D614G UK Indian D614G B.1.1.7 B.1.617.2 GFP

MOI 10-3 Spike GFP Hoescht Spike Spike

Figure S1 Figure S2 Bamlanivimab Imdevimab RBD-85

Non infected

D614G

B.1.1.7

B1.351

B.1.617.2

Figure S3 a. Orléans Cohort: M6 POS

n=56

Sex

Female 29

Male 27

Age (Median; range) 53 (22;77)

Severity

Critical 13

Severe 15

Mild-Moderate 16

Asymptomatic 12

HIV 3

PCR 53

Anti-S (S-Flow) 56

Sampling days POS (median; 188 (114;205) range)

b. Strasbourg Cohort : M12 POS

Convalescent Vaccinated Convalescent

n=26 n=21

Sex

Female 21 18

Male 5 3

Age (median; range) 36 (24;60) 44 (23;62)

Severity

Critical 0 0

Severe 0 0

Mild-Moderate 26 21

Asymptomatic 0 0

PCR 26 21

Anti-S (Abott) 26 21

Vaccine

AstraZeneca 0 9

Pfizer 0 9

Moderna 0 3

Sampling days (median; range)

POS 330 (144;383) 359 (327;404)

Post Vaccine NA 24 (7;81)

Table S1 Orléans cohort: Vaccinated recipients

Pfizer AstraZeneca

n=16 n=12

Sex

Female 5 7

Male 11 5

Age (mediane; range) 60 (35;75) 38.5 (29;51)

BMI (Mediane; Range) 24.2 (20;34.5) 24.6 (21;33)

Immune deficiency 0 0

Previous COVID-19 0 0

Anti-N 0 0

1st shot Jan 4- 8, 2021 Feb 8 – March 4, 2021

2nd shot Jan 20 - Feb 5, 2021 NA

Sampling days post-vaccination (mediane; range)

W8 57 (53;84)

W10 69 (53;76)

W16 118 (116;124)

Table S2 GISAID_accession originating_lab submitting_lab authors 1.AO Universitaria 'S. Giovanni di Dio e Ruggi D'Aragona, Scuola Medica Salernitana' 1. Genome Research Hospital / 2.UOC di Virologia e Center for Health Microbiologia, Università della (CRGS) / 2. Laboratory Campania 'L. Vanvitelli' / 3.AO EPI_ISL_882760,EPI_ISL of Molecular Medicine Universitaria 'Federico II' Napoli Giorgio Giurato et al _954186 and Genomics(LMMGe) Hospital / 4.AORN 'San / 3. Center for Research Giuseppe Moscati' Avellino in Pure and Applied Hospital / 5.AO 'San Pio - Mathematics (CRMPA) presidio G. Rummo' Benevento Hospital / 6.AO 'Sant'Anna e San Sebastiano' Caserta Hospital / 1-Clinical and Experimental Pharmacology Lab, LR16SP02, National 1-Laboratory of Microbiology, Center of National Reference Lab, Charles EPI_ISL_699655,EPI_ISL Pharmacovigilance, Nicolle Hospital; 2-University of Ilhem Boutiba-Ben Boubaker et _733499,EPI_ISL_733500 University of Tunis El Tunis ElManar, Faculty of al ,EPI_ISL_763067 Manar, Tunis, Tunisia. 2- Medicine of Tunis, LR99ES09, Neurodegenerative Tunis, Tunisia diseases and psychiatric troubles, LR18SP03, Razi Hospital, University of Tunis El Manar, Tunis,

NSW Health Pathology - Institute of Clinical Pathology and Medical EPI_ISL_767931 4Cyte Pathology CIDM-PH et al. Research; Westmead Hospital; University of Sydney EPI_ISL_517625,EPI_ISL _517616,EPI_ISL_517629 ,EPI_ISL_517637,EPI_IS L_517645,EPI_ISL_51764 Academic Hospital Paramaribo Erasmus Medical Center Bas Oude Munnink et al 6,EPI_ISL_517648,EPI_I SL_517662,EPI_ISL_518 807,EPI_ISL_518815

