The Use of Microalgae and Cyanobacteria in the Improvement of Agricultural Practices: a Review on Their Biofertilising, Biostimulating and Biopesticide Roles
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide
antioxidants Review Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide Ivan Kushkevych 1,* , Veronika Bosáková 1,2 , Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 3,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (V.B.); [email protected] (M.V.) 2 Department of Biology, Faculty of Medicine, Masaryk University, 62500 Brno, Czech Republic 3 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Vienna, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: Hydrogen sulfide is a toxic compound that can affect various groups of water microorgan- isms. Photolithotrophic sulfur bacteria including Chromatiaceae and Chlorobiaceae are able to convert inorganic substrate (hydrogen sulfide and carbon dioxide) into organic matter deriving energy from photosynthesis. This process takes place in the absence of molecular oxygen and is referred to as anoxygenic photosynthesis, in which exogenous electron donors are needed. These donors may be reduced sulfur compounds such as hydrogen sulfide. This paper deals with the description of this metabolic process, representatives of the above-mentioned families, and discusses the possibility using anoxygenic phototrophic microorganisms for the detoxification of toxic hydrogen sulfide. Moreover, their general characteristics, morphology, metabolism, and taxonomy are described as Citation: Kushkevych, I.; Bosáková, well as the conditions for isolation and cultivation of these microorganisms will be presented. V.; Vítˇezová,M.; Rittmann, S.K.-M.R. -
Salmon Mortalities at Inver Bay and Mcswyne’S Bay Finfish Farms, County Donegal, Ireland, During 2003 ______
6$/0210257$/,7,(6$7,19(5%$<$1'0&6:<1(¶6%$< ),1),6+)$506&2817<'21(*$/,5(/$1''85,1* )HEUXDU\ 0V0DUJRW&URQLQ 'U&DUROLQH&XVDFN 0V)LRQD*HRJKHJDQ 'U'DYH-DFNVRQ 'U(YLQ0F*RYHUQ 'U7HUU\0F0DKRQ 'U)UDQFLV2¶%HLUQ 0U0LFKHiOÏ&LQQHLGH 0U-RH6LONH &KHPLVWU\6HFWLRQ0DULQH,QVWLWXWH*DOZD\ (G 3K\WRSODQNWRQ8QLW0DULQH,QVWLWXWH*DOZD\ )LVK+HDOWK8QLW0DULQH,QVWLWXWH'XEOLQ $TXDFXOWXUH8QLW0DULQH,QVWLWXWH*DOZD\ &KHPLVWU\6HFWLRQ0DULQH,QVWLWXWH*DOZD\ %LRWR[LQ8QLW0DULQH,QVWLWXWH'XEOLQ %HQWKLF0RQLWRULQJ8QLW0DULQH,QVWLWXWH*DOZD\ 0DULQH(QYLURQPHQW )RRG6DIHW\6HUYLFHV0DULQH,QVWLWXWH*DOZD\ %LRWR[LQ8QLW0DULQH,QVWLWXWH*DOZD\ ,66112 Salmon Mortalities at Inver Bay and McSwyne’s Bay Finfish farms, County Donegal, Ireland, during 2003 ________________________________________________________________________ 2 Marine, Environment and Health Series, No.15, 2004 ___________________________________________________________________________________ Page no. CHAPTER 1 INTRODUCTION 6 1.1 Summary 6 1.2 Background 6 1.3 Summary mortalities by farm 8 1.4 Pattern of mortality development 9 1.5 Phases of MI investigation 10 1.6 Alternative scenarios 11 CHAPTER 2 ENVIRONMENTAL CONDITIONS 12 2.1 Summary 12 2.2 Currents 12 2.3 Water column structure 17 2.4 Wind data 19 2.5 Temperatures recorded in Inver and McSwynes Bay during 2003 21 2.6 References 24 CHAPTER 3 FISH HEALTH AND FARM MANAGEMENT, 2003 25 3.1 Data sources and approach 25 3.2 Site visits and Veterinary investigations 25 3.3 Farm management 36 3.4 Feed 36 3.5 Cage analysis 37 3.6 Sea lice (counts and treatments) 37 3.7 Discussion -
Limits of Life on Earth Some Archaea and Bacteria
