Arthropod Embryogenesis
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Interactions of the Drosophila Gap Gene Giant with Maternal and Zygotic Pattern-Forming Genes
Development 111, 367-378 (1991) 367 Printed in Great Britain © The Company of Biologists Limited 1991 Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes ELIZABETH D. ELDON* and VINCENZO PIRROTTA Department of Cell Biology, Baylor College of Medicine, Texas Medical Center, Houston, TX 77030, USA 'Present address: Howard Hughes Medical Institute and Institute of Molecular Genetics, Baylor College of Medicine, Texas Medical Center, Houston, TX 77030, USA Summary The Drosophila gene giant (gt) is a segmentation gene other gap genes. These interactions, typical of the cross- that affects anterior head structures and abdominal regulation previously observed among gap genes, segments A5-A7. Immunolocalization of the gt product confirm that gt is a member of the gap gene class whose shows that it is a nuclear protein whose expression is function is necessary to establish the overall pattern of initially activated in an anterior and a posterior domain. gap gene expression. After cellular blastoderm, gt Activation of the anterior domain is dependent on the protein continues to be expressed in the head region in maternal bicoid gradient while activation of the posterior parts of the maxillary and mandibular segments as well domain requires maternal nanos gene product. Initial as in the labrum. Expression is never detected in the expression is not abolished by mutations in any of the labial or thoracic segment primordia but persists in zygotic gap genes. By cellular blastoderm, the initial certain head structures, including the ring gland, until pattern of expression has evolved into one posterior and the end of embryonic development. -
Drosophila: the Genetics of Segmentation (WR Lecture 2)
Drosophila: the genetics of segmentation (WR lecture 2) In the previous lecture we covered the Drosophila life cycle from developing oocyte to the newly-cellularized blastoderm. At this stage (left), the embryo is shaped like a slightly bent rugby ball with about 6000 cells distributed around the surface. There are very few recognizable surface or internal features, but the future body plan is already mapped out through the expression of a set of genes known as the segmentation genes. This expression pattern - which defines a series of 15 stripes around the embryo - is a "molecular blueprint" that specifies the larval and adult segments. In this lecture we learn about the molecular events that subdivide the embryo into stripes (known as parasegments in the embryo). The key players in this process were identified during a genetic screen that was carried out by Christiane Nusslein-Volhart, Eric Wieschaus and their collaborators. Their groundbreaking effort was rewarded in 1995 by the award of the Nobel prize in Physiology and Medicine, which they shared with Ed Lewis for his work on homeotic mutants (next lecture). All animals, whether flies or humans, are constructed according to a fundamental repeated pattern so this work in Drosophila lays the foundation for understanding development of all animals. 1. Three sets of maternal effect genes define the anterior-posterior axis. These are the anterior group, the posterior group and the terminal group genes (the latter determine structures at the extreme front and back ends of the fly - the telson at the back and the acron at the front). The main player in the anterior group is bicoid, mRNA for which is localized at the anterior end of the oocyte and is translated into protein (a homeodomain transcription factor) that diffuses posteriorly to set up an anterior-posterior (high-low) concentration gradient. -
Annotated Classic Protein Control of Pattern Formation
Annotated Classic Protein Control of Pattern Formation James Briscoe1,* 1Developmental Biology, National Institute for Medical Research, Mill Hill, London NW7 1AA, UK *Correspondence: [email protected] We are pleased to present a series of Annotated Classics celebrating 40 years of exciting biology in the pages of Cell. This installment revisits “The bicoid Protein Determines Position in the Drosophila Embryo in a Concentration-Dependent Manner” by Wolfgang Driever and Christiane Nüsslein-Volhard. Here, James Briscoe comments on one of a pair of papers from Driever and Nüsslein-Volhard, published back-to-back in Cell, that established bicoid as the first definitive example