EPI_ISL_498479,EPI_ISL _498485,EPI_ISL_498520 ,EPI_ISL_498524,EPI_IS L_498534,EPI_ISL_49854 ACT Pathology Schwessinger Lab Ashley Jones et al 3,EPI_ISL_498544,EPI_I SL_1208401,EPI_ISL_12 08402

EPI_ISL_735503 ACT Pathology Schwessinger Lab Robyn N Hall et al NSW Health Pathology - Institute of Clinical ACT Pathology, The Canberra Pathology and Medical EPI_ISL_427718 Gray K et al Hospital Research; Westmead Hospital; University of Sydney

EPI_ISL_1525226,EPI_IS L_1562451,EPI_ISL_1561 855,EPI_ISL_1562503,EP I_ISL_1649291,EPI_ISL_ 1649351,EPI_ISL_168573 Centers for Disease 0,EPI_ISL_1689967,EPI_I Control and Prevention SL_1736936,EPI_ISL_18 Aegis Sciences Corporation Division of Viral Dakota Howard et al 37612,EPI_ISL_1836347, Diseases, Pathogen EPI_ISL_2000472,EPI_IS Discovery L_1995160,EPI_ISL_1996 453,EPI_ISL_1996867,EP I_ISL_2040187,EPI_ISL_ 2040461,EPI ISL 203913

Institute of Life Sciences - EPI_ISL_1663516 AIIMS, Patna Sunil K. Raghav et al INSACOG EPI_ISL_500781,EPI_ISL Akershus University Hospital, Norwegian Institute of _2007357,EPI_ISL_21427 Department for Microbiology and Public Health, Kathrine Stene-Johansen et al 88 Infectious Disease Control Department of Virology

Pathogen Discovery, Respiratory Viruses Alabama Department of Public Branch, Division of Viral EPI_ISL_509688 Health Bureau of Clinical Ying Tao et al Diseases, Centers for Laboratories Disease Control and Prevention

Chen J et al with Alaska State Virology EPI_ISL_528530 Alaska State Virology Laboratory Pathogenomics group Dagdag Laboratory R et al EPI_ISL_586258,EPI_ISL Alaska State Virology Alaska State Virology Laboratory Jack Chen et al _586262 Laboratory

EPI_ISL_911693,EPI_ISL _1039732,EPI_ISL_10397 Alaska State Virology Alaska State Virology Laboratory Stephanie DeRonde et al 16,EPI_ISL_1049507,EPI Laboratory _ISL_1675113

EPI_ISL_805733,EPI_ISL Alberta Precision Labs Alberta Precision Labs (APL) Gordon P et al _805749,EPI_ISL_806372 (APL) CSIR-Institute of All India Institute of Medical EPI_ISL_2100700 Genomics and Pooja Sharma* et al Sciences, Ansari Nagar Delhi Integrative Biology

Al-Quds Nutrition and Al-Quds Nutrition and Health Health Research EPI_ISL_739661 Research Institute, Al-Quds Nasereddin et al Institute, Al-Quds University University

Alsafar - Khalifa University Abu Alsafar - Khalifa EPI_ISL_528707 Andreas Henschel et al Dhabi University Abu Dhabi Altius Institute for Biomedical EPI_ISL_1015796 Seattle Flu Study Deborah A. Nickerson et al Sciences

AMBULATORIO MEDICO DE Instituto Butantan / EPI_ISL_1445266 ESPECIALIDADES DE Dimas Tadeu Covas et al Mendelics PERUIBE

KRISP, KZN Research EPI_ISL_467455 AMPATH-DBN Innovation and Giandhari J et al Sequencing Platform Institute of Tropical EPI_ISL_1165068 Anwar Medika General Hospital Disease, Universitas Jezzy R Dewantari et al Airlangga

Pathogen Discovery, Respiratory Viruses AR Dept. of Health-Public Health Branch, Division of Viral EPI_ISL_576196 Ying Tao et al Lab Diseases, Centers for Disease Control and Prevention

Inciensa, Instituto Costarricense de EPI_ISL_770026 Area De Salud Catedral Noreste Investigación y Francisco Duarte et al Enseñanza en Nutrición y Salud Inciensa, Instituto Costarricense de EPI_ISL_770014 Area De Salud Curridabat 2 Investigación y Francisco Duarte et al Enseñanza en Nutrición y Salud

