FW662 Lecture 6 – Evidence of Density Dependence 1 Lecture 6
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Modeling Techniques
Appendix A Modeling Techniques A.1 Population Growth Models Using Differential Equations Our main goal here is to introduce a few modeling techniques we use throughout this book. We do not intend however to provide here the fundamentals on modeling, a tutorial or a review. For these, we refer to other sources (DeAngelis et al. 1992; Ford 2009; Grimm et al. 2006; Kuang 1993). This Appendix is rather a refresher as well as an example of why using different modeling techniques for one and the same problem can be beneficial to understand biological processes better. We start with the simple exponential population growth to make modeling accessible even to complete beginners. Biologists generally define a population as a collection of individuals that belong to the same species and can potentially breed with each other. One of the best-known early models on population growth was outlined by Malthus (1798). He famously maintained that the human population is predicted to grow in an exponential manner, but the crucial products needed to sustain the population grow in but a linear manner. He argued that these different types of growths will trigger disasters when the population’s needs are not satisfied. The basic exponential growth model consists of a single positive feedback loop that arises from the fact that every individual (N) is predicted to have a fixed number of offspring (r), regardless of the size of the population, and thus also regardless of the remaining resources in the habitat: dN = rN dt (A.1.1) This exponential growth model had a profound effect on biology such as developing the theory of natural selection (Darwin 1859). -
Density Dependence in Demography and Dispersal Generates Fluctuating
Density dependence in demography and dispersal generates fluctuating invasion speeds Lauren L. Sullivana,1, Bingtuan Lib, Tom E. X. Millerc, Michael G. Neubertd, and Allison K. Shawa aDepartment of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108; bDepartment of Mathematics, University of Louisville, Louisville, KY 40292; cDepartment of BioSciences, Program in Ecology and Evolutionary Biology, Rice University, Houston, TX 77005; and dBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543 Edited by Alan Hastings, University of California, Davis, CA, and approved March 30, 2017 (received for review November 23, 2016) Density dependence plays an important role in population regu- is driven by reproduction and dispersal from high-density pop- lation and is known to generate temporal fluctuations in popu- ulations behind the invasion front (13–15)]. The conventional lation density. However, the ways in which density dependence wisdom of a long-term constant invasion speed is widely applied affects spatial population processes, such as species invasions, (16, 17). are less understood. Although classical ecological theory suggests In contrast to classic approaches that emphasize a long-term that invasions should advance at a constant speed, empirical work constant speed, there is growing empirical recognition that inva- is illuminating the highly variable nature of biological invasions, sion dynamics can be highly variable and idiosyncratic (18–25). which often exhibit nonconstant spreading speeds, even in sim- There are several theoretical explanations for fluctuations in ple, controlled settings. Here, we explore endogenous density invasion speed (which we define here as any persistent tem- dependence as a mechanism for inducing variability in biologi- poral variability in spreading speed), including stochasticity in cal invasions with a set of population models that incorporate either demography or dispersal (24–28) and temporal or spatial density dependence in demographic and dispersal parameters. -
Plant Diversity Increases with the Strength of Negative Density Dependence at the Global Scale
RESEARCH FOREST ECOLOGY predators, pathogens, or herbivores) and/or com- petition for space and resources (2–4, 7). Numer- ous studies have documented the existence of CNDD in one or several plant species (8–12), and Plant diversity increases with the most of these studies explicitly or implicitly as- sume that stronger CNDD maintains higher spe- strength of negative density cies diversity in communities. However, only a handful of studies have explicitly examined dependence at the global scale the link between CNDD and species diversity (4, 11, 13, 14),andnostudyhasexaminedthis relationship across temperate and tropical lat- Joseph A. LaManna,1,2* Scott A. Mangan,2 Alfonso Alonso,3 Norman A. Bourg,4,5 itudes. Despite decades of study, our understand- Warren Y. Brockelman,6,7 Sarayudh Bunyavejchewin,8 Li-Wan Chang,9 ing of how processes at local scales—such as Jyh-Min Chiang,10 George B. Chuyong,11 Keith Clay,12 Richard Condit,13 density-dependent biotic interactions—influence Susan Cordell,14 Stuart J. Davies,15,16 Tucker J. Furniss,17 Christian P. Giardina,14 18 18 19,20 global patterns of biodiversity remains in flux I. A. U. Nimal Gunatilleke, C. V. Savitri Gunatilleke, Fangliang He, 1 15 21 22 23 ( , ). Robert W. Howe, Stephen P. Hubbell, Chang-Fu Hsieh, Both species-specific and more generalized 14 24 25 15,16 Faith M. Inman-Narahari, David Janík, Daniel J. Johnson, David Kenfack, mechanisms can cause CNDD, but only CNDD 3 24 26 17 Lisa Korte, Kamil Král, Andrew J. Larson, James A. Lutz, caused by species-specific mechanisms can main- 27,28 4 29 Sean M. -