Limits of life on Earth Thermophiles Temperatures up to ~55C are common, but T > 55C is Some archaea and bacteria (extremophiles) can live in associated usually with geothermal features (hot springs, environments that we would consider inhospitable to volcanic activity etc) life (heat, cold, acidity, high pressure etc) Thermophiles are organisms that can successfully live Distinguish between growth and survival: many organisms can survive intervals of harsh conditions but could not at high temperatures live permanently in such conditions (e.g. seeds, spores) Best studied extremophiles: may be relevant to the Interest: origin of life. Very hot environments tolerable for life do not seem to exist elsewhere in the Solar System • analogs for extraterrestrial environments • `extreme’ conditions may have been more common on the early Earth - origin of life? • some unusual environments (e.g. subterranean) are very widespread Extraterrestrial Life: Spring 2008 Extraterrestrial Life: Spring 2008 Grand Prismatic Spring, Yellowstone National Park Hydrothermal vents: high pressure in the deep ocean allows liquid water Colors on the edge of the at T >> 100C spring are caused by different colonies of thermophilic Vents emit superheated water (300C or cyanobacteria and algae more) that is rich in minerals Hottest water is lifeless, but `cooler’ ~50 species of such thermophiles - mostly archae with some margins support array of thermophiles: cyanobacteria and anaerobic photosynthetic bacteria oxidize sulphur, manganese, grow on methane + carbon monoxide etc… Sulfolobus: optimum T ~ 80C, minimum 60C, maximum 90C, also prefer a moderately acidic pH. Live by oxidizing sulfur Known examples can grow (i.e. multiply) at temperatures which is abundant near hot springs. -
First Record of Navicula Pelagica (Bacillariophyta) in the South Atlantic Ocean: the Intriguing Occurrence of a Sea-Ice-Dwelling Species in a Tropical Estuary
First record of Navicula pelagica (Bacillariophyta) in the South Atlantic Ocean: the intriguing occurrence of a sea-ice-dwelling species in a tropical estuary HELEN MICHELLE DE JESUS AFFE1*, DIOGO SOUZA BEZERRA ROCHA2, MARIÂNGELA MENEZES3 & JOSÉ MARCOS DE CASTRO NUNES1 1 Laboratório de Algas Marinhas, Instituto de Biologia, Universidade Federal da Bahia. Rua Barão de Jeremoabo s/n, Ondina, Salvador, Bahia, 40170-115. Brazil 2 Instituto de Pesquisa Jardim Botânico do Rio de Janeiro. Rua Pacheco Leão, nº 915, Rio de Janeiro, Rio de Janeiro, 22460-030. Brazil 3 Laboratório de Ficologia, Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro. Quinta da Boa Vista s/n, São Cristovão, Rio de Janeiro, Rio de Janeiro, 20940040. Brazil * Corresponding author: [email protected] Abstract. Despite the wide distribution of species of the genus Navicula in the most diverse habitats around the globe, Navicula pelagica Cleve (Bacillariophyceae) is reported almost exclusively as one of the main components of the diatom biota of Arctic sea-ice. The present study is the first record of N. pelagica in the South Atlantic Ocean (Brazil) and demonstrates an ecological niche model of the species. The analyzed specimens were rectangular, with rounded angles in pleural view, the pervalvar axis measured 7.9-9.5μm and the apical axis 22-25μm, an evident central nucleus and two comma-shaped chloroplasts, one on each side of the nucleus, were observed. The specimens formed chains of 35 cells, on average, arranged in the typical pattern of rotation about the chain axis relative to their neighboring cell. The applied ecological niche model indicated that the Brazilian coast has low environmental suitability (~12%) for the development of N. -
Coral Feeding on Microalgae Assessed with Molecular Trophic Markers
Molecular Ecology (2013) doi: 10.1111/mec.12486 Coral feeding on microalgae assessed with molecular trophic markers MIGUEL C. LEAL,*† CHRISTINE FERRIER-PAGES,‡ RICARDO CALADO,* MEGAN E. THOMPSON,† MARC E. FRISCHER† and JENS C. NEJSTGAARD† *Departamento de Biologia & CESAM, Universidade de Aveiro, Campus Universitario de Santiago, 3810-193 Aveiro, Portugal, †Skidaway Institute of Oceanography, 10 Ocean Science Circle, 31411 Savannah, GA, USA, ‡Centre Scientifique de Monaco, Avenue St-Martin, 98000 Monaco, Monaco Abstract Herbivory in corals, especially for symbiotic species, remains controversial. To investi- gate the capacity of scleractinian and soft corals to capture microalgae, we conducted controlled laboratory