of a protein morphogen, that is, a protein which shapes a developmental pathway by virtue of its concentration gradient across a region of an embryo. Nüsslein-Volhard shared the Nobel Prize in Physiology or Medicine in 1995 with Edward B. Lewis and Eric F. Wieschaus for their discoveries related to control of early embryogenesis. Each Annotated Classic offers a personal perspective on a groundbreaking Cell paper from a leader in the field with notes on what stood out at the time of first reading and retrospective comments regarding the longer term influence of the work. To see James Briscoe’s thoughts on different parts of the manuscript, just download the PDF and then hover over or double- click the highlighted text and comment boxes. You can also view Briscoe’s annotation by opening the Comments navigation panel in Acrobat. Cell 157, April 24, 2014, 2014 ©2014 Elsevier Inc. Cell, Vol. 54, 95-104, July 1, 1988, Copyright © 1988 by Cell Press The bicoid Protein Determines Position in the Drosophila Embryo in a Concentration-Dependent Manner Wolfgang Driever and Christiane N0sslein-Volhard is established in early embryogenesis. -
Insect Egg Size and Shape Evolve with Ecology but Not Developmental Rate Samuel H
ARTICLE https://doi.org/10.1038/s41586-019-1302-4 Insect egg size and shape evolve with ecology but not developmental rate Samuel H. Church1,4*, Seth Donoughe1,3,4, Bruno A. S. de Medeiros1 & Cassandra G. Extavour1,2* Over the course of evolution, organism size has diversified markedly. Changes in size are thought to have occurred because of developmental, morphological and/or ecological pressures. To perform phylogenetic tests of the potential effects of these pressures, here we generated a dataset of more than ten thousand descriptions of insect eggs, and combined these with genetic and life-history datasets. We show that, across eight orders of magnitude of variation in egg volume, the relationship between size and shape itself evolves, such that previously predicted global patterns of scaling do not adequately explain the diversity in egg shapes. We show that egg size is not correlated with developmental rate and that, for many insects, egg size is not correlated with adult body size. Instead, we find that the evolution of parasitoidism and aquatic oviposition help to explain the diversification in the size and shape of insect eggs. Our study suggests that where eggs are laid, rather than universal allometric constants, underlies the evolution of insect egg size and shape. Size is a fundamental factor in many biological processes. The size of an 526 families and every currently described extant hexapod order24 organism may affect interactions both with other organisms and with (Fig. 1a and Supplementary Fig. 1). We combined this dataset with the environment1,2, it scales with features of morphology and physi- backbone hexapod phylogenies25,26 that we enriched to include taxa ology3, and larger animals often have higher fitness4. -
Embryonic Geometry Underlies Phenotypic Variation in Decanalized Conditions Anqi Huang1, Jean-Franc¸Ois Rupprecht1,2, Timothy E Saunders1,3,4*
RESEARCH ARTICLE Embryonic geometry underlies phenotypic variation in decanalized conditions Anqi Huang1, Jean-Franc¸ois Rupprecht1,2, Timothy E Saunders1,3,4* 1Mechanobiology Institute, National University of Singapore, Singapore, Singapore; 2CNRS and Turing Center for Living Systems, Centre de Physique The´orique, Aix- Marseille Universite´, Marseille, France; 3Department of Biological Sciences, National University of Singapore, Singapore, Singapore; 4Institute of Molecular and Cell Biology, Proteos, A*Star, Singapore, Singapore Abstract During development, many mutations cause increased variation in phenotypic outcomes, a phenomenon termed decanalization. Phenotypic discordance is often observed in the absence of genetic and environmental variations, but the mechanisms underlying such inter- individual phenotypic discordance remain elusive. Here, using the anterior-posterior (AP) patterning of the Drosophila embryo, we identified embryonic geometry as a key factor predetermining patterning outcomes under decanalizing mutations. With the wild-type AP patterning network, we found that AP patterning is robust to variations in embryonic geometry; segmentation gene expression remains reproducible even when the embryo aspect ratio is artificially reduced by more than twofold. In contrast, embryonic geometry is highly predictive of individual patterning defects under decanalized conditions of either increased bicoid (bcd) dosage or bcd knockout. We showed that the phenotypic discordance can be traced back to variations in the gap gene expression, which is rendered sensitive to the geometry of the embryo under mutations. *For correspondence: [email protected] Introduction Competing interests: The The phenomenon of canalization describes the constancy in developmental outcomes between dif- authors declare that no ferent individuals within a wild-type species growing in their native environments (Flatt, 2005; competing interests exist. -
