Kinesin-5 Is a Microtubule Polymerase
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UCSD MOLECULE PAGES Doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All Rights Reserved
UCSD MOLECULE PAGES doi:10.6072/H0.MP.A002549.01 Volume 1, Issue 2, 2012 Copyright UC Press, All rights reserved. Review Article Open Access WAVE2 Tadaomi Takenawa1, Shiro Suetsugu2, Daisuke Yamazaki3, Shusaku Kurisu1 WASP family verprolin-homologous protein 2 (WAVE2, also called WASF2) was originally identified by its sequence similarity at the carboxy-terminal VCA (verprolin, cofilin/central, acidic) domain with Wiskott-Aldrich syndrome protein (WASP) and N-WASP (neural WASP). In mammals, WAVE2 is ubiquitously expressed, and its two paralogs, WAVE1 (also called suppressor of cAMP receptor 1, SCAR1) and WAVE3, are predominantly expressed in the brain. The VCA domain of WASP and WAVE family proteins can activate the actin-related protein 2/3 (Arp2/3) complex, a major actin nucleator in cells. Proteins that can activate the Arp2/3 complex are now collectively known as nucleation-promoting factors (NPFs), and the WASP and WAVE families are a founding class of NPFs. The WAVE family has an amino-terminal WAVE homology domain (WHD domain, also called the SCAR homology domain, SHD) followed by the proline-rich region that interacts with various Src-homology 3 (SH3) domain proteins. The VCA domain located at the C-terminus. WAVE2, like WAVE1 and WAVE3, constitutively forms a huge heteropentameric protein complex (the WANP complex), binding through its WHD domain with Abi-1 (or its paralogs, Abi-2 and Abi-3), HSPC300 (also called Brick1), Nap1 (also called Hem-2 and NCKAP1), Sra1 (also called p140Sra1 and CYFIP1; its paralog is PIR121 or CYFIP2). The WANP complex is recruited to the plasma membrane by cooperative action of activated Rac GTPases and acidic phosphoinositides. -
Yuri Gagarin Is Required for Actin, Tubulin and Basal Body Functions in Drosophila Spermatogenesis
1926 Research Article yuri gagarin is required for actin, tubulin and basal body functions in Drosophila spermatogenesis Michael J. Texada, Rebecca A. Simonette, Cassidy B. Johnson, William J. Deery and Kathleen M. Beckingham* Department of Biochemistry and Cell Biology, MS-140, Rice University, 6100 South Main Street, Houston, TX 77005, USA *Author for correspondence (e-mail: [email protected]) Accepted 20 March 2008 Journal of Cell Science 121, 1926-1936 Published by The Company of Biologists 2008 doi:10.1242/jcs.026559 Summary Males of the genus Drosophila produce sperm of remarkable the yuri mutant, late clusters of syncytial nuclei are deformed length. Investigation of giant sperm production in Drosophila and disorganized. The basal bodies are also mispositioned on melanogaster has demonstrated that specialized actin and the nuclei, and the association of a specialized structure, the microtubule structures play key roles. The gene yuri gagarin centriolar adjunct (CA), with the basal body is lost. Some of (yuri) encodes a novel protein previously identified through its these nuclear defects might underlie a further unexpected role in gravitaxis. A male-sterile mutation of yuri has revealed abnormality: sperm nuclei occasionally locate to the wrong ends roles for Yuri in the functions of the actin and tubulin structures of the spermatid cysts. The structure of the axonemes that grow of spermatogenesis. Yuri is a component of the motile actin cones out from the basal bodies is affected in the yuri mutant, that individualize the spermatids and is essential for their suggesting a possible role for the CA in axoneme formation. formation. Furthermore, Yuri is required for actin accumulation in the dense complex, a microtubule-rich structure on the sperm Key words: Drosophila, Spermatogenesis, Actin, Tubulin, Basal nuclei thought to strengthen the nuclei during elongation. -
The Kinesin Walk: a Dynamic Model with Elastically Coupled Heads
