ACTIVITY 2016 Stone AC, Motti JMB, Harkins KM, Laborde PG, Valenzuela LO, Cuello Mariela, Nieves Colon, M, Buistra JE, Bravi CM, Guichón RA. Ancient DNA and isotope analyses from Misión Salesiana, Tierra del Fuego. 85th Meeting of the American Association of Physical Anthropologists, Atlanta, GA. 2015 Harkins, KM; Schwartz, R; Fehren-Schmitz, L; Cartwright, R; Stone, AC. Designing molecular diagnostics from shotgun sequencing data: a case study using Leishmania. Poster presentation: Meeting of the Society of Molecular Biology and Evolution, Vienna, Austria. 2015 Harkins KM, Bos KI, Herbig A, Coscolla M, Buikstra JE, Gagneux S, Krause J, Stone AC. Genomic analysis of pre-Columbian tuberculosis from the New World, 84th Meeting of the American Association of Physical Anthropologists, St. Louis, MO. 2014 Bos KI, Harkins KM, Stone AC, Herbig A, Gagneux S, and Krause J. A preliminary evaluation of Mycobacterium tuberculosis in the pre-contact New World using high throughput sequencing. 83rd Meeting of the American Association of Physical Anthropologists, Calgary. 2014 Harkins, KM. Paleogenetic and paleopathological evidence for leishmaniasis in the New World. Podium presentation. 83rd Meeting of the American Association of Physical Anthropologists, Calgary. 2014 Krause J, Bos KI, Herbig A, Harkins KM, Buikstra JE, Gagneux S, Stone AC. Genomic analysis of pre-contact Mycobacterium tuberculosis from the New World. Meeting of the Society for Molecular Biology and Evolution, San Juan, PR. 2013 Harkins, KM, Schwartz R, Stone AC, Cartwright R. Phylogenetic Investigation of the Origins and Evolutionary History of Leishmania. Poster presentation. Society of Molecular Biology and Evolution Annual Meeting, Chicago, IL. 2013 Guichon RA, Buikstra JE, Stone AC., Harkins KM. et al. Molecular analyzes for Tuberculosis and stable isotope analyses in the Salesian Mission Cemetery Harkins - CV 3 "Nuestra Señora de la Candelaria" Tierra del Fuego, The 5th Paleopathology Association Meeting in South America, Santa Marta, Columbia. 2013 Nieves-Colon MA, Harkins KM, Stone AC. Obstacles and results of screening ancient skeletal samples with real-time PCR. 82nd Annual Meeting of the American Association of Physical Anthropologists, Knoxville, TN. 2012 Harkins KM, Rubel MA, Pfister, LA, and Stone AC. Optimizing enrichment strategies for next-generation sequencing using ancient TB. 81st Annual Meeting of the American Association of Physical Anthropologists, Portland, OR . 2011 Stone, AC, Pfister, L, Harkins K, Campbell T, Buikstra JE, Wilbur AK. Next generation sequencing enrichment strategies for ancient tuberculosis: pitfalls and results. 80th Annual Meeting of the American Association of Physical Anthropologists, Minneapolis, MN. 2010 Wilbur AK, Harkins K, Campbell T, Buikstra JE, and Stone AC. Ancient tuberculosis before and after the Age of Exploration. International Symposium on Biomolecular Archaeology, Copenhagen. 2010 Wilbur AK, Harkins K, Campbell TS, Rubel MA, Buikstra JE, and Stone AC. DNA analyses of ancient tuberculosis. Society of Molecular Biology and Evolution meetings, Lyon, France. 2010 Harkins KM. The Bioarchaeology of Disability Identity. 75th Annual Meeting of the Society for American Archaeology, St. Louis, MO. 2009 Co-author of ten Contributed Posters, Global History of Health Project, 78th Annual Meeting of the American Association of Physical Anthropologists, Chicago, IL. 2007 Teschler-Nicola M, Harkins K, Schamal D. Multiple cases of inherited metabolic disorder (mucopolysaccharidosis) in a medieval population from Pottenbrunn, Lower Austria. 34th Annual North American Meeting of the Paleopathology Association, Philadelphia, PA. GUEST LECTURES 2015 “Molecular approaches in Biological Anthropology”, San Francisco State University (upcoming) 2015 “Differential Diagnosis in Paleopathology” and