experiments offering five algal species: the cryptophyte Rhodo- monas marina, the haptophytes Isochrysis galbana and Phaeocystis globosa, and the diatoms Conticribra weissflogii and Thalassiosira pseudonana. Coral species included the symbiotic soft corals Heteroxenia fuscescens and Sinularia flexibilis, the asymbiotic scleractinian coral Tubastrea coccinea, and the symbiotic scleractinian corals Stylophora pistillata, Pavona cactus and Oculina arbuscula. Herbivory was assessed by end-point PCR amplification of algae-specific 18S rRNA gene fragments purified from coral tissue genomic DNA extracts. The ability to capture microalgae varied with coral and algal species and could not be explained by prey size or taxonomy. Herbivory was not detected in S. flexibilis and S. pistillata. P. globosa was the only algal prey that was never captured by any coral. Although predation defence mechanisms have been shown for Phaeocystis spp. against many potential predators, this study is the first to suggest this for corals. This study provides new insights into herbivory in symbiotic corals and suggests that corals may be selective herbivorous feeders. -
Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium HT-58-2
life Article Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium HT-58-2 Xiaohe Jin 1,*, Eric S. Miller 2 and Jonathan S. Lindsey 1 1 Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; [email protected] 2 Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695-7615, USA; [email protected] * Correspondence: [email protected] Abstract: Cyanobacteria are known as rich repositories of natural products. One cyanobacterial- microbial consortium (isolate HT-58-2) is known to produce two fundamentally new classes of natural products: the tetrapyrrole pigments tolyporphins A–R, and the diterpenoid compounds tolypodiol, 6-deoxytolypodiol, and 11-hydroxytolypodiol. The genome (7.85 Mbp) of the Nostocales cyanobacterium HT-58-2 was annotated previously for tetrapyrrole biosynthesis genes, which led to the identification of a putative biosynthetic gene cluster (BGC) for tolyporphins. Here, bioinformatics tools have been employed to annotate the genome more broadly in an effort to identify pathways for the biosynthesis of tolypodiols as well as other natural products. A putative BGC (15 genes) for tolypodiols has been identified. Four BGCs have been identified for the biosynthesis of other natural products. Two BGCs related to nitrogen fixation may be relevant, given the association of nitrogen stress with production of tolyporphins. The results point to the rich biosynthetic capacity of the HT-58-2 cyanobacterium beyond the production of tolyporphins and tolypodiols. Citation: Jin, X.; Miller, E.S.; Lindsey, J.S. Natural Product Gene Clusters in Keywords: anatoxin-a/homoanatoxin-a; hapalosin; heterocyst glycolipids; natural products; sec- the Filamentous Nostocales ondary metabolites; shinorine; tolypodiols; tolyporphins Cyanobacterium HT-58-2. -
Biological Nitrogen Fixation Dr. Anuj Rani, Department of Botany, T.N.B
E- learning: B.Sc. Part-II, Botany Hons and Part-I Sub.] Biological Nitrogen Fixation Dr. Anuj Rani, Department of Botany, T.N.B. College, Bhagalpur Email: [email protected] Conversion of molecular nitrogen (N2) of the atmosphere into inorganic nitrogenous compounds such as nitrates or ammonia is called as nitrogen fixation. When this nitrogen fixation occurs through the agency of some living organisms, the process is called as biological nitrogen fixation in which atmospheric nitrogen is converted into ammonia. Not all the organisms have capacity to fix molecular nitrogen (N2) of the atmosphere. Only certain prokaryotic micro-organisms such as some free living bacteria, cyanobacteria (blue- green algae) and some of the prokaryotic micro- organisms in symbiotic association with other plants (mostly legumes) can fix atmospheric nitrogen. They can be grouped as follows: A. Free Living: 1. Autotrophic: (a) Aerobic e.g., some cyanobacteria (blue-green algae). All those blue-green algae which can fix atmospheric nitrogen usually contain heterocyst’s such as Nostoc, Anabaena, Tolypothrix, Aulosira, Calothrix etc. But all the heterocyst’s bearing blue-green algae may not be atm. nitrogen fixers. A few non- heterocystous blue-green algae such as Gloeotheca are also known to fix atm. N2. (b) Anaerobic e.g., certain bacteria such as Chromatium and Rhodospirillum. 