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 6775-6779, June 1996 Biophysics The kinesin walk: A dynamic model with elastically coupled heads IMRE DERENYI AND TAMA'S VICSEK Department of Atomic Physics, Eotvos University, Budapest, Puskin u 5-7, 1088 Hungary Communicated by Leo P. Kadanoff, University of Chicago, Chicago, IL, February 26, 1996 (received for review November 28, 1995) ABSTRACT Recently individual two-headed kinesin mol- of the related transport phenomena. These models (12-19), ecules have been studied in in vitro motility assays revealing a except that of Ajdari (20), consider cases in which the internal number of their peculiar transport properties. In this paper degree of freedom of the molecular motors is not taken into we propose a simple and robust model for the kinesin stepping account. The purpose of the present work is to define and process with elastically coupled Brownian heads that show all investigate a dynamic model for the kinesin walk that has an of these properties. The analytic and numerical treatment of internal degree of freedom and results in a full agreement with our model results in a very good fit to the experimental data the experimental data for the range of its parameters allowed and practically has no free parameters. Changing the values by the known estimates for the lower and upper bounds of ofthe parameters in the restricted range allowed by the related these parameters. experimental estimates has almost no effect on the shape of There are two basic classes of possible models for the the curves and results mainly in a variation of the zero load stepping of kinesin (21). -
Kinesin Motility Is Driven by Subdomain Dynamics Wonmuk Hwang1,2,3*, Matthew J Lang4,5*, Martin Karplus6,7*
RESEARCH ARTICLE Kinesin motility is driven by subdomain dynamics Wonmuk Hwang1,2,3*, Matthew J Lang4,5*, Martin Karplus6,7* 1Department of Biomedical Engineering, Texas A&M University, College Station, United States; 2Department of Materials Science & Engineering, Texas A&M University, College Station, United States; 3School of Computational Sciences, Korea Institute for Advanced Study, Seoul, Korea; 4Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, United States; 5Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, United States; 6Department of Chemistry and Chemical Biology, Harvard University, Cambridge, United States; 7Laboratoire de Chimie Biophysique, ISIS, Universite´ de Strasbourg, Strasbourg, France Abstract The microtubule (MT)-associated motor protein kinesin utilizes its conserved ATPase head to achieve diverse motility characteristics. Despite considerable knowledge about how its ATPase activity and MT binding are coupled to the motility cycle, the atomic mechanism of the core events remain to be found. To obtain insights into the mechanism, we performed 38.5 microseconds of all-atom molecular dynamics simulations of kinesin-MT complexes in different nucleotide states. Local subdomain dynamics were found to be essential for nucleotide processing. Catalytic water molecules are dynamically organized by the switch domains of the nucleotide binding pocket while ATP is torsionally strained. Hydrolysis products are ’pulled’ by switch-I, and a new ATP is ’captured’ by a concerted motion of the a0/L5/switch-I trio. The dynamic and wet kinesin-MT interface is tuned for rapid interactions while maintaining specificity. The proposed *For correspondence: mechanism provides the flexibility necessary for walking in the crowded cellular environment. [email protected] (WH); DOI: https://doi.org/10.7554/eLife.28948.001 [email protected] (MJL); [email protected] (MK) Competing interests: The authors declare that no Introduction competing interests exist. -
Cytoskeleton Cytoskeleton
CYTOSKELETON CYTOSKELETON The cytoskeleton is composed of three principal types of protein filaments: actin filaments, intermediate filaments, and microtubules, which are held together and linked to subcellular organelles and the plasma membrane by a variety of accessory proteins Muscle Contraction • Skeletal muscles are bundles of muscle fibers • Most of the cytoplasm consists of myofibrils, which are cylindrical bundles of two types of filaments: thick filaments of myosin (about 15 run in diameter) and thin filaments of actin (about 7 nm in diameter). • Each myofibril is organized as a chain of contractile units called sarcomeres, which are responsible for the striated appearance of skeletal and cardiac muscle. Structure of muscle cells Sarcomere • The ends of each sarcomere are defined by the Z disc. • Within each sarcomere, dark bands (called A bands because they are anisotropic when viewed with polarized light) alternate with light bands (called I bands for isotropic). • The I bands contain only thin (actin) filaments, whereas the A bands contain thick (myosin) filaments. • The myosin and actin filaments overlap in peripheral regions of the A band, whereas a middle region (called the H zone) contains only myosin. Muscle contraction • The basis for understanding muscle contraction is the sliding filament model, first proposed in 1954 both by Andrew Huxley and Ralph Niedergerke and by Hugh Huxley and Jean Hanson • During muscle contraction each sarcomere shortens, bringing the Z discs closer together. • There is no change in the width of the A band, but both the I bands and the H zone almost completely disappear. • These changes are explained by the actin and myosin filaments sliding past one another so that the actin filaments move into the A band and H zone. -