Inciensa, Instituto Costarricense de EPI_ISL_512662,EPI_ISL Area De Salud La Cruz Investigación y Francisco Duarte et al _527760,EPI_ISL_770003 Enseñanza en Nutrición y Salud

Inciensa, Instituto AREA DE SALUD MATA Costarricense de EPI_ISL_1196423 REDONDA-HOSPITAL - Investigación y Francisco Duarte et al CLINICA DR. MORENO CAÑAS Enseñanza en Nutrición y Salud Inciensa, Instituto Costarricense de EPI_ISL_770005 Area De Salud Moravia Investigación y Francisco Duarte et al Enseñanza en Nutrición y Salud

Inciensa, Instituto Costarricense de EPI_ISL_1827544 AREA DE SALUD SANTA CRUZ Investigación y Francisco Duarte et al Enseñanza en Nutrición y Salud

Area of Virology, Area of Virology, Serology and Serology and Virology EPI_ISL_500657,EPI_ISL Virology Division (SAViD), New Division (SAViD), New Rawlinson et al _500703,EPI_ISL_509522 South Wales Health Pathology South Wales Health Randwick Pathology Randwick EPI_ISL_678310,EPI_ISL _678312,EPI_ISL_678386 ,EPI_ISL_1005538,EPI_I Virology Research SL_1005536,EPI_ISL_12 Laboratory; Area of Area of Virology, Serology and 93047,EPI_ISL_1494721, Virology, Serology and Virology Division (SAViD), New EPI_ISL_1543925,EPI_IS Virology Division Foster et al South Wales Health Pathology L_1615598,EPI_ISL_1615 (SAViD), New South Randwick 596,EPI_ISL_1615595,EP Wales Health Pathology I_ISL_1633353,EPI_ISL_ Randwick 1633348,EPI_ISL_191119 1,EPI_ISL_1911189

Pathogen Discovery, Respiratory Viruses Arizona Department of Health Branch, Division of Viral EPI_ISL_406223 Ying Tao et al Services Diseases, Centers for Disease Control and Prevention

Arizona State Public Health Arizona State Public EPI_ISL_978405 Trung Huynh et al Laboratory Health Laboratory Armed Forces Institute of Genomic Research Lab, Md. Murshed Hasan Sarkar et EPI_ISL_1595843 Pathology (AFIP), Dhaka BCSIR al Cantonment

Armed Forces Institute of Genomic Research Lab, Mohammad Mizanur Rahman et EPI_ISL_1615663 Pathology (AFIP), Dhaka BCSIR al Cantonment

Armed Forces Institute of Genomic Research Lab, EPI_ISL_1593860 Pathology (AFIP), Dhaka Susane Giti et al BCSIR Cantonment Giovanni Savarese et alEPI_ISL_1080712 Atlanta VA Medical CenterPathogen Discovery, Respiratory Viruses Branch, AMES Centro Division of Viral Diseases, RCGEB - MASA et al ASL Napoli 1 Centro Polidiagnostico Centers for Disease Control EPI_ISL_516431 Strumentale S.r.l. and PreventionYan Li et alEPI_ISL_1591248 Auckland HospitalInstitute of Environmental Science and Research (ESR)Matt Storey et alEPI ISL 413490

EPI_ISL_2103642,EPI_IS Clinical Microbiology, Infection Section for Molecular Björn Hallström et al L_2103689 Prevention and Control Diagnostics

Clinical Molecular Microbiology EPI_ISL_877630 Dirk Dittmer Razia Moorad et al Laboratory, UNC Hospital Kansas Health and EPI_ISL_2023324 Clinical Reference Laboratory Mike Grose et al Environmental Lab

EPI_ISL_1833679 Clinical Virology Clinical Bacteriology Tim Roloff et al

EPI_ISL_2035940 Clinical Virology Clinical Virology Wasfi Fares et al Clinical Virology Unit, Hadassah EPI_ISL_447408 Hebrew University Medical Stern Lab Stern Lab et al Center

Instituto de Virología- EPI_ISL_2151071 Clínica Meta L. Johana Madroñero et al Universidad El Bosque

