The Adaptive Spelling Error Checking Algorithm Based on Trie Tree Yongbing Xu , Junyi Wang
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Application of TRIE Data Structure and Corresponding Associative Algorithms for Process Optimization in GRID Environment
Application of TRIE data structure and corresponding associative algorithms for process optimization in GRID environment V. V. Kashanskya, I. L. Kaftannikovb South Ural State University (National Research University), 76, Lenin prospekt, Chelyabinsk, 454080, Russia E-mail: a [email protected], b [email protected] Growing interest around different BOINC powered projects made volunteer GRID model widely used last years, arranging lots of computational resources in different environments. There are many revealed problems of Big Data and horizontally scalable multiuser systems. This paper provides an analysis of TRIE data structure and possibilities of its application in contemporary volunteer GRID networks, including routing (L3 OSI) and spe- cialized key-value storage engine (L7 OSI). The main goal is to show how TRIE mechanisms can influence de- livery process of the corresponding GRID environment resources and services at different layers of networking abstraction. The relevance of the optimization topic is ensured by the fact that with increasing data flow intensi- ty, the latency of the various linear algorithm based subsystems as well increases. This leads to the general ef- fects, such as unacceptably high transmission time and processing instability. Logically paper can be divided into three parts with summary. The first part provides definition of TRIE and asymptotic estimates of corresponding algorithms (searching, deletion, insertion). The second part is devoted to the problem of routing time reduction by applying TRIE data structure. In particular, we analyze Cisco IOS switching services based on Bitwise TRIE and 256 way TRIE data structures. The third part contains general BOINC architecture review and recommenda- tions for highly-loaded projects. -
KP-Trie Algorithm for Update and Search Operations
The International Arab Journal of Information Technology, Vol. 13, No. 6, November 2016 722 KP-Trie Algorithm for Update and Search Operations Feras Hanandeh1, Izzat Alsmadi2, Mohammed Akour3, and Essam Al Daoud4 1Department of Computer Information Systems, Hashemite University, Jordan 2, 3Department of Computer Information Systems, Yarmouk University, Jordan 4Computer Science Department, Zarqa University, Jordan Abstract: Radix-Tree is a space optimized data structure that performs data compression by means of cluster nodes that share the same branch. Each node with only one child is merged with its child and is considered as space optimized. Nevertheless, it can’t be considered as speed optimized because the root is associated with the empty string. Moreover, values are not normally associated with every node; they are associated only with leaves and some inner nodes that correspond to keys of interest. Therefore, it takes time in moving bit by bit to reach the desired word. In this paper we propose the KP-Trie which is consider as speed and space optimized data structure that is resulted from both horizontal and vertical compression. Keywords: Trie, radix tree, data structure, branch factor, indexing, tree structure, information retrieval. Received January 14, 2015; accepted March 23, 2015; Published online December 23, 2015 1. Introduction the exception of leaf nodes, nodes in the trie work merely as pointers to words. Data structures are a specialized format for efficient A trie, also called digital tree, is an ordered multi- organizing, retrieving, saving and storing data. It’s way tree data structure that is useful to store an efficient with large amount of data such as: Large data associative array where the keys are usually strings, bases. -
Lecture 26 Fall 2019 Instructors: B&S Administrative Details
CSCI 136 Data Structures & Advanced Programming Lecture 26 Fall 2019 Instructors: B&S Administrative Details • Lab 9: Super Lexicon is online • Partners are permitted this week! • Please fill out the form by tonight at midnight • Lab 6 back 2 2 Today • Lab 9 • Efficient Binary search trees (Ch 14) • AVL Trees • Height is O(log n), so all operations are O(log n) • Red-Black Trees • Different height-balancing idea: height is O(log n) • All operations are O(log n) 3 2 Implementing the Lexicon as a trie There are several different data structures you could use to implement a lexicon— a sorted array, a linked list, a binary search tree, a hashtable, and many others. Each of these offers tradeoffs between the speed of word and prefix lookup, amount of memory required to store the data structure, the ease of writing and debugging the code, performance of add/remove, and so on. The implementation we will use is a special kind of tree called a trie (pronounced "try"), designed for just this purpose. A trie is a letter-tree that efficiently stores strings. A node in a trie represents a letter. A path through the trie traces out a sequence ofLab letters that9 represent : Lexicon a prefix or word in the lexicon. Instead of just two children as in a binary tree, each trie node has potentially 26 child pointers (one for each letter of the alphabet). Whereas searching a binary search tree eliminates half the words with a left or right turn, a search in a trie follows the child pointer for the next letter, which narrows the search• Goal: to just words Build starting a datawith that structure letter. -