Trading Bits in the Readout from a Genetic Network Marianne Bauer, Mariela Petkova, Thomas Gregor, Eric Wieschaus, William Bialek
Trading bits in the readout from a genetic network Marianne Bauer, Mariela Petkova, Thomas Gregor, Eric Wieschaus, William Bialek To cite this version: Marianne Bauer, Mariela Petkova, Thomas Gregor, Eric Wieschaus, William Bialek. Trading bits in the readout from a genetic network. 2020. pasteur-03216308 HAL Id: pasteur-03216308 https://hal-pasteur.archives-ouvertes.fr/pasteur-03216308 Preprint submitted on 3 May 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Trading bits in the readout from a genetic network Marianne Bauer,1−4 Mariela D. Petkova,5 Thomas Gregor,1;2;6 Eric F. Wieschaus,2−4 and William Bialek1;2;7 1Joseph Henry Laboratories of Physics, 2Lewis{Sigler Institute for Integrative Genomics, 3Department of Molecular Biology, and 4Howard Hughes Medical Institute, Princeton University, Princeton, NJ 08544 USA 5Program in Biophysics, Harvard University, Cambridge, MA 02138, USA 6Department of Developmental and Stem Cell Biology, UMR3738, Institut Pasteur, 75015 Paris, France 7Initiative for the Theoretical Sciences, The Graduate Center, City University of New York, 365 Fifth Ave, New York, NY 10016 In genetic networks, information of relevance to the organism is represented by the concentrations of transcription factor molecules. -
A Multiscale Agent-Based Model of Morphogenesis in Biological Systems
A Multiscale Agent-based Model of Morphogenesis in Biological Systems Sara Montagna Andrea Omicini Alessandro Ricci DEIS–Universita` di Bologna DEIS–Universita` di Bologna DEIS–Universita` di Bologna via Venezia 52, 47023 Cesena, Italy via Venezia 52, 47023 Cesena, Italy via Venezia 52, 47023 Cesena, Italy Email: [email protected] Email: [email protected] Email: [email protected] Abstract—Studying the complex phenomenon of pattern for- simulate dynamics at different hierarchical levels and spatial mation created by the gene expression is a big challenge in and temporal scales. the field of developmental biology. This spatial self-organisation A central challenge in the field of developmental biology autonomously emerges from the morphogenetic processes and the hierarchical organisation of biological systems seems to play is to understand how mechanisms at intracellular and cellular a crucial role. Being able to reproduce the systems dynamics level of the biological hierarchy interact to produce higher at different levels of such a hierarchy might be very useful. In level phenomena, such as precise and robust patterns of this paper we propose the adoption of the agent-based model as gene expressions which clearly appear in the first stages of an approach capable of capture multi-level dynamics. Each cell morphogenesis and develop later into different organs. How is modelled as an agent that absorbs and releases substances, divides, moves and autonomously regulates its gene expression. does local interaction among cells and inside cells give rise to As a case study we present an agent-based model of Drosophila the emergent self-organised patterns that are observable at the melanogaster morphogenesis. -
Krüppel Acts As a Gap Gene Regulating Expression of Hunchback and Even-Skipped in the Intermediate Germ Cricket Gryllus Bimaculatus