Myosin-Driven Actin-Microtubule Networks Exhibit Self-Organized Contractile Dynamics Gloria Lee1, Michael J
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.11.146662; this version posted June 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Myosin-driven actin-microtubule networks exhibit self-organized contractile dynamics Gloria Lee1, Michael J. Rust2, Moumita Das3, Ryan J. McGorty1, Jennifer L. Ross4, Rae M. Robertson-Anderson1* 1Department of Physics and Biophysics, University of San Diego, San Diego, CA 92110, USA 2Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, USA 3School of Physics and Astronomy, Rochester Institute of Technology, Rochester, NY 14623, USA 4Department of Physics, Syracuse University, Syracuse, NY 13244, USA Abstract The cytoskeleton is a dynamic network of proteins, including actin, microtubules, and myosin, that enables essential cellular processes such as motility, division, mechanosensing, and growth. While actomyosin networks are extensively studied, how interactions between actin and microtubules, ubiquitous in the cytoskeleton, influence actomyosin activity remains an open question. Here, we create a network of co-entangled actin and microtubules driven by myosin II. We combine dynamic differential microscopy, particle image velocimetry and particle-tracking to show that both actin and microtubules in the network undergo ballistic contraction with surprisingly indistinguishable characteristics. This controlled contractility is distinct from the faster turbulent motion and rupturing that active actin networks exhibit. Our results suggest that microtubules can enable self-organized myosin-driven contraction by providing flexural rigidity and enhanced connectivity to actin networks. -
Kinesin Kip2 Enhances Microtubule Growth in Vitro Through Length
SHORT REPORT Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe Anneke Hibbel1,6, Aliona Bogdanova1, Mohammed Mahamdeh2, Anita Jannasch1,3, Marko Storch4, Erik Scha¨ ffer3, Dimitris Liakopoulos5, Jonathon Howard2* 1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; 2Department of Molecular Biophysics & Biochemistry, Yale University, New Haven, United States; 3Zentrum fu¨ r Molekularbiologie der Pflanzen, Eberhard-Karls- Universita¨ t, Tu¨ bingen, Germany; 4Department of Life Sciences, Imperial College London, London, United Kingdom; 5CRBM-CRNS, Montpellier, France; 6Institute of Biochemistry, ETH Zurich, Zurich, Switzerland Abstract The size and position of mitotic spindles is determined by the lengths of their constituent microtubules. Regulation of microtubule length requires feedback to set the balance between growth and shrinkage. Whereas negative feedback mechanisms for microtubule length control, based on depolymerizing kinesins and severing proteins, have been studied extensively, positive feedback mechanisms are not known. Here, we report that the budding yeast kinesin Kip2 is a microtubule polymerase and catastrophe inhibitor in vitro that uses its processive motor activity as part of a feedback loop to further promote microtubule growth. Positive feedback arises because longer microtubules bind more motors, which walk to the ends where they reinforce *For correspondence: jonathon. growth and inhibit catastrophe. We propose that positive feedback, common in biochemical [email protected] pathways to switch between signaling states, can also be used in a mechanical signaling pathway to Competing interests: The switch between structural states, in this case between short and long polymers. authors declare that no DOI: 10.7554/eLife.10542.001 competing interests exist. -
Ciliary Dyneins and Dynein Related Ciliopathies