"Density Dependence and Independence"
Density Dependence and Advanced article Independence Article Contents . Introduction: Concepts and Importance in Ecology Mark A Hixon, Oregon State University, Corvallis, Oregon, USA . Mechanisms of Density Dependence . Old Debates Resolved Darren W Johnson, Oregon State University, Corvallis, Oregon, USA . Detecting Density Dependence . Future Directions Online posting date: 15th December 2009 Density dependence occurs when the population growth parameter of interest involves population dynamics, rate, or constituent gain rates (e.g. birth and immi- including the population growth rate and the four primary gration) or loss rates (death and emigration), vary caus- demographic (or vital) rates – birth, death, immigration ally with population size or density (N). When these and emigration – although related parameters, such as growth and fecundity, are also investigated. See also: parameters do not vary with N, they are density-inde- Population Dynamics: Introduction pendent. Direct density dependence, where the popu- Use of the words ‘density dependence’ alone normally lation growth rate or gain rates vary as a negative means ‘direct density dependence’ (or compensation): the function of N, or the loss rates vary as a positive function of per capita (proportional) gain rate (population or indi- N, is necessary but not always sufficient for population vidual growth, fecundity, birth or immigration) decreases regulation. The opposite patterns, inverse density as N increases (Figure 1a) or the loss rate (death and/or dependence or the Allee effect, may push endangered emigration) increases as N increases (Figure 1b). The populations towards extinction. Direct density depend- opposite patterns are called inverse density dependence (or ence is caused by competition, and at times, predation. -
The Ecogenetic Link Between Demography and Evolution: Can We Bridge the Gap Between Theory and Data?
Ecology Letters, (2007) 10: 773–782 doi: 10.1111/j.1461-0248.2007.01086.x IDEA AND PERPSECTIVE The ecogenetic link between demography and evolution: can we bridge the gap between theory and data? Abstract Hanna Kokko1,2* and Andre´ s Calls to understand the links between ecology and evolution have been common for Lo´ pez-Sepulcre1,3,4 decades. Population dynamics, i.e. the demographic changes in populations, arise from 1Laboratory of Ecological and life history decisions of individuals and thus are a product of selection, and selection, on Evolutionary Dynamics, the contrary, can be modified by such dynamical properties of the population as density Department of Biological and and stability. It follows that generating predictions and testing them correctly requires Environmental Science, considering this ecogenetic feedback loop whenever traits have demographic conse- University of Helsinki, Helsinki, quences, mediated via density dependence (or frequency dependence). This is not an Finland 2 easy challenge, and arguably theory has advanced at a greater pace than empirical School of Botany and Zoology, Australian National University, research. However, theory would benefit from more interaction between related fields, as Canberra, Australia is evident in the many near-synonymous names that the ecogenetic loop has attracted. 3Evolutionary Ecology Unit, We also list encouraging examples where empiricists have shown feasible ways of Department of Biological and addressing the question, ranging from advanced data analysis to experiments and Environmental Sciences, comparative analyses of phylogenetic data. University of Jyva¨ skyla¨ , Jyva¨ skyla¨ , Finland Keywords 4 Department of Biology, Comparative analysis, density-dependent selection, eco-evolutionary feedback, ecoge- University of California, netics, experimental evolution, frequency-dependent selection, life-history theory. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
STAGE STRUCTURE, DENSITY DEPENDENCE and the EFFICACY of MARINE RESERVES Colette M. St. Mary, Craig W. Osenberg, Thomas K. Frazer