CLINICA UC SAN CARLOS DE Instituto de Salud EPI_ISL_445361 Andrés E Castillo et al APOQUINDO Publica de Chile Instituto Nacional de Clinica Universitaria Medicina Salud- Dirección de EPI_ISL_1494958 Katherine Laiton-Donato et al Integral - Laboratorio Molecular Investigación en Salud Pública

Cliniques universitaires Saint- EPI_ISL_1599177 UCLouvain/IREC/MBLG Jean Ruelle et al Luc

CNR Virus des Infections EPI_ISL_676567,EPI_ISL CNR Virus des Infections Respiratoires - France Antonin Bal et al _1788257 Respiratoires - France SUD SUD Colorado Department of Colorado Department of Public EPI_ISL_1539438 Public Health and Laura Bankers et al Health and Environment Environment

Colorado Department of EPI_ISL_710321,EPI_ISL Colorado Department of Public Puplic Health and Laura Bankers et al _1038842 Health and Environment Environment

Colorado State University - Ebel Colorado State EPI_ISL_527466 Greg Ebel et al. Lab University - Ebel Lab Genomics and Discovery, Respiratory EPI_ISL_1169508,EPI_IS Commonwealth Healthcare Viruses Branch, Division L_1169518,EPI_ISL_1169 Krista Queen et al Center of Viral Diseases, 542 Centers for Disease Control and Prevention EPI_ISL_682300,EPI_ISL _682315,EPI_ISL_166043 1,EPI_ISL_1660428,EPI_I Communicable Disease Communicable Disease SL_1660424,EPI_ISL_16 Laboratory, Public Health Laboratory, Public Alwasti et al 60457,EPI_ISL_1660462, Directorate Health Directorate EPI_ISL_1660464,EPI_IS L_1660466 Communicable Disease Communicable Disease EPI_ISL_632250,EPI_ISL Laboratory, Public Health Laboratory, Public AlWasti et al _632284,EPI_ISL_632263 Directorate Health Directorate Instituto Nacional de Salud - Dirección de EPI_ISL_845620 compensar calle 63 Katherine Laiton-Donato et al Investigación en Salud Pública EPI_ISL_738246,EPI_ISL Connecticut Veterans' Affairs Grubaugh Lab - Yale Joseph Fauver et al _738312 Hospital School of Public Health EPI_ISL_1017597,EPI_IS Connecticut Veterans' Affairs Grubaugh Lab - Yale Mary Petrone et al L_1017613 Hospital School of Public Health EPI_ISL_1040821 CoVid WC Cape Town Metro NHLS/UCT Arash Iranzadeh et al EPI_ISL_910144,EPI_ISL CSIR-Centre for Cellular and CSIR-Centre for Cellular Payel Mukherjee et al _910281 Molecular Biology and Molecular Biology CSIR-Centre for Cellular and CSIR-Centre for Cellular EPI_ISL_539771 Pratheusa Maccha et al Molecular Biology and Molecular Biology CSIR-Centre for Cellular EPI_ISL_2156965,EPI_IS CSIR-Centre for Cellular and and Molecular Biology- Ara Sreenivas et al L_2156966 Molecular Biology INSACOG EPI_ISL_2156869,EPI_IS CSIR-Centre for Cellular CSIR-Centre for Cellular and L_2156882,EPI_ISL_2156 and Molecular Biology- Blessy B John et al Molecular Biology 946,EPI_ISL_2156951 INSACOG CSIR-Centre for Cellular EPI_ISL_2157041,EPI_IS CSIR-Centre for Cellular and and Molecular Biology- Lamuk Zaveri et al L_2157048 Molecular Biology INSACOG EPI_ISL_1838377,EPI_IS L_1838545,EPI_ISL_1838 552,EPI_ISL_1838604,EP CSIR-Centre for Cellular CSIR-Centre for Cellular and I_ISL_1838655,EPI_ISL_ and Molecular Biology- Payel Mukherjee et al Molecular Biology 1838670,EPI_ISL_183876 INSACOG 1,EPI_ISL_1838764,EPI_I SL_1838820 CSIR-Centre for Cellular EPI_ISL_2156990,EPI_IS CSIR-Centre for Cellular and and Molecular Biology- Tulasi Nagabandi et al L_2157061 Molecular Biology INSACOG EPI_ISL_1360316,EPI_IS CSIR-Centre for Cellular CSIR-National Environmental L_1360361,EPI_ISL_1916 and Molecular Biology - Ara Sreenivas et al Engineering Research Institute 473,EPI_ISL_1916475 INSACOG