cells Review Ciliary Dyneins and Dynein Related Ciliopathies Dinu Antony 1,2,3, Han G. Brunner 2,3 and Miriam Schmidts 1,2,3,* 1 Center for Pediatrics and Adolescent Medicine, University Hospital Freiburg, Freiburg University Faculty of Medicine, Mathildenstrasse 1, 79106 Freiburg, Germany; [email protected] 2 Genome Research Division, Human Genetics Department, Radboud University Medical Center, Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands; [email protected] 3 Radboud Institute for Molecular Life Sciences (RIMLS), Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands * Correspondence: [email protected]; Tel.: +49-761-44391; Fax: +49-761-44710 Abstract: Although ubiquitously present, the relevance of cilia for vertebrate development and health has long been underrated. However, the aberration or dysfunction of ciliary structures or components results in a large heterogeneous group of disorders in mammals, termed ciliopathies. The majority of human ciliopathy cases are caused by malfunction of the ciliary dynein motor activity, powering retrograde intraflagellar transport (enabled by the cytoplasmic dynein-2 complex) or axonemal movement (axonemal dynein complexes). Despite a partially shared evolutionary developmental path and shared ciliary localization, the cytoplasmic dynein-2 and axonemal dynein functions are markedly different: while cytoplasmic dynein-2 complex dysfunction results in an ultra-rare syndromal skeleto-renal phenotype with a high lethality, axonemal dynein dysfunction is associated with a motile cilia dysfunction disorder, primary ciliary dyskinesia (PCD) or Kartagener syndrome, causing recurrent airway infection, degenerative lung disease, laterality defects, and infertility. In this review, we provide an overview of ciliary dynein complex compositions, their functions, clinical disease hallmarks of ciliary dynein disorders, presumed underlying pathomechanisms, and novel Citation: Antony, D.; Brunner, H.G.; developments in the field. -
Bee1, a Yeast Protein with Homology to Wiscott-Aldrich Syndrome Protein, Is Critical for the Assembly of Cortical Actin Cytoskel
Published February 10, 1997 Bee1, a Yeast Protein with Homology to Wiscott-Aldrich Syndrome Protein, Is Critical for the Assembly of Cortical Actin Cytoskeleton Rong Li Department of Cell Biology, Harvard Medical School, Boston, MA 02115 Abstract. Yeast protein, Bee1, exhibits sequence ho- associated patches, actin filaments in the buds of Dbee1 mology to Wiskott-Aldrich syndrome protein (WASP), cells form aberrant bundles that do not contain most of a human protein that may link signaling pathways to the cortical cytoskeletal components. It is significant the actin cytoskeleton. Mutations in WASP are the pri- that Dbee1 is the only mutation reported so far that mary cause of Wiskott-Aldrich syndrome, character- abolishes cortical actin patches in the bud. Bee1 protein ized by immuno-deficiencies and defects in blood cell is localized to actin patches and interacts with Sla1p, a morphogenesis. This report describes the character- Src homology 3 domain–containing protein previously ization of Bee1 protein function in budding yeast. Dis- implicated in actin assembly and function. Thus, Bee1 ruption of BEE1 causes a striking change in the organi- protein may be a crucial component of a cytoskeletal zation of actin filaments, resulting in defects in budding complex that controls the assembly and organization of Downloaded from and cytokinesis. Rather than assemble into cortically actin filaments at the cell cortex. roteins that are conserved between yeast and mam- In addition to the conserved actin-binding proteins, mals are likely to carry out fundamental cellular building blocks of protein interactions common to mam- P functions. The complete yeast genome database malian cytoskeletal and signaling molecules are also found on April 4, 2017 provides a facile route for the identification of these pro- in yeast. -
Cytoskeleton Markers
ptglab.com 1 CYTOSKELETON MARKERS www.ptglab.com Introduction The cytoskeleton is a three-dimensional network supporting and stabilizing the cell. All cells, even bacteria, have a type of cytoskeleton. It is responsible for the shape of the cell and its mechanical properties. Many dynamic cellular processes cooperate with the cytoskeleton, such as cell motion, cell division, intracellular transport, and cell signaling. Therefore, the cytoskeleton interacts with several cytoplasmic proteins or organelles. The cytoskeletal network is composed of three different protein structures named filaments: microtubules, microfilaments (actin), and intermediate filaments. These proteins form their own unique networks within the cell that have different interdependent functions. Main Functions of the Cytoskeleton Structural support Cell trafficking Transducer of mechanical