BULLETIN OF MARINE SCIENCE, 66(3): 675–690, 2000 STAGE STRUCTURE, DENSITY DEPENDENCE AND THE EFFICACY OF MARINE RESERVES Colette M. St. Mary, Craig W. Osenberg, Thomas K. Frazer and William J. Lindberg ABSTRACT The habitat requirements of fishes and other marine organisms often change with on- togeny, so many harvested species exhibit such extreme large-scale spatial segregation between life stages that all life stages cannot be protected within a single marine reserve. Nevertheless, most discussions of marine reserves have focused narrowly on single life- history events (e.g., reproduction or settlement) or a single life stage (e.g., adult or re- cruit). Instead, we hypothesize that an effective marine reserve system should often in- clude a diversity of protected habitats, each appropriate to a different life stage. In such a case, the spatial configuration of habitats within reserves, and of separate reserves across larger spatial scales, may affect how marine resources respond to reserve design. We explored these issues by developing a mathematical model of a fish population consist- ing of two benthic life stages (juvenile and adult) that use spatially distinct habitats and examined the population’s response to various management scenarios. Specifically, we varied the sizes of reserves protecting the two life stages and the degree of coupling between juvenile and adult reserves (i.e., the fraction of the protected juvenile stock that migrates into the adult reserve upon maturation). We examined the effects when density dependence operated in only the juvenile stage, only the adult stage, or both. The results demonstrated that population stage structure and the nature of density dependence should be incorporated into the design of marine reserves but did not provide robust support for the general tenet that all life stages must be protected for an effective reserve system. -
DENSITY DEPENDENCE, the LOGISTIC EQUATION, and R- AUD
89 DENSITY DEPENDENCE,THE LOGISTIC EQUATION, AND r- AUD K-SELECTION: A CRITIQUE AI{D AN AJ,TERNATIVEAPPROACH Jan Kozlowski Department of Animal Ecology Jagiellonlan University Karasia 6 30-060 Krak6w, POLAND Received September 18,1978; July 9, 1980 ABSTRACT: The logistic equation is a starting point of many ecological theories. Most ecologists agree that this equation is usually not conslstent Iillth observations and experlmental results but it ls argued that the slmpllclty of fhis equatlon ls the reason for this lnconsistency. In this paper I attempt to prove that the reason for inadequacy of the logistic equation l-s more fundamental: most systems qf equa- tions descrlbing the dynamlcs of population and lts resources cannot be transformed to the single equatlon for limited growth. Even if thls transformation is posslble' the K parameter depends on components of !r usually on the ratLo of mortallty rate to reproduction rate. Thls fact ls commonly overlooked because it ls assuned that denslty affects the abstract term r (popul-atlon growth rate). Because of doubts as to density-dependence and the logistlc equation, the r- and K-selectlon concept is criticLzed, both as a classiflcation system and as a predlctlve theory. It ls shown that when resources are explicltly consldered, it ls possible to prediet traits favored by natural- selectLon on a given resource level dlrectly from the descrlptlon of the system. This approach seems to be more advan- tageous than the r- and K-selection concept. I. INTRODUCTION Ttre logistic equation is a mathematical formulation of the denslty-dependent facEors concept. Though density-dependence may no longer be a burning issue lt ls dlfflcult to flnd a contemporary ecology textbook that does not contaln the loglstlc equation. -
The Effect of Habitat Fragmentation on Cyclic Population Dynamics: a Numerical Study
Bulletin of Mathematical Biology (2009) 71: 1323–1348 DOI 10.1007/s11538-009-9403-0 ORIGINAL ARTICLE The Effect of Habitat Fragmentation on Cyclic Population Dynamics: A Numerical Study S. Strohm, R. Tyson∗ University of British Columbia Okanagan, Kelowna, Canada Received: 29 May 2008 / Accepted: 21 January 2009 / Published online: 8 April 2009 © Society for Mathematical Biology 2009 Abstract Through four spatially explicit models, we investigate how habitat fragmenta- tion affects cyclic predator–prey population dynamics. We use a Partial Differential Equa- tion (PDE) framework to describe the dispersal of predators and prey in a heterogeneous landscape made of high quality and low quality habitat patches, subject to increasing fragmentation through habitat separation and/or habitat loss. Our results show that habitat fragmentation decreases the amplitude of the predator–prey population cycles while aver- age population density is not as strongly affected in general. Beyond these simple trends however, the four models show differing responses to fragmentation, indicating that when making predictions about population survival and persistence in the face of habitat frag- mentation, the choice of model is important. Our results may inform conservation efforts in fragmented habitats for cyclic species such as the snowshoe hare and Canada lynx. Keywords Population dynamics · Population cycles · Spatial ecology · Mathematical model · Partial differential equation · Canada lynx and snowshoe hare · Fragmentation · Habitat separation · Habitat -