EPI_ISL_1360306,EPI_IS CSIR-Centre for Cellular CSIR-National Environmental L_1360329,EPI_ISL_1360 and Molecular Biology - Lamuk Zaveri et al Engineering Research Institute 330,EPI_ISL_1360338 INSACOG CSIR-Centre for Cellular EPI_ISL_1360304,EPI_IS CSIR-National Environmental and Molecular Biology - Onkar Kulkarni et al L_1360352 Engineering Research Institute INSACOG EPI_ISL_1360318,EPI_IS CSIR-Centre for Cellular CSIR-National Environmental L_1360317,EPI_ISL_1360 and Molecular Biology - Sofia Banu et al Engineering Research Institute 342,EPI_ISL_1360364 INSACOG Laboratório de Parasitologia Médica - Brazil-UK Centre for Arbovirus EPI_ISL_722139 DB Diagnosticos do Brasil Instituto de Medicina Discovery Diagnosis Genomics Tropical - Universidade et al de São Paulo Laboratório de Parasitologia Médica - EPI_ISL_804816 DB Diagnosticos do Brasil Instituto de Medicina Nuno Faria et al Tropical - Universidade de São Paulo Instituto de Medicina Samples: Nelson Gaburo Jr et EPI_ISL_476365 DB Diagnósticos do Brasil Tropical da Univesidade al de São Paulo Centers for Disease Control and Prevention DC Public Health Lab/ Dept. of EPI_ISL_2018399 Division of Viral Mili Sheth et al Forensic Sciences Diseases, Pathogen Discovery DC Public Health Lab/ DC Public Health Lab/ Dept. of EPI_ISL_1502075 Dept. of Forensic Janis Doss et al Forensic Sciences Sciences DC Public Health Lab/ DC Public Health Lab/ Dept. of EPI_ISL_1168445 Dept. of Forensic Scott Nguyen et al Forensic Sciences Sciences EPI_ISL_826923,EPI_ISL _826729,EPI_ISL_828668 ,EPI_ISL_828691,EPI_IS deCODE genetics deCODE genetics Daniel F Gudbjartsson et al L_829136,EPI_ISL_83019 4,EPI_ISL_829701 EPI_ISL_560406,EPI_ISL Delaware Public Health Delaware Public Health Lab Gregory Hovan et al _1137042 Lab EPI_ISL_693711,EPI_ISL Delaware Public Health Delaware Public Health Gregory Hovan et al _767006 Laboratory Laboratory CSIR-Institute of EPI_ISL_2100645 Delhi North District Genomics and Pooja Sharma* et al Integrative Biology Área de Secuenciación del Laboratorio de Virología del Hospital de Departamento de Biología y Niños Dr. Ricardo EPI_ISL_430802 genética molecular, IACA Gutierrez on behalf of Nabaes Jodar et al Laboratorios. 'Proyecto Argentino Interinstitucional de genomica de SARS-CoV- 2' (PAIS Consortium) EPI_ISL_1340750,EPI_IS L_1340751,EPI_ISL_1340 Departamento de Virologia, 752,EPI_ISL_1340753,EP Laboratory of Laboratorio Central de Salud I_ISL_1340754,EPI_ISL_ Respiratory Viruses and Pública, Avenida Venezuela y Paola Resende et al 1340755,EPI_ISL_134075 Measles, Oswaldo Cruz Teniente Escurra, Asunción, 8,EPI_ISL_1340759,EPI_I Institute, FIOCRUZ Paraguay SL_1340760,EPI_ISL_13 40761,EPI_ISL_1340764 Laboratoire des Département de Maladies Procédés de Criblage EPI_ISL_1137609 Infectieuses, CHU Farhat Moléculaire et Cellulaire- Souissi et al Hached Sousse, Tunisie Centre de Biotechnologie de Sfax Department for Molecular Charité Diagnostics, Centre for Medical Universitätsmedizin EPI_ISL_516930 Victor M Corman et al Microbiology, Institute of Public Berlin, Institut für Health of Montenegro Virologie Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_481380 for Public Health Research, Public Health Research, Ana Papkiauri et al National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_1914785 for Public Health Research, Public Health Research, Giorgi Gogoladze et al National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_763062,EPI_ISL for Public Health Research, Public Health Research, Giorgi Tomashvili et al _1914604 