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Highly Divergent 16S Rrna Sequences in Ribosomal Operons of Scytonema Hyalinum (Cyanobacteria) Jeffrey R
John Carroll University Carroll Collected 2017 Faculty Bibliography Faculty Bibliographies Community Homepage 10-2017 Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria) Jeffrey R. Johansen John Carroll University, [email protected] Jan Mares Nicole Pietrasiak New Mexico State University Marketa Bohunicka Jan Zima Jr. See next page for additional authors Follow this and additional works at: https://collected.jcu.edu/fac_bib_2017 Part of the Biology Commons, and the Ecology and Evolutionary Biology Commons Recommended Citation Johansen, Jeffrey R.; Mares, Jan; Pietrasiak, Nicole; Bohunicka, Marketa; Zima, Jan Jr.; Stenclova, Lenka; and Hauer, Tomas, "Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria)" (2017). 2017 Faculty Bibliography. 47. https://collected.jcu.edu/fac_bib_2017/47 This Article is brought to you for free and open access by the Faculty Bibliographies Community Homepage at Carroll Collected. It has been accepted for inclusion in 2017 Faculty Bibliography by an authorized administrator of Carroll Collected. For more information, please contact [email protected]. Authors Jeffrey R. Johansen, Jan Mares, Nicole Pietrasiak, Marketa Bohunicka, Jan Zima Jr., Lenka Stenclova, and Tomas Hauer This article is available at Carroll Collected: https://collected.jcu.edu/fac_bib_2017/47 RESEARCH ARTICLE Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria) Jeffrey R. Johansen1,2*, Jan MaresÏ 2,3,4, Nicole Pietrasiak5, -
Predictive Distribution Model for the Boreal Felt Lichen Erioderma Pedicellatum in Newfoundland, Canada
Vol. 15: 115–127, 2011 ENDANGERED SPECIES RESEARCH Published online November 10 doi: 10.3354/esr00374 Endang Species Res OPENPEN ACCESSCCESS Predictive distribution model for the boreal felt lichen Erioderma pedicellatum in Newfoundland, Canada Yolanda F. Wiersma1,*, Randolph Skinner1,2 1Department of Biology, Memorial University, St. John’s, Newfoundland A1B 3X9, Canada 2Present address: Atlantic Canada Conservation Data Centre, Corner Brook, Newfoundland A2H 751, Canada ABSTRACT: The worldwide population of the boreal felt lichen Erioderma pedicellatum is cur- rently listed as Critically Endangered by the IUCN, with over 95% of the current population resid- ing on the island of Newfoundland, Canada. Surveys of E. pedicellatum habitats and populations have primarily been opportunistic, rather than systematic, in nature. We used a geographic infor- mation system and compiled occurrence data and pseudo-absence data to develop the first pre- dictive spatial distribution model for E. pedicellatum in Newfoundland. Of the suite of 19 models using 4 different parameters examined, the model with distance from coastline and topographic aspect was the best candidate. The final model had low sensitivity (i.e. a low ability to predict false presence), but high specificity (a strong ability to predict true absence). The final predictive model can contribute to future species status assessments and provincial conservation management decisions that require information on probable species distribution. KEY WORDS: Habitat · Lichen · Predictive habitat model · Species distribution · Rare species · Generalized additive model · Newfoundland Resale or republication not permitted without written consent of the publisher INTRODUCTION Canada, E. pedicellatum has been listed as a species of special concern by the Committee on the Status of In conservation biology, determining the spatial Endangered Wildlife in Canada (COSEWIC), and distribution of rare species is a challenge. -
Antiviral Cyanometabolites—A Review
biomolecules Review Antiviral Cyanometabolites—A Review Hanna Mazur-Marzec 1,*, Marta Cegłowska 2 , Robert Konkel 1 and Krzysztof Pyr´c 3 1 Division of Marine Biotechnology, University of Gda´nsk,Marszałka J. Piłsudskiego 46, PL-81-378 Gdynia, Poland; [email protected] 2 Institute of Oceanology, Polish Academy of Science, Powsta´nców Warszawy 55, PL-81-712 Sopot, Poland; [email protected] 3 Virogenetics Laboratory of Virology, Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, PL-30-387 Krakow, Poland; [email protected] * Correspondence: [email protected] Abstract: Global processes, such as climate change, frequent and distant travelling and population growth, increase the risk of viral infection spread. Unfortunately, the number of effective and accessible medicines for the prevention and treatment of these infections is limited. Therefore, in recent years, efforts have been intensified to develop new antiviral medicines or vaccines. In this review article, the structure and activity of the most promising antiviral cyanobacterial products are presented. The antiviral cyanometabolites are mainly active against the human immunodeficiency virus (HIV) and other enveloped viruses such as herpes simplex virus (HSV), Ebola or the influenza viruses. The majority of the metabolites are classified as lectins, monomeric or dimeric proteins with unique amino acid sequences. They all show activity at the nanomolar range but differ in carbohydrate specificity and recognize a different epitope on high mannose oligosaccharides. The cyanobacterial lectins include cyanovirin-N (CV-N), scytovirin (SVN), microvirin (MVN), Microcystis viridis lectin (MVL), and Oscillatoria agardhii agglutinin (OAA). Cyanobacterial polysaccharides, peptides, and other metabolites also have potential to be used as antiviral drugs. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
A Field Guide to Biological Soil Crusts of Western U.S. Drylands Common Lichens and Bryophytes
A Field Guide to Biological Soil Crusts of Western U.S. Drylands Common Lichens and Bryophytes Roger Rosentreter Matthew Bowker Jayne Belnap Photographs by Stephen Sharnoff Roger Rosentreter, Ph.D. Bureau of Land Management Idaho State Office 1387 S. Vinnell Way Boise, ID 83709 Matthew Bowker, Ph.D. Center for Environmental Science and Education Northern Arizona University Box 5694 Flagstaff, AZ 86011 Jayne Belnap, Ph.D. U.S. Geological Survey Southwest Biological Science Center Canyonlands Research Station 2290 S. West Resource Blvd. Moab, UT 84532 Design and layout by Tina M. Kister, U.S. Geological Survey, Canyonlands Research Station, 2290 S. West Resource Blvd., Moab, UT 84532 All photos, unless otherwise indicated, copyright © 2007 Stephen Sharnoff, Ste- phen Sharnoff Photography, 2709 10th St., Unit E, Berkeley, CA 94710-2608, www.sharnoffphotos.com/. Rosentreter, R., M. Bowker, and J. Belnap. 2007. A Field Guide to Biological Soil Crusts of Western U.S. Drylands. U.S. Government Printing Office, Denver, Colorado. Cover photos: Biological soil crust in Canyonlands National Park, Utah, cour- tesy of the U.S. Geological Survey. 2 Table of Contents Acknowledgements ....................................................................................... 4 How to use this guide .................................................................................... 4 Introduction ................................................................................................... 4 Crust composition .................................................................................. -
Pacific Northwest Fungi Project
North American Fungi Volume 6, Number 7, Pages 1-8 Published July 19, 2011 Hypogymnia pulverata (Parmeliaceae) and Collema leptaleum (Collemataceae), two macrolichens new to Alaska Peter R. Nelson1,2, James Walton3, Heather Root1 and Toby Spribille4 1 Department of Botany and Plant Pathology, Cordley Hall 2082, Oregon State University Corvallis, Oregon, 2 National Park Service, Central Alaska Network, 4175 Geist Road, Fairbanks, Alaska, 3 National Park Service, Southwest Alaska Network, 240 West 5th Ave., Anchorage, Alaska, 4 Institute of Plant Sciences, University of Graz, Holteigasse 6, A-8010 Graz, Austria. Nelson, P. R., J. Walton, H. Root, and T. Spribille. 2011. Hypogymnia pulverata (Parmeliaceae) and Collema leptaleum (Collemataceae), two macrolichens new to Alaska. North American Fungi 6(7): 1-8. doi: 10.2509/naf2011.006.007 Corresponding author: Peter R. Nelson, [email protected] Accepted for publication July 18, 2011. http://pnwfungi.org Copyright © 2011 Pacific Northwest Fungi Project. All rights reserved. Abstract: Hypogymnia pulverata is a foliose macrolichen distinguished by its solid medulla and laminal soredia. Though widespread in Asia, it is considered rare in North America, where it is currently known from three widely separated locations in Québec, Oregon, and Alaska. We document the first report of this species from Alaska and from several new localities within south-central and southwestern Alaska. Collema leptaleum is a non-stratified, foliose cyanolichen distinguished by its multicellular, fusiform ascospores and a distinct exciple cell type. It is globally distributed, known most proximately from Kamchatka, Japan and eastern North America, but considered rare in Europe. It has not heretofore been reported from western North America. -
Extended Phylogeny and a Revised Generic Classification of The