The One-Way Communication Complexity of Hamming Distance
THEORY OF COMPUTING, Volume 4 (2008), pp. 129–135 http://theoryofcomputing.org The One-Way Communication Complexity of Hamming Distance T. S. Jayram Ravi Kumar∗ D. Sivakumar∗ Received: January 23, 2008; revised: September 12, 2008; published: October 11, 2008. Abstract: Consider the following version of the Hamming distance problem for ±1 vec- n √ n √ tors of length n: the promise is that the distance is either at least 2 + n or at most 2 − n, and the goal is to find out which of these two cases occurs. Woodruff (Proc. ACM-SIAM Symposium on Discrete Algorithms, 2004) gave a linear lower bound for the randomized one-way communication complexity of this problem. In this note we give a simple proof of this result. Our proof uses a simple reduction from the indexing problem and avoids the VC-dimension arguments used in the previous paper. As shown by Woodruff (loc. cit.), this implies an Ω(1/ε2)-space lower bound for approximating frequency moments within a factor 1 + ε in the data stream model. ACM Classification: F.2.2 AMS Classification: 68Q25 Key words and phrases: One-way communication complexity, indexing, Hamming distance 1 Introduction The Hamming distance H(x,y) between two vectors x and y is defined to be the number of positions i such that xi 6= yi. Let GapHD denote the following promise problem: the input consists of ±1 vectors n √ n √ x and y of length n, together with the promise that either H(x,y) ≤ 2 − n or H(x,y) ≥ 2 + n, and the goal is to find out which of these two cases occurs. -
Fault Tolerant Computing CS 530 Information Redundancy: Coding Theory
Fault Tolerant Computing CS 530 Information redundancy: Coding theory Yashwant K. Malaiya Colorado State University April 3, 2018 1 Information redundancy: Outline • Using a parity bit • Codes & code words • Hamming distance . Error detection capability . Error correction capability • Parity check codes and ECC systems • Cyclic codes . Polynomial division and LFSRs 4/3/2018 Fault Tolerant Computing ©YKM 2 Redundancy at the Bit level • Errors can bits to be flipped during transmission or storage. • An extra parity bit can detect if a bit in the word has flipped. • Some errors an be corrected if there is enough redundancy such that the correct word can be guessed. • Tukey: “bit” 1948 • Hamming codes: 1950s • Teletype, ASCII: 1960: 7+1 Parity bit • Codes are widely used. 304,805 letters in the Torah Redundancy at the Bit level Even/odd parity (1) • Errors can bits to be flipped during transmission/storage. • Even/odd parity: . is basic method for detecting if one bit (or an odd number of bits) has been switched by accident. • Odd parity: . The number of 1-bit must add up to an odd number • Even parity: . The number of 1-bit must add up to an even number Even/odd parity (2) • The it is known which parity it is being used. • If it uses an even parity: . If the number of of 1-bit add up to an odd number then it knows there was an error: • If it uses an odd: . If the number of of 1-bit add up to an even number then it knows there was an error: • However, If an even number of 1-bit is flipped the parity will still be the same. -
Sequence Distance Embeddings
Sequence Distance Embeddings by Graham Cormode Thesis Submitted to the University of Warwick for the degree of Doctor of Philosophy Computer Science January 2003 Contents List of Figures vi Acknowledgments viii Declarations ix Abstract xi Abbreviations xii Chapter 1 Starting 1 1.1 Sequence Distances . ....................................... 2 1.1.1 Metrics ............................................ 3 1.1.2 Editing Distances ...................................... 3 1.1.3 Embeddings . ....................................... 3 1.2 Sets and Vectors ........................................... 4 1.2.1 Set Difference and Set Union . .............................. 4 1.2.2 Symmetric Difference . .................................. 5 1.2.3 Intersection Size ...................................... 5 1.2.4 Vector Norms . ....................................... 5 1.3 Permutations ............................................ 6 1.3.1 Reversal Distance ...................................... 7 1.3.2 Transposition Distance . .................................. 7 1.3.3 Swap Distance ....................................... 8 1.3.4 Permutation Edit Distance . .............................. 8 1.3.5 Reversals, Indels, Transpositions, Edits (RITE) . .................... 9 1.4 Strings ................................................ 9 1.4.1 Hamming Distance . .................................. 10 1.4.2 Edit Distance . ....................................... 10 1.4.3 Block Edit Distances . .................................. 11 1.5 Sequence Distance Problems . ................................. -