National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_470877,EPI_ISL for Public Health Research, Public Health Research, Gvantsa Brachveli et al _1048367 National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. EPI_ISL_471529,EPI_ISL Research, R. G. Lugar Center G. Lugar Center for _754181,EPI_ISL_192185 for Public Health Research, Public Health Research, Meri Pantsulaia et al 9,EPI_ISL_1914783 National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_754180 for Public Health Research, Public Health Research, Salome Javashvili et al National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. Department for Virology, Department for Virology, Molecular Biology and Molecular Biology and Genome Genome Research, R. Research, R. G. Lugar Center G. Lugar Center for EPI_ISL_1914578 for Public Health Research, Public Health Research, Tata Imnadze et al National Center for Disease National Center for Control and Public Health Disease Control and (NCDC) of Georgia. Public Health (NCDC) of Georgia. EPI_ISL_515085,EPI_ISL Department of Biochemistry, Cell WACCBIP, University of _515096,EPI_ISL_515103 Ngoi et al and Molecular Biology Ghana ,EPI_ISL_515105 Department of Department of Biochemistry, Cell Biochemistry, Cell and and Molecular Biology, West Molecular Biology, West EPI_ISL_944681,EPI_ISL African Centre for Cell Biology of African Centre for Cell Morang'a et al _944701 Infectious Pathogens Biology of Infectious (WACCBIP), University of Ghana Pathogens (WACCBIP), University of Ghana Department of Department of Biochemistry, Cell Biochemistry, Cell and and Molecular Biology, West Molecular Biology, West EPI_ISL_884850,EPI_ISL African Centre for Cell Biology of African Centre for Cell Ngoi et al _884838,EPI_ISL_884841 Infectious Pathogens Biology of Infectious (WACCBIP), University of Ghana Pathogens (WACCBIP), University of Ghana EPI_ISL_907075,EPI_ISL Department of Biology, Department of Biology, Abu-Ali et al _956332 University of Basrah University of Basrah EPI_ISL_484708,EPI_ISL _581664,EPI_ISL_661247 Department of Clinical GIGA Medical Genomics Keith Durkin et al ,EPI_ISL_722965,EPI_IS Microbiology L_737349 Department of Genetic Engineering and Biotechnology, Genomic Research Lab, Md. Murshed Hasan Sarkar et EPI_ISL_1805696 Shahjalal University of Science BCSIR al and Technology Laboratory of Genomics and Bioinformatics, EPI_ISL_1280136 Department of Genetics, Medirex Tatiana Sedláková et al Comenius University Science Park Department of Department of Healthcare Healthcare Biotechnology, National EPI_ISL_417444 Biotechnology, National Javed et al University of Sciences and University of Sciences Technology (NUST) and Technology (NUST) EPI_ISL_1018325,EPI_IS Department of Health L_1797619,EPI_ISL_1797 Department of Health Technology and 620,EPI_ISL_1797622,EP Technology and Informatics, The Informatics, The Hong Gilman Kit-Hang Siu et al I_ISL_1797623,EPI_ISL_ Hong Kong Polytechnic Kong Polytechnic 1797624,EPI_ISL_179762 University University 5,EPI_ISL_1797626 Department of Hygiene, Central Public Health Epidemiology and Medical Laboratory, National EPI_ISL_1920640 Statistics, Medical School, Gkikas Magiorkinis et al Public Health National and Kapodistrian Organization University of Athens National Reference Department of Infectious and Center for Viruses of EPI_ISL_410984 Tropical Diseases, Bichat Mélanie Albert et al Respiratory Infections, Claude Bernard Hospital, Paris Institut Pasteur, Paris Department of Infectious Department of Infectious EPI_