signals Associated with several diseases Cellular signaling Cell Illustrating The Three Different Cytoskeleton Structure Proteins 2 Cytoskeleton Markers Most Popular Antibody Name Catalog Number Type Applications Cytoskeleton Markers ACTA2/alpha 5 23081-1-AP Rabbit Poly ELISA, IHC, IP, WB From Proteintech smooth muscle actin alpha Tubulin 4 11224-1-AP Rabbit Poly ELISA, FC, IF, IHC, IP, WB beta Actin 423 20536-1-AP Rabbit Poly ELISA, IF, IHC, WB beta Actin 399 60008-1-IG Mouse Mono ELISA, FC, IF, IHC, WB beta Tubulin 11 10068-1-AP Rabbit Poly ELISA, IF, IHC, IP, WB Cofilin 5 10960-1-AP Rabbit Poly ELISA, IF, IHC, WB Cytokeratin 17 specific 17516-1-AP Rabbit Poly ELISA, FC, IF, IHC, IP, WB Desmin 2 60226-1-IG Mouse Mono ELISA, IHC, WB GFAP 5 60190-1-IG Mouse Mono ELISA, IF, IHC, IP, WB Palladin 5 10853-1-AP Rabbit Poly ELISA, FC, IF, IHC, IP, WB Vimentin 54 10366-1-AP Rabbit Poly ELISA, FC, IF, IHC, WB 00 This number shows the amount of times our antibody has been cited in a publication. -
Loss of Mouse Cardiomyocyte Talin-1 and Talin-2 Leads to Β-1 Integrin
Loss of mouse cardiomyocyte talin-1 and talin-2 leads PNAS PLUS to β-1 integrin reduction, costameric instability, and dilated cardiomyopathy Ana Maria Mansoa,b,1, Hideshi Okadaa,b, Francesca M. Sakamotoa, Emily Morenoa, Susan J. Monkleyc, Ruixia Lia, David R. Critchleyc, and Robert S. Rossa,b,1 aDivision of Cardiology, Department of Medicine, University of California at San Diego School of Medicine, La Jolla, CA 92093; bCardiology Section, Department of Medicine, Veterans Administration Healthcare, San Diego, CA 92161; and cDepartment of Molecular Cell Biology, University of Leicester, Leicester LE1 9HN, United Kingdom Edited by Kevin P. Campbell, Howard Hughes Medical Institute, University of Iowa, Iowa City, IA, and approved May 30, 2017 (received for review January 26, 2017) Continuous contraction–relaxation cycles of the heart require ognized as key mechanotransducers, converting mechanical per- strong and stable connections of cardiac myocytes (CMs) with turbations to biochemical signals (5, 6). the extracellular matrix (ECM) to preserve sarcolemmal integrity. The complex of proteins organized by integrins has been most CM attachment to the ECM is mediated by integrin complexes commonly termed focal adhesions (FA) by studies performed in localized at the muscle adhesion sites termed costameres. The cells such as fibroblasts in a 2D environment. It is recognized that ubiquitously expressed cytoskeletal protein talin (Tln) is a compo- this structure is important for organizing and regulating the me- nent of muscle costameres that links integrins ultimately to the chanical and signaling events that occur upon cellular adhesion to sarcomere. There are two talin genes, Tln1 and Tln2. Here, we ECM (7, 8). -
Sperm Differentiation
International Journal of Molecular Sciences Review Sperm Differentiation: The Role of Trafficking of Proteins Maria E. Teves 1,* , Eduardo R. S. Roldan 2,*, Diego Krapf 3 , Jerome F. Strauss III 1 , Virali Bhagat 4 and Paulene Sapao 5 1 Department of Obstetrics and Gynecology, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] 2 Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), 28006 Madrid, Spain 3 Department of Electrical and Computer Engineering, Colorado State University, Fort Collins, CO 80523, USA; [email protected] 4 Department of Physiology and Biophysics, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] 5 Department of Chemistry, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] * Correspondence: [email protected] (M.E.T.); [email protected] (E.R.S.R.) Received: 4 March 2020; Accepted: 20 May 2020; Published: 24 May 2020 Abstract: Sperm differentiation encompasses a complex sequence of morphological changes that takes place in the seminiferous epithelium. In this process, haploid round spermatids undergo substantial structural and functional alterations, resulting in highly polarized sperm. Hallmark changes during the differentiation process include the formation of new organelles, chromatin condensation and nuclear shaping, elimination of residual cytoplasm, and assembly of the sperm flagella. To achieve these transformations, spermatids have unique mechanisms for protein trafficking that operate in a coordinated fashion. Microtubules and filaments of actin are the main tracks used to facilitate the transport mechanisms, assisted by motor and non-motor proteins, for delivery of vesicular and non-vesicular cargos to specific sites.