2. Heterotrophic: (a) Aerobic e.g., certain bacteria such as Azotobacter, Azospirillum, Derxia and Beijerinckia. (b) Facultative e.g., certain bacteria such as Bacillus and Klebsiella. (c) Anaerobic e.g., certain bacteria such as Clostridium and Methanococcus. 1 B. Symbiotic: (a) Root Nodules of Leguminous Plants: Various types of bacteria called rhizobia associated with root nodules of legumes can fix atm. -
PROTISTS Shore and the Waves Are Large, Often the Largest of a Storm Event, and with a Long Period
(seas), and these waves can mobilize boulders. During this phase of the storm the rapid changes in current direction caused by these large, short-period waves generate high accelerative forces, and it is these forces that ultimately can move even large boulders. Traditionally, most rocky-intertidal ecological stud- ies have been conducted on rocky platforms where the substrate is composed of stable basement rock. Projec- tiles tend to be uncommon in these types of habitats, and damage from projectiles is usually light. Perhaps for this reason the role of projectiles in intertidal ecology has received little attention. Boulder-fi eld intertidal zones are as common as, if not more common than, rock plat- forms. In boulder fi elds, projectiles are abundant, and the evidence of damage due to projectiles is obvious. Here projectiles may be one of the most important defi ning physical forces in the habitat. SEE ALSO THE FOLLOWING ARTICLES Geology, Coastal / Habitat Alteration / Hydrodynamic Forces / Wave Exposure FURTHER READING Carstens. T. 1968. Wave forces on boundaries and submerged bodies. Sarsia FIGURE 6 The intertidal zone on the north side of Cape Blanco, 34: 37–60. Oregon. The large, smooth boulders are made of serpentine, while Dayton, P. K. 1971. Competition, disturbance, and community organi- the surrounding rock from which the intertidal platform is formed zation: the provision and subsequent utilization of space in a rocky is sandstone. The smooth boulders are from a source outside the intertidal community. Ecological Monographs 45: 137–159. intertidal zone and were carried into the intertidal zone by waves. Levin, S. A., and R. -
Anabaena Variabilis ATCC 29413
Standards in Genomic Sciences (2014) 9:562-573 DOI:10.4056/sig s.3899418 Complete genome sequence of Anabaena variabilis ATCC 29413 Teresa Thiel1*, Brenda S. Pratte1 and Jinshun Zhong1, Lynne Goodwin 5, Alex Copeland2,4, Susan Lucas 3, Cliff Han 5, Sam Pitluck2,4, Miriam L. Land 6, Nikos C Kyrpides 2,4, Tanja Woyke 2,4 1Department of Biology, University of Missouri-St. Louis, St. Louis, MO 2DOE Joint Genome Institute, Walnut Creek, CA 3Lawrence Livermore National Laboratory, Livermore, CA 4Lawrence Berkeley National Laboratory, Berkeley, CA 5Los Alamos National Laboratory, Los Alamos, NM 6Oak Ridge National Laboratory, Oak Ridge, TN *Correspondence: Teresa Thiel ([email protected]) Anabaena variabilis ATCC 29413 is a filamentous, heterocyst-forming cyanobacterium that has served as a model organism, with an extensive literature extending over 40 years. The strain has three distinct nitrogenases that function under different environmental conditions and is capable of photoautotrophic growth in the light and true heterotrophic growth in the dark using fructose as both carbon and energy source. While this strain was first isolated in 1964 in Mississippi and named Ana- baena flos-aquae MSU A-37, it clusters phylogenetically with cyanobacteria of the genus Nostoc . The strain is a moderate thermophile, growing well at approximately 40° C. Here we provide some additional characteristics of the strain, and an analysis of the complete genome sequence. Introduction Classification and features Anabaena variabilis ATCC 29413 (=IUCC 1444 = The general characteristics of A. variabilis are PCC 7937) is a semi-thermophilic, filamentous, summarized in Table 1 and its phylogeny is shown heterocyst-forming cyanobacterium. -