The Lichenologist 46(5): 627–656 (2014) 6 British Lichen Society, 2014 doi:10.1017/S002428291400019X Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM and Per M. JØRGENSEN Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specif- ically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorpo- rating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as available morphological and chemical data. Four genera are established as new: Austroparmeliella (for the ‘Parmeliella’ lacerata group), Nebularia (for the ‘Parmeliella’ incrassata group), Nevesia (for ‘Fuscopannaria’ sampaiana), and Pectenia (for the ‘Degelia’ plumbea group). Two genera are reduced to synonymy, Moelleropsis (included in Fuscopannaria) and Santessoniella (non-monophyletic; type included in Psoroma). Lepido- collema, described as monotypic, is expanded to include 23 species, most of which have been treated in the ‘Parmeliella’ mariana group. Homothecium and Leightoniella, previously treated in the Collemataceae, are here referred to the Pannariaceae. We propose 41 new species-level combinations in the newly described and re-circumscribed genera mentioned above, as well as in Leciophysma and Psoroma. Key words: Collemataceae, lichen taxonomy, model adequacy, model selection Accepted for publication 13 March 2014 Introduction which include c. -
Taxonomy, Phylogeny and Biogeography of the Lichen Genus Peltigera in Papua New Guinea
Fungal Diversity Taxonomy, phylogeny and biogeography of the lichen genus Peltigera in Papua New Guinea Sérusiaux, E.1*, Goffinet, B.2, Miadlikowska, J.3 and Vitikainen, O.4 1Plant Taxonomy and Conservation Biology Unit, University of Liège, Sart Tilman B22, B-4000 Liège, Belgium 2Department of Ecology and Evolutionary Biology, University of Connecticut, 75 North Eagleville Road, Storrs CT 06269-3043 USA 3Department of Biology, Duke University, Durham, NC 27708-0338, USA 4Botanical Museum (Mycology), P.O. Box 7, FI-00014 University of Helsinki, Finland Sérusiaux, E., Goffinet, B., Miadlikowska, J. and Vitikainen, O. (2009). Taxonomy, phylogeny and biogeography of the the lichen genus Peltigera in Papua New Guinea. Fungal Diversity 38: 185-224. The lichen genus Peltigera is represented in Papua New Guinea by 15 species, including 6 described as new for science: P. cichoracea, P. didactyla, P. dolichorhiza, P. erioderma, P. extenuata, P. fimbriata sp. nov., P. granulosa sp. nov., P. koponenii sp. nov., P. montis-wilhelmii sp. nov., P. nana, P. oceanica, P. papuana sp. nov., P. sumatrana, P. ulcerata, and P. weberi sp. nov. Peltigera macra and P. tereziana var. philippinensis are reduced to synonymy with P. nana, whereas P. melanocoma is maintained as a species distinct from P. nana pending further studies. The status of several putative taxa referred to P. dolichorhiza s. lat. in the Sect. Polydactylon remains to be studied on a wider geographical scale and in the context of P. dolichorhiza and P. neopolydactyla. The phylogenetic affinities of all but one regional species (P. extenuata) are studied based on inferences from ITS (nrDNA) sequence data, in the context of a broad taxonomic sampling within the genus. -
Boreal Felt Lichen (Erioderma Pedicellatum) Is a Globally Threatened, Conspicuous Foliose Cyanolichen Belonging to the Pannariaceae
COSEWIC Assessment and Status Report on the Boreal Felt Lichen Erioderma pedicellatum Atlantic population Boreal population in Canada ENDANGERED - Atlantic population 2002 SPECIAL CONCERN - Boreal population 2002 COSEWIC COSEPAC COMMITTEE ON THE STATUS OF COMITÉ SUR LA SITUATION DES ENDANGERED WILDLIFE IN ESPÈCES EN PÉRIL CANADA AU CANADA COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: Please note: Persons wishing to cite data in the report should refer to the report (and cite the author(s)); persons wishing to cite the COSEWIC status will refer to the assessment (and cite COSEWIC). A production note will be provided if additional information on the status report history is required. COSEWIC 2002. COSEWIC assessment and status report on the boreal felt lichen Erioderma pedicellatum in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. viii + 50 pp. Maass, W. and D. Yetman. 2002. COSEWIC assessment and status report on the boreal felt lichen Erioderma pedicellatum in Canada, in COSEWIC assessment and status report on the boreal felt lichen Erioderma pedicellatum in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. 1- 50 pp. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment Canada Ottawa, ON K1A 0H3 Tel.: (819) 997-4991 / (819) 953-3215 Fax: (819) 994-3684 E-mail: COSEWIC/[email protected] http://www.cosewic.gc.ca Ếgalement disponible en français sous le titre Évaluation et Rapport du COSEPAC sur la situation de l’erioderme boréal (Erioderma pedicellatum) au Canada Cover illustration: Boreal felt lichen — Provided by the author, photo by Dr. -
Morphological Diversity of Benthic Nostocales (Cyanoprokaryota/Cyanobacteria) from the Tropical Rocky Shores of Huatulco Region, Oaxaca, México
