Concept Mining Via Embedding
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Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding
applied sciences Article Information Extraction from Electronic Medical Records Using Multitask Recurrent Neural Network with Contextual Word Embedding Jianliang Yang 1 , Yuenan Liu 1, Minghui Qian 1,*, Chenghua Guan 2 and Xiangfei Yuan 2 1 School of Information Resource Management, Renmin University of China, 59 Zhongguancun Avenue, Beijing 100872, China 2 School of Economics and Resource Management, Beijing Normal University, 19 Xinjiekou Outer Street, Beijing 100875, China * Correspondence: [email protected]; Tel.: +86-139-1031-3638 Received: 13 August 2019; Accepted: 26 August 2019; Published: 4 September 2019 Abstract: Clinical named entity recognition is an essential task for humans to analyze large-scale electronic medical records efficiently. Traditional rule-based solutions need considerable human effort to build rules and dictionaries; machine learning-based solutions need laborious feature engineering. For the moment, deep learning solutions like Long Short-term Memory with Conditional Random Field (LSTM–CRF) achieved considerable performance in many datasets. In this paper, we developed a multitask attention-based bidirectional LSTM–CRF (Att-biLSTM–CRF) model with pretrained Embeddings from Language Models (ELMo) in order to achieve better performance. In the multitask system, an additional task named entity discovery was designed to enhance the model’s perception of unknown entities. Experiments were conducted on the 2010 Informatics for Integrating Biology & the Bedside/Veterans Affairs (I2B2/VA) dataset. Experimental results show that our model outperforms the state-of-the-art solution both on the single model and ensemble model. Our work proposes an approach to improve the recall in the clinical named entity recognition task based on the multitask mechanism. -
The History and Recent Advances of Natural Language Interfaces for Databases Querying
E3S Web of Conferences 229, 01039 (2021) https://doi.org/10.1051/e3sconf/202122901039 ICCSRE’2020 The history and recent advances of Natural Language Interfaces for Databases Querying Khadija Majhadi1*, and Mustapha Machkour1 1Team of Engineering of Information Systems, Faculty of Sciences Agadir, Morocco Abstract. Databases have been always the most important topic in the study of information systems, and an indispensable tool in all information management systems. However, the extraction of information stored in these databases is generally carried out using queries expressed in a computer language, such as SQL (Structured Query Language). This generally has the effect of limiting the number of potential users, in particular non-expert database users who must know the database structure to write such requests. One solution to this problem is to use Natural Language Interface (NLI), to communicate with the database, which is the easiest way to get information. So, the appearance of Natural Language Interfaces for Databases (NLIDB) is becoming a real need and an ambitious goal to translate the user’s query given in Natural Language (NL) into the corresponding one in Database Query Language (DBQL). This article provides an overview of the state of the art of Natural Language Interfaces as well as their architecture. Also, it summarizes the main recent advances on the task of Natural Language Interfaces for databases. 1 Introduction of recent Natural Language Interfaces for databases by highlighting the architectures they used before For several years, databases have become the preferred concluding and giving some perspectives on our future medium for data storage in all information management work. -
Text Mining Course for KNIME Analytics Platform
Text Mining Course for KNIME Analytics Platform KNIME AG Copyright © 2018 KNIME AG Table of Contents 1. The Open Analytics Platform 2. The Text Processing Extension 3. Importing Text 4. Enrichment 5. Preprocessing 6. Transformation 7. Classification 8. Visualization 9. Clustering 10. Supplementary Workflows Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 2 Noncommercial-Share Alike license 1 https://creativecommons.org/licenses/by-nc-sa/4.0/ Overview KNIME Analytics Platform Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 3 Noncommercial-Share Alike license 1 https://creativecommons.org/licenses/by-nc-sa/4.0/ What is KNIME Analytics Platform? • A tool for data analysis, manipulation, visualization, and reporting • Based on the graphical programming paradigm • Provides a diverse array of extensions: • Text Mining • Network Mining • Cheminformatics • Many integrations, such as Java, R, Python, Weka, H2O, etc. Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 4 Noncommercial-Share Alike license 2 https://creativecommons.org/licenses/by-nc-sa/4.0/ Visual KNIME Workflows NODES perform tasks on data Not Configured Configured Outputs Inputs Executed Status Error Nodes are combined to create WORKFLOWS Licensed under a Creative Commons Attribution- ® Copyright © 2018 KNIME AG 5 Noncommercial-Share Alike license 3 https://creativecommons.org/licenses/by-nc-sa/4.0/ Data Access • Databases • MySQL, MS SQL Server, PostgreSQL • any JDBC (Oracle, DB2, …) • Files • CSV, txt -