Drechslerella Stenobrocha Genome Illustrates the Mechanism Of
Liu et al. BMC Genomics 2014, 15:114 http://www.biomedcentral.com/1471-2164/15/114 RESEARCH ARTICLE Open Access Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi Keke Liu1,2†, Weiwei Zhang1,2†, Yiling Lai1,2, Meichun Xiang1, Xiuna Wang1, Xinyu Zhang1 and Xingzhong Liu1* Abstract Background: Nematode-trapping fungi are a unique group of organisms that can capture nematodes using sophisticated trapping structures. The genome of Drechslerella stenobrocha, a constricting-ring-forming fungus, has been sequenced and reported, and provided new insights into the evolutionary origins of nematode predation in fungi, the trapping mechanisms, and the dual lifestyles of saprophagy and predation. Results: The genome of the fungus Drechslerella stenobrocha, which mechanically traps nematodes using a constricting ring, was sequenced. The genome was 29.02 Mb in size and was found rare instances of transposons and repeat induced point mutations, than that of Arthrobotrys oligospora. The functional proteins involved in nematode-infection, such as chitinases, subtilisins, and adhesive proteins, underwent a significant expansion in the A. oligospora genome, while there were fewer lectin genes that mediate fungus-nematode recognition in the D. stenobrocha genome. The carbohydrate-degrading enzyme catalogs in both species were similar to those of efficient cellulolytic fungi, suggesting a saprophytic origin of nematode-trapping fungi. In D. stenobrocha, the down-regulation of saprophytic enzyme genes and the up-regulation of infection-related genes during the capture of nematodes indicated a transition between dual life strategies of saprophagy and predation. The transcriptional profiles also indicated that trap formation was related to the protein kinase C (PKC) signal pathway and regulated by Zn(2)–C6 type transcription factors. -
Counterintuitive Density-Dependent Growth in a Long-Lived Vertebrate After Removal of Nest Predators Ricky-John Spencer Iowa State University
CORE Metadata, citation and similar papers at core.ac.uk Provided by Digital Repository @ Iowa State University Ecology, Evolution and Organismal Biology Ecology, Evolution and Organismal Biology Publications 12-2006 Counterintuitive density-dependent growth in a long-lived vertebrate after removal of nest predators Ricky-John Spencer Iowa State University Fredric J. Janzen Iowa State University, [email protected] Michael B. Thompson University of Sydney Follow this and additional works at: http://lib.dr.iastate.edu/eeob_ag_pubs Part of the Evolution Commons, and the Population Biology Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ eeob_ag_pubs/151. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Ecology, Evolution and Organismal Biology at Iowa State University Digital Repository. It has been accepted for inclusion in Ecology, Evolution and Organismal Biology Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Counterintuitive density-dependent growth in a long-lived vertebrate after removal of nest predators Abstract Examining the phenotypic and genetic underpinnings of life-history variation in long-lived organisms is central to the study of life-history evolution. Juvenile growth and survival are often density dependent in reptiles, and theory predicts the evolution of slow growth in response to low resources (resource-limiting hypothesis), such as under densely populated conditions. However, rapid growth is predicted when exceeding some critical body size reduces the risk of mortality (mortality hypothesis). -
Charles Elton's Legacy in Population Ecology Lindström
From arctic lemmings to adaptive dynamics: Charles Elton's legacy in population ecology Lindström, Jan; Ranta, Esa; Kokko, Hanna; Lundberg, Per; Kaitala, Veijo Published in: Biological Reviews DOI: 10.1017/S1464793100005637 2001 Link to publication Citation for published version (APA): Lindström, J., Ranta, E., Kokko, H., Lundberg, P., & Kaitala, V. (2001). From arctic lemmings to adaptive dynamics: Charles Elton's legacy in population ecology. Biological Reviews, 76(1), 129-158. https://doi.org/10.1017/S1464793100005637 Total number of authors: 5 General rights Unless other specific re-use rights are stated the following general rights apply: Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal Read more about Creative commons licenses: https://creativecommons.org/licenses/ Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. LUND UNIVERSITY PO Box 117 221 00 Lund +46 46-222 00 00 Biol. Rev. (2001), 76, pp. 129–158 Printed in the United Kingdom # Cambridge Philosophical Society 129 From arctic lemmings to adaptive dynamics: Charles Elton’s legacy in population ecology JAN LINDSTRO$ M"*, ESA RANTA#, HANNA KOKKO"*, PER LUNDBERG$ and VEIJO KAITALA#,% " Department of Zoology, University of Cambridge, Downing Street, Cambridge CB23EJ, UK # Integrative Ecology Unit, Department of Ecology and Systematics, Division of Population Biology, P.O.