Developmental Biology 294 (2006) 471–481 www.elsevier.com/locate/ydbio Krüppel acts as a gap gene regulating expression of hunchback and even-skipped in the intermediate germ cricket Gryllus bimaculatus Taro Mito, Haruko Okamoto, Wakako Shinahara, Yohei Shinmyo, Katsuyuki Miyawaki, ⁎ Hideyo Ohuchi, Sumihare Noji Department of Biological Science and Technology, Faculty of Engineering, The University of Tokushima, 2-1 Minami-Jyosanjima-cho, Tokushima City 770-8506, Japan Received in publication 25 August 2005, revised 22 December 2005, accepted 27 December 2005 Available online 17 April 2006 Abstract In Drosophila, a long germ insect, segmentation occurs simultaneously across the entire body. In contrast, in short and intermediate germ insects, the anterior segments are specified during the blastoderm stage, while the remaining posterior segments are specified during later stages.In Drosophila embryos, the transcriptional factors coded by gap genes, such as Krüppel, diffuse in the syncytial environment and regulate the expression of other gap, pair-rule, and Hox genes. To understand the segmentation mechanisms in short and intermediate germ insects, we investigated the role of Kr ortholog (Gb'Kr) in the development of the intermediate germ insect Gryllus bimaculatus. We found that Gb'Kr is expressed in a gap pattern in the prospective thoracic region after cellularization of the embryo. To determine the function of Gb'Kr in segmentation, we analyzed knockdown phenotypes using RNA interference (RNAi). Gb'Kr RNAi depletion resulted in a gap phenotype in which the posterior of the first thoracic through seventh abdominal segments were deleted. Analysis of the expression patterns of Hox genes in Gb'Kr RNAi embryos indicated that regulatory relationships between Hox genes and Kr in Gryllus differ from those in Oncopeltus, another intermediate germ insect. -
2011 a New Species of Hylobothynus Ohaus, 1910 from Rondonia State, Brazil Lambillionea 111(2):159-160
Author(s) Year Title Publication URL Abadie E.I. 2011 A new species of Hylobothynus Ohaus, 1910 from Rondonia state, Brazil Lambillionea 111(2):159-160 Abdurahmanov G.M., Shokhin I.V. & Olejnik 2011 Pentodon algerinus - novyy vid zhukov-nosorogov dlya fauny Rossii iz The South of Russia: Ecology, Development D.I. Dagestana (Pentodon algerinus - new species of rhinoceros beetles for the 3:25-28 fauna of Russia from Dagestan) Agoiz-Bustamante J.L. & Blázquez Caselles 2011 Platycerus spinifer Schaufuss, 1862 (Coleoptera, Lucanidae), un nuevo Arquivos Entomolóxicos 5:109-110 http://www.aegaweb.com/arquivos_entomolo A. lucánido para la fauna de Cáceres xicos/ae05_2011_agoiz_blazquez_platycerus _spinifer_caceres.pdf Agoiz-Bustamante J.L., Blázquez Caselles 2011 Euserica mutata (Gyllenhall, 1817), nueva especie para Galicia, Noroeste de Arquivos Entomolóxicos 5:143-144 http://www.aegaweb.com/arquivos_entomolo A. & Garretas Muriel V.A. la Península Ibérica xicos/ae05_2011_agoiz_et_al_euserica_mut ata_nueva_galicia.pdf Ahrens D. 2011 A revision of the genus Archeohomaloplia Nikolajev, 1982 Bonn zoological Bulletin 60(2):117-138 http://www.museum- koenig.de/web/Forschung/Buecher/Beitraege /Verzeichnis/60_2_01_ahrens.pdf Ahrens D. & Fabrizi S. 2011 New species of Sericini from the Himalaya and adjacent mountains Bonn zoological Bulletin 60(2):139-164 http://www.museum- koenig.de/web/Forschung/Buecher/Beitraege /Verzeichnis/60_2_08_ahrens_2.pdf Ahrens D., Scott M. & Vogler A.P. 2011 The phylogeny of monkey beetles based on mitochondrial and ribosomal Molecular Phylogenetics and Evolution RNA genes 60:408-415 Akamine M., Ishikawa K., Maekawa K. & Kon 2011 The physical mechanism of cuticular color in Phelotrupes auratus Entomological Science 14(3):291-296 M. -
Modeling of Gap Gene Expression in Drosophila Kruppel Mutants
Modeling of Gap Gene Expression in Drosophila Kruppel Mutants Konstantin Kozlov1, Svetlana Surkova1, Ekaterina Myasnikova1, John Reinitz2, Maria Samsonova1* 1 Department of Computational Biology/Center for Advanced Studies, St.Petersburg State Polytechnical University, St.Petersburg, Russia, 2 Chicago Center for Systems Biology, Department of Ecology and Evolution, Department of Statistics, and Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois, United States of America Abstract The segmentation gene network in Drosophila embryo solves the fundamental problem of embryonic patterning: how to establish a periodic pattern of gene expression, which determines both the positions and the identities of body segments. The gap gene network constitutes the first zygotic regulatory tier in this process. Here we have applied the systems-level approach to investigate the regulatory effect of gap gene Kruppel (Kr) on segmentation gene expression. We acquired a large dataset on the expression of gap genes in Kr null mutants and demonstrated that the expression levels of these genes are significantly reduced in the second half of cycle 14A. To explain this novel biological result we applied the gene circuit method which extracts regulatory