Application of Machine Learning in Automatic Sentiment Recognition from Human Speech
Application of Machine Learning in Automatic Sentiment Recognition from Human Speech Zhang Liu Ng EYK Anglo-Chinese Junior College College of Engineering Singapore Nanyang Technological University (NTU) Singapore [email protected] Abstract— Opinions and sentiments are central to almost all human human activities and have a wide range of applications. As activities and have a wide range of applications. As many decision many decision makers turn to social media due to large makers turn to social media due to large volume of opinion data volume of opinion data available, efficient and accurate available, efficient and accurate sentiment analysis is necessary to sentiment analysis is necessary to extract those data. Business extract those data. Hence, text sentiment analysis has recently organisations in different sectors use social media to find out become a popular field and has attracted many researchers. However, consumer opinions to improve their products and services. extracting sentiments from audio speech remains a challenge. This project explores the possibility of applying supervised Machine Political party leaders need to know the current public Learning in recognising sentiments in English utterances on a sentiment to come up with campaign strategies. Government sentence level. In addition, the project also aims to examine the effect agencies also monitor citizens’ opinions on social media. of combining acoustic and linguistic features on classification Police agencies, for example, detect criminal intents and cyber accuracy. Six audio tracks are randomly selected to be training data threats by analysing sentiment valence in social media posts. from 40 YouTube videos (monologue) with strong presence of In addition, sentiment information can be used to make sentiments. -
D1.3 Deliverable Title: Action Ontology and Object Categories Type
Deliverable number: D1.3 Deliverable Title: Action ontology and object categories Type (Internal, Restricted, Public): PU Authors: Daiva Vitkute-Adzgauskiene, Jurgita Kapociute, Irena Markievicz, Tomas Krilavicius, Minija Tamosiunaite, Florentin Wörgötter Contributing Partners: UGOE, VMU Project acronym: ACAT Project Type: STREP Project Title: Learning and Execution of Action Categories Contract Number: 600578 Starting Date: 01-03-2013 Ending Date: 30-04-2016 Contractual Date of Delivery to the EC: 31-08-2015 Actual Date of Delivery to the EC: 04-09-2015 Page 1 of 16 Content 1. EXECUTIVE SUMMARY .................................................................................................................... 2 2. INTRODUCTION .............................................................................................................................. 3 3. OVERVIEW OF THE ACAT ONTOLOGY STRUCTURE ............................................................................ 3 4. OBJECT CATEGORIZATION BY THEIR SEMANTIC ROLES IN THE INSTRUCTION SENTENCE .................... 9 5. HIERARCHICAL OBJECT STRUCTURES ............................................................................................. 13 6. MULTI-WORD OBJECT NAME RESOLUTION .................................................................................... 15 7. CONCLUSIONS AND FUTURE WORK ............................................................................................... 16 8. REFERENCES ................................................................................................................................ -
Text KM & Text Mining
Text KM & Text Mining An Introduction to Managing Knowledge in Unstructured Natural Language Documents Dekai Wu HKUST Human Language Technology Center Department of Computer Science and Engineering University of Science and Technology Hong Kong http://www.cs.ust.hk/~dekai © 2008 Dekai Wu Lecture Objectives Introduction to the concept of Text KM and Text Mining (TM) How to exploit knowledge encoded in text form How text mining is different from data mining Introduction to the various aspects of Natural Language Processing (NLP) Introduction to the different tools and methods available for TM HKUST Human Language Technology Center © 2008 Dekai Wu Textual Knowledge Management Text KM oversees the storage, capturing and sharing of knowledge encoded in unstructured natural language documents 80-90% of an organization’s explicit knowledge resides in plain English (Chinese, Japanese, Spanish, …) documents – not in structured relational databases! Case libraries are much more reasonably stored as natural language documents, than encoded into relational databases Most knowledge encoded as text will never pass through explicit KM processes (eg, email) HKUST Human Language Technology Center © 2008 Dekai Wu Text Mining Text Mining analyzes unstructured natural language documents to extract targeted types of knowledge Extracts knowledge that can then be inserted into databases, thereby facilitating structured data mining techniques Provides a more natural user interface for entering knowledge, for both employees and developers Reduces -