Microalgae Strain Catalogue
Microalgae strain catalogue A strain selection guide for microalgae users: cultivation and chemical characteristics for high added-value products CONTENTS 1. INTRODUCTION .......................................................................................... 4 2. Strain catalogue ......................................................................................... 5 Anabaena cylindrica ........................................................................................... 6 Arthrospira platensis .......................................................................................... 8 Botryococcus braunii ........................................................................................ 10 Chlorella luteoviridis ......................................................................................... 12 Chlorella sorokiniana ........................................................................................ 14 Chlorella vulgaris .............................................................................................. 16 Dunaliella salina ............................................................................................... 18 Dunaliella tertiolecta ......................................................................................... 20 Haematococcus pluvialis .................................................................................. 22 Microcystis aeruginosa ..................................................................................... 24 Nannochloropsis occulata ............................................................................... -
Phosphoenolpyruvate Carboxylase Intrinsically Located in the Chloroplast of Rice Plays a Crucial Role in Ammonium Assimilation
Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation Chisato Masumotoa,1, Shin-Ichi Miyazawaa,1, Hiroshi Ohkawaa,2, Takuya Fukudaa, Yojiro Taniguchia,3, Seiji Murayamaa,4, Miyako Kusanob, Kazuki Saitob, Hiroshi Fukayamaa,5, and Mitsue Miyaoa,6 aPhotobiology and Photosynthesis Research Unit, National Institute of Agrobiological Sciences, Kannondai, Tsukuba 305-8602, Japan; and bRIKEN Plant Science Center, Yokohama, Kanagawa 230-0045, Japan Edited by Elisabeth Gantt, University of Maryland, College Park, MD, and approved February 4, 2010 (received for review November 12, 2009) Phosphoenolpyruvate carboxylase (PEPC) is a key enzyme of primary encoded by a small gene family (5). Treatments that lead to ele- metabolism in bacteria, algae, and vascular plants, and is believed to vation of the PEPC activity, such as enhanced nitrogen assimilation Oryza sativa be cytosolic. Here we show that rice ( L.) has a plant-type and Pi starvation in C3 plant leaves (6, 7), induce expression of PEPC, Osppc4, that is targeted to the chloroplast. Osppc4 was ex- PEPC kinase gene(s) and phosphorylation of PEPC (8, 9). These pressed in all organs tested and showed high expression in the leaves. mechanisms strictly regulate PEPC activity, which is essential for Its expression in the leaves was confined to mesophyll cells, and plants because of the irreversible nature of the reaction. Osppc4 accounted for approximately one-third of total PEPC protein In addition to the plant-type PEPC, vascular plants have in theleaf blade.RecombinantOsppc4 wasactivein thePEPCreaction, another isozyme, a bacterial-type PEPC that lacks the conserved V showing max comparable to cytosolic isozymes.