Phytotaxa 219 (3): 221–232 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.219.3.2 Morphological diversity of benthic Nostocales (Cyanoprokaryota/Cyanobacteria) from the tropical rocky shores of Huatulco region, Oaxaca, México LAURA GONZÁLEZ-RESENDIZ1,2*, HILDA P. LEÓN-TEJERA1 & MICHELE GOLD-MORGAN1 1 Departamento de Biología Comparada, Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM). Coyoacán, Có- digo Postal 04510, P.O. Box 70–474, México, Distrito Federal (D.F.), México 2 Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México (UNAM). * Corresponding author (e–mail: [email protected]) Abstract The supratidal and intertidal zones are extreme biotopes. Recent surveys of the supratidal and intertidal fringe of the state of Oaxaca, Mexico, have shown that the cyanoprokaryotes are frequently the dominant forms and the heterocytous species form abundant and conspicuous epilithic growths. Five of the eight special morphotypes (Brasilonema sp., Myochrotes sp., Ophiothrix sp., Petalonema sp. and Calothrix sp.) from six localities described and discussed in this paper, are new reports for the tropical Mexican coast and the other three (Kyrtuthrix cf. maculans, Scytonematopsis cf. crustacea and Hassallia littoralis) extend their known distribution. Key words: Marine environment, stressful environment, Scytonemataceae, Rivulariaceae Introduction The rocky shore is a highly stressful habitat, due to the lack of nutrients, elevated temperatures and high desiccation related to tidal fluctuation (Nagarkar 2002). Previous works on this habitat report epilithic heterocytous species that are often dominant especially in the supratidal and intertidal fringes (Whitton & Potts 1979, Potts 1980; Nagarkar & Williams 1999, Nagarkar 2002, Diez et al. -
Érioderme Boréal (Erioderma Pedicellatum), Population De L’Atlantique, Au Canada
PROPOSITION Loi sur les espèces en péril Série de Programmes de rétablissement Programme de rétablissement modifié de l’érioderme boréal (Erioderma pedicellatum), population de l’Atlantique, au Canada Érioderme boréal, population de l’Atlantique 2018 Référence recommandée : Environnement et Changement climatique Canada. 2018. Programme de rétablissement modifié de l’érioderme boréal (Erioderma pedicellatum), population de l’Atlantique, au Canada [Proposition]. Série de Programmes de rétablissement de la Loi sur les espèces en péril. Environnement et Changement climatique Canada, Ottawa. viii + 52 p. Pour télécharger le présent programme de rétablissement ou pour obtenir un complément d’information sur les espèces en péril, incluant les rapports de situation du Comité sur la situation des espèces en péril au Canada (COSEPAC), les descriptions de la résidence, les plans d’action et d’autres documents connexes portant sur le rétablissement, veuillez consulter le Registre public des espèces en péril1. Illustration de la couverture : Érioderme boréal sur un sapin baumier, côte est, Nouvelle-Écosse. Photo par Robert Cameron, utilisée avec autorisation. Also available in English under the title "Amended Recovery Strategy for the Boreal Felt Lichen (Erioderma pedicellatum), Atlantic population, in Canada [Proposed]" © Sa Majesté la Reine du chef du Canada, représentée par la ministre de l’Environnement et du Changement climatique, 2018. Tous droits réservés. ISBN No de catalogue Le contenu du présent document (à l’exception des illustrations) -
Archive of SID
Archive of SID رﺳﺘﻨﯿﻬﺎ Rostaniha 18(2): 210–221 (2017) (1396) 210 -221 :(2)18 Molecular phylogenetic and morphometric evaluation of Calothrix sp. N42 and Scytonema sp. N11 Received: 02.10.2017 / Accepted: 18.12.2017 Bahareh Nowruzi: Assistant Prof., Department of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran ([email protected], [email protected]) Hossein Fahimi: Assistant Prof., Department of Molecular and Cellular Sciences, Faculty of Advanced Sciences & Technology, Pharmaceutical Sciences Branch, Islamic Azad University (IAUPS), Tehran, Iran Neda Ordodari: MSc Student, Pharmaceutical Sciences Research Center, Pharmaceutical Sciences Branch, Islamic Azad University (IAUPS), Tehran, Iran Abstract The taxonomy of cyanobacteria has been substantially modified in the last few decades, particularly after application of modern ultra structural and molecular methods. The present research, therefore, aimed to investigate, through a polyphasic approach, the differences in morphological and genotypic features of two cyanobacteria strains isolated from different agricultural and freshwaters areas in Kermanshah province (W Iran). In fact, identification and taxonomy of both Calothrix sp. N42 and Scytonema sp. N11 was problematic and confusing. Challenges arose when the two strains seemed to be Calothrix, because of early unbranched filaments, narrow cells and ending by heterocysts. Along with the progression of growth, branching arise. Therefore, molecular analysis was made and morphometric and genetic (16S rRNA) data were used to characterize the strains in liquid suspension cultures and solid media under photoautotrophic conditions. The results of sequencing the 16S rRNA fragment and phylogenetic comparison strongly indicated that, two strains fall into different phylogenetic clusters. They were named as Calothrix sp.