A Meaningful Information Extraction System for Interactive Analysis of Documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère
A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère To cite this version: Julien Maitre, Michel Ménard, Guillaume Chiron, Alain Bouju, Nicolas Sidère. A meaningful infor- mation extraction system for interactive analysis of documents. International Conference on Docu- ment Analysis and Recognition (ICDAR 2019), Sep 2019, Sydney, Australia. pp.92-99, 10.1109/IC- DAR.2019.00024. hal-02552437 HAL Id: hal-02552437 https://hal.archives-ouvertes.fr/hal-02552437 Submitted on 23 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A meaningful information extraction system for interactive analysis of documents Julien Maitre, Michel Menard,´ Guillaume Chiron, Alain Bouju, Nicolas Sidere` L3i, Faculty of Science and Technology La Rochelle University La Rochelle, France fjulien.maitre, michel.menard, guillaume.chiron, alain.bouju, [email protected] Abstract—This paper is related to a project aiming at discover- edge and enrichment of the information. A3: Visualization by ing weak signals from different streams of information, possibly putting information into perspective by creating representa- sent by whistleblowers. The study presented in this paper tackles tions and dynamic dashboards. -
Span Model for Open Information Extraction on Accurate Corpus
Span Model for Open Information Extraction on Accurate Corpus Junlang Zhan1,2,3, Hai Zhao1,2,3,∗ 1Department of Computer Science and Engineering, Shanghai Jiao Tong University 2 Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, China 3 MoE Key Lab of Artificial Intelligence, AI Institute, Shanghai Jiao Tong University [email protected], [email protected] Abstract Sentence Repeat customers can purchase luxury items at reduced prices. Open Information Extraction (Open IE) is a challenging task Extraction (A0: repeat customers; can purchase; especially due to its brittle data basis. Most of Open IE sys- A1: luxury items; A2: at reduced prices) tems have to be trained on automatically built corpus and evaluated on inaccurate test set. In this work, we first alle- viate this difficulty from both sides of training and test sets. Table 1: An example of Open IE in a sentence. The extrac- For the former, we propose an improved model design to tion consists of a predicate (in bold) and a list of arguments, more sufficiently exploit training dataset. For the latter, we separated by semicolons. present our accurately re-annotated benchmark test set (Re- OIE2016) according to a series of linguistic observation and analysis. Then, we introduce a span model instead of previ- ous adopted sequence labeling formulization for n-ary Open long short-term memory (BiLSTM) labeler and BIO tagging IE. Our newly introduced model achieves new state-of-the-art scheme which built the first supervised learning model for performance on both benchmark evaluation datasets. -
Knowledge-Powered Deep Learning for Word Embedding
Knowledge-Powered Deep Learning for Word Embedding Jiang Bian, Bin Gao, and Tie-Yan Liu Microsoft Research {jibian,bingao,tyliu}@microsoft.com Abstract. The basis of applying deep learning to solve natural language process- ing tasks is to obtain high-quality distributed representations of words, i.e., word embeddings, from large amounts of text data. However, text itself usually con- tains incomplete and ambiguous information, which makes necessity to leverage extra knowledge to understand it. Fortunately, text itself already contains well- defined morphological and syntactic knowledge; moreover, the large amount of texts on the Web enable the extraction of plenty of semantic knowledge. There- fore, it makes sense to design novel deep learning algorithms and systems in order to leverage the above knowledge to compute more effective word embed- dings. In this paper, we conduct an empirical study on the capacity of leveraging morphological, syntactic, and semantic knowledge to achieve high-quality word embeddings. Our study explores these types of knowledge to define new basis for word representation, provide additional input information, and serve as auxiliary supervision in deep learning, respectively. Experiments on an analogical reason- ing task, a word similarity task, and a word completion task have all demonstrated that knowledge-powered deep learning can enhance the effectiveness of word em- bedding. 1 Introduction With rapid development of deep learning techniques in recent years, it has drawn in- creasing attention to train complex and deep models on large amounts of data, in order to solve a wide range of text mining and natural language processing (NLP) tasks [4, 1, 8, 13, 19, 20]. -
Information Extraction Overview