information from spatial gene expression data. Previous attempts to use this formalism to correctly and quantitatively reproduce gap gene expression in mutants for a trunk gap gene failed, therefore here we constructed a revised model and showed that it correctly reproduces the expression patterns of gap genes in Kr null mutants. We found that the remarkable alteration of gap gene expression patterns in Kr mutants can be explained by the dynamic decrease of activating effect of Cad on a target gene and exclusion of Kr gene from the complex network of gap gene interactions, that makes it possible for other interactions, in particular, between hb and gt, to come into effect. -
Embryology, Differentiation, Morphogenesis and Growth - Han Wang
REPRODUCTION AND DEVELOPMENT BIOLOGY - Embryology, Differentiation, Morphogenesis and Growth - Han Wang EMBRYOLOGY, DIFFERENTIATION, MORPHOGENESIS AND GROWTH Han Wang Department of Zoology and Stephenson Research & Technology Center, University of Oklahoma, Norman, Oklahoma, USA Keywords: Zygote, cleavage, gastrulation, ectoderm, mesoderm, endoderm, commitment, specification, determination, differential gene expression, induction, competence, morphogens, signal transduction pathways, cell adhesion, cadherins, extracellular matrix (ECM), organogenesis and apoptosis Contents 1. Introduction – Life is a cycle 2. Cleavage 2.1. Biphasic Cell Divisions during Cleavage 2.2. Cleavage Patterns 2.3. Midblastula Transition (MBT) 3. Gastrulation, cell movements and the three germ layers 3.1. Modes of Cell Movements 3.2. Ectoderm and its Derivatives 3.3. Mesoderm and its Derivatives 3.4. Endoderm and its Derivatives 3.5. Cell Migration 4. Axis formation 4.1. Anterior-posterior Axis (AP axis) 4.2. Dorsal-ventral Axis (DV axis) 4.3. Left-right Axis (LR axis) 5. Differential gene expression and cellular differentiation 5.1. Genomic Equivalence and Somatic Nuclear Transfer – Cloning 5.2. Cell Fate Commitment 5.2.1. Autonomous Specification 5.2.2. Conditional Specification 5.2.3. Syncytial Specification 5.3. DifferentialUNESCO Gene Expression – EOLSS 6. Induction and morphogenesis 6.1. Induction, Competence, and Cell-cell Communications 6.2. Signal TransductionSAMPLE Pathways CHAPTERS 6.2.1. General Features of Signal Transduction Pathways 6.2.2. Wnt Signaling 6.2.3. Hedgehog Signaling 6.2.3. Notch Signaling 6.2.4. Other Signaling Pathways 6.3. Morphogenesis 7. Growth 7.1. Cellular Growth 7.2. Isometric Growth and Allometric Growth ©Encyclopedia of Life Support Systems(EOLSS) REPRODUCTION AND DEVELOPMENT BIOLOGY - Embryology, Differentiation, Morphogenesis and Growth - Han Wang 7.3. -
PNR Lecture 24
Lecture 24 Gene Regulation during Drosophila Development An organism arises from a fertilized egg as a result of three key processes: Cell division, Cell differentiation and Morphogenesis Following fertilization, as the egg starts dividing and development proceeds, cells which are initially undifferentiated (Embryonic stem cells) ultimately differentiate into specific cell types. Differential expression of genes in the embryonal cells plays a key role in their differentiation into diverse cell types, tissues and organs during development. Regulation of gene expression during development is directed by: Maternal molecules in the fertilized egg’s cytoplasm Extracellular signals and cell-cell interactions In animals, development & differentiation begin in early embryo: First, the basic body plan is established Next, Major axes are established (Dorsal, ventral, anterior, posterior) Gene regulation during embryonic development is studied in a number of model organisms such as Drosophila melanogaster, Cenorhabditis elegans, zebra fish, mouse etc. Drosophila melanogaster Bilateral symmetry Segmented body that is divided into Head, Thorax and Abdomen Drosophila melaogaster Early embryonic development After fertilization, the diploid, zygotic nucleus undergoes 10 rapid cleavages. At this stage, the embryo is called a syncitium because it is a single cell with multiple nuclei. After 8 cleavages, the resulting 256 nuclei begin to migrate to the outer edge of the cell. About 90 minutes after fertilization, most nuclei have reached the periphery. These nuclei undergo 3 more cleavages. Plasma membranes finally partition ~6,000 nuclei into separate cells at the thirteenth division. By this time the basic body plan (Body axes, segments, boundaries) is already determined. When the nuclei reach the periphery, they are totipotent.