Dictionary Look-Up Within Small Edit Distance
Dictionary Lo okUp Within Small Edit Distance Ab dullah N Arslan and Omer Egeciog lu Department of Computer Science University of California Santa Barbara Santa Barbara CA USA farslanomergcsucsbedu Abstract Let W b e a dictionary consisting of n binary strings of length m each represented as a trie The usual dquery asks if there exists a string in W within Hamming distance d of a given binary query string q We present an algorithm to determine if there is a memb er in W within edit distance d of a given query string q of length m The metho d d+1 takes time O dm in the RAM mo del indep endent of n and requires O dm additional space Intro duction Let W b e a dictionary consisting of n binary strings of length m each A dquery asks if there exists a string in W within Hamming distance d of a given binary query string q Algorithms for answering dqueries eciently has b een a topic of interest for some time and have also b een studied as the approximate query and the approximate query retrieval problems in the literature The problem was originally p osed by Minsky and Pap ert in in which they asked if there is a data structure that supp orts fast dqueries The cases of small d and large d for this problem seem to require dierent techniques for their solutions The case when d is small was studied by Yao and Yao Dolev et al and Greene et al have made some progress when d is relatively large There are ecient algorithms only when d prop osed by Bro dal and Venkadesh Yao and Yao and Bro dal and Gasieniec The small d case has applications -
Efficient In-Memory Indexing with Generalized Prefix Trees
Efficient In-Memory Indexing with Generalized Prefix Trees Matthias Boehm, Benjamin Schlegel, Peter Benjamin Volk, Ulrike Fischer, Dirk Habich, Wolfgang Lehner TU Dresden; Database Technology Group; Dresden, Germany Abstract: Efficient data structures for in-memory indexing gain in importance due to (1) the exponentially increasing amount of data, (2) the growing main-memory capac- ity, and (3) the gap between main-memory and CPU speed. In consequence, there are high performance demands for in-memory data structures. Such index structures are used—with minor changes—as primary or secondary indices in almost every DBMS. Typically, tree-based or hash-based structures are used, while structures based on prefix-trees (tries) are neglected in this context. For tree-based and hash-based struc- tures, the major disadvantages are inherently caused by the need for reorganization and key comparisons. In contrast, the major disadvantage of trie-based structures in terms of high memory consumption (created and accessed nodes) could be improved. In this paper, we argue for reconsidering prefix trees as in-memory index structures and we present the generalized trie, which is a prefix tree with variable prefix length for indexing arbitrary data types of fixed or variable length. The variable prefix length enables the adjustment of the trie height and its memory consumption. Further, we introduce concepts for reducing the number of created and accessed trie levels. This trie is order-preserving and has deterministic trie paths for keys, and hence, it does not require any dynamic reorganization or key comparisons. Finally, the generalized trie yields improvements compared to existing in-memory index structures, especially for skewed data. -
Approximate String Matching with Reduced Alphabet
Approximate String Matching with Reduced Alphabet Leena Salmela1 and Jorma Tarhio2 1 University of Helsinki, Department of Computer Science [email protected] 2 Aalto University Deptartment of Computer Science and Engineering [email protected] Abstract. We present a method to speed up approximate string match- ing by mapping the factual alphabet to a smaller alphabet. We apply the alphabet reduction scheme to a tuned version of the approximate Boyer– Moore algorithm utilizing the Four-Russians technique. Our experiments show that the alphabet reduction makes the algorithm faster. Especially in the k-mismatch case, the new variation is faster than earlier algorithms for English data with small values of k. 1 Introduction The approximate string matching problem is defined as follows. We have a pat- tern P [1...m]ofm characters drawn from an alphabet Σ of size σ,atextT [1...n] of n characters over the same alphabet, and an integer k. We need to find all such positions i of the text that the distance between the pattern and a sub- string of the text ending at that position is at most k.Inthek-difference problem the distance between two strings is the standard edit distance where substitu- tions, deletions, and insertions are allowed. The k-mismatch problem is a more restricted one using the Hamming distance where only substitutions are allowed. Among the most cited papers on approximate string matching are the classical articles [1,2] by Esko Ukkonen. Besides them he has studied this topic extensively [3,4,5,6,7,8,9,10,11]. -
Searching All Seeds of Strings with Hamming Distance Using Finite Automata
Proceedings of the International MultiConference of Engineers and Computer Scientists 2009 Vol I IMECS 2009, March 18 - 20, 2009, Hong Kong Searching All Seeds of Strings with Hamming Distance using Finite Automata Ondřej Guth, Bořivoj Melichar ∗ Abstract—Seed is a type of a regularity of strings. Finite automata provide common formalism for many al- A restricted approximate seed w of string T is a fac- gorithms in the area of text processing (stringology), in- tor of T such that w covers a superstring of T under volving forward exact and approximate pattern match- some distance rule. In this paper, the problem of all ing and searching for borders, periods, and repetitions restricted seeds with the smallest Hamming distance [7], backward pattern matching [8], pattern matching in is studied and a polynomial time and space algorithm a compressed text [9], the longest common subsequence for solving the problem is presented. It searches for [10], exact and approximate 2D pattern matching [11], all restricted approximate seeds of a string with given limited approximation using Hamming distance and and already mentioned computing approximate covers it computes the smallest distance for each found seed. [5, 6] and exact covers [12] and seeds [2] in generalized The solution is based on a finite (suffix) automata ap- strings. Therefore, we would like to further extend the set proach that provides a straightforward way to design of problems solved using finite automata. Such a problem algorithms to many problems in stringology. There- is studied in this paper. fore, it is shown that the set of problems solvable using finite automata includes the one studied in this Finite automaton as a data structure may be easily imple- paper. -
Approximate Boyer-Moore String Matching
APPROXIMATE BOYER-MOORE STRING MATCHING JORMA TARHIO AND ESKO UKKONEN University of Helsinki, Department of Computer Science Teollisuuskatu 23, SF-00510 Helsinki, Finland Draft Abstract. The Boyer-Moore idea applied in exact string matching is generalized to approximate string matching. Two versions of the problem are considered. The k mismatches problem is to find all approximate occurrences of a pattern string (length m) in a text string (length n) with at most k mis- matches. Our generalized Boyer-Moore algorithm is shown (under a mild 1 independence assumption) to solve the problem in expected time O(kn( + m – k k)) where c is the size of the alphabet. A related algorithm is developed for the c k differences problem where the task is to find all approximate occurrences of a pattern in a text with ≤ k differences (insertions, deletions, changes). Experimental evaluation of the algorithms is reported showing that the new algorithms are often significantly faster than the old ones. Both algorithms are functionally equivalent with the Horspool version of the Boyer-Moore algorithm when k = 0. Key words: String matching, edit distance, Boyer-Moore algorithm, k mismatches problem, k differences problem AMS (MOS) subject classifications: 68C05, 68C25, 68H05 Abbreviated title: Approximate Boyer-Moore Matching 2 1. Introduction The fastest known exact string matching algorithms are based on the Boyer- Moore idea [BoM77, KMP77]. Such algorithms are “sublinear” on the average in the sense that it is not necessary to check every symbol in the text. The larger is the alphabet and the longer is the pattern, the faster the algorithm works. -
B-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches Shunsuke Kanda Yasuo Tabei RIKEN Center for Advanced Intelligence Project RIKEN Center for Advanced Intelligence Project Tokyo, Japan Tokyo, Japan [email protected] [email protected] Abstract—Recently, randomly mapping vectorial data to algorithms intending to build sketches of non-negative inte- strings of discrete symbols (i.e., sketches) for fast and space- gers (i.e., b-bit sketches) have been proposed for efficiently efficient similarity searches has become popular. Such random approximating various similarity measures. Examples are b-bit mapping is called similarity-preserving hashing and approximates a similarity metric by using the Hamming distance. Although minwise hashing (minhash) [12]–[14] for Jaccard similarity, many efficient similarity searches have been proposed, most of 0-bit consistent weighted sampling (CWS) for min-max ker- them are designed for binary sketches. Similarity searches on nel [15], and 0-bit CWS for generalized min-max kernel [16]. integer sketches are in their infancy. In this paper, we present Thus, developing scalable similarity search methods for b-bit a novel space-efficient trie named b-bit sketch trie on integer sketches is a key issue in large-scale applications of similarity sketches for scalable similarity searches by leveraging the idea behind succinct data structures (i.e., space-efficient data structures search. while supporting various data operations in the compressed Similarity searches on binary sketches are classified