INFORMATION EXTRACTION OVERVIEW Mary Ellen Okurowski Department of Defense. 9800 Savage Road, Fort Meade, Md. 20755 meokuro@ afterlife.ncsc.mil 1. DEFINITION OF INFORMATION outputs informafiou in Japanese. EXTRACTION Under ARPA sponsorship, research and development on information extraction systems has been oriented toward The information explosion of the last decade has placed evaluation of systems engaged in a series of specific increasing demands on processing and analyzing large application tasks [7][8]. The task has been template filling volumes of on-line data. In response, the Advanced for populating a database. For each task, a domain of Research Projects Agency (ARPA) has been supporting interest (i.e.. topic, for example joint ventures or research to develop a new technology called information microelectronics chip fabrication) is selected. Then this extraction. Information extraction is a type of document domain scope is narrowed by delineating the particular processing which capttnes and outputs factual information types of factual information of interest, specifically, the contained within a document. Similar to an information generic type of information to be extracted and the form of retrieval (lid system, an information extraction system the output of that information. This information need responds to a user's information need. Whereas an IR definition is called the template. The design of a template, system identifies a subset of documents in a large text which corresponds to the design of the database to be database or in a library scenario a subset of resources in a populated, resembles any form that you may fdl out. For library, an information extraction system identifies a subset example, certain fields in the template require normalizing of information within a document. -
Formal Concept Analysis in Knowledge Processing: a Survey on Applications ⇑ Jonas Poelmans A,C, , Dmitry I
Expert Systems with Applications 40 (2013) 6538–6560 Contents lists available at SciVerse ScienceDirect Expert Systems with Applications journal homepage: www.elsevier.com/locate/eswa Review Formal concept analysis in knowledge processing: A survey on applications ⇑ Jonas Poelmans a,c, , Dmitry I. Ignatov c, Sergei O. Kuznetsov c, Guido Dedene a,b a KU Leuven, Faculty of Business and Economics, Naamsestraat 69, 3000 Leuven, Belgium b Universiteit van Amsterdam Business School, Roetersstraat 11, 1018 WB Amsterdam, The Netherlands c National Research University Higher School of Economics, Pokrovsky boulevard, 11, 109028 Moscow, Russia article info abstract Keywords: This is the second part of a large survey paper in which we analyze recent literature on Formal Concept Formal concept analysis (FCA) Analysis (FCA) and some closely related disciplines using FCA. We collected 1072 papers published Knowledge discovery in databases between 2003 and 2011 mentioning terms related to Formal Concept Analysis in the title, abstract and Text mining keywords. We developed a knowledge browsing environment to support our literature analysis process. Applications We use the visualization capabilities of FCA to explore the literature, to discover and conceptually repre- Systematic literature overview sent the main research topics in the FCA community. In this second part, we zoom in on and give an extensive overview of the papers published between 2003 and 2011 which applied FCA-based methods for knowledge discovery and ontology engineering in various application domains. These domains include software mining, web analytics, medicine, biology and chemistry data. Ó 2013 Elsevier Ltd. All rights reserved. 1. Introduction mining, i.e. gaining insight into source code with FCA. -
Concept Maps Mining for Text Summarization
UNIVERSIDADE FEDERAL DO ESPÍRITO SANTO CENTRO TECNOLÓGICO DEPARTAMENTO DE INFORMÁTICA PROGRAMA DE PÓS-GRADUAÇÃO EM INFORMÁTICA Camila Zacché de Aguiar Concept Maps Mining for Text Summarization VITÓRIA-ES, BRAZIL March 2017 Camila Zacché de Aguiar Concept Maps Mining for Text Summarization Dissertação de Mestrado apresentada ao Programa de Pós-Graduação em Informática da Universidade Federal do Espírito Santo, como requisito parcial para obtenção do Grau de Mestre em Informática. Orientador (a): Davidson CurY Co-orientador: Amal Zouaq VITÓRIA-ES, BRAZIL March 2017 Dados Internacionais de Catalogação-na-publicação (CIP) (Biblioteca Setorial Tecnológica, Universidade Federal do Espírito Santo, ES, Brasil) Aguiar, Camila Zacché de, 1987- A282c Concept maps mining for text summarization / Camila Zacché de Aguiar. – 2017. 149 f. : il. Orientador: Davidson Cury. Coorientador: Amal Zouaq. Dissertação (Mestrado em Informática) – Universidade Federal do Espírito Santo, Centro Tecnológico. 1. Informática na educação. 2. Processamento de linguagem natural (Computação). 3. Recuperação da informação. 4. Mapas conceituais. 5. Sumarização de Textos. 6. Mineração de dados (Computação). I. Cury, Davidson. II. Zouaq, Amal. III. Universidade Federal do Espírito Santo. Centro Tecnológico. IV. Título. CDU: 004 “Most of the fundamental ideas of science are essentially simple, and may, as a rule, be expressed in a language comprehensible to everyone.” Albert Einstein 4 Acknowledgments I would like to thank the manY people who have been with me over the years and who have contributed in one way or another to the completion of this master’s degree. Especially my advisor, Davidson Cury, who in a constructivist way disoriented me several times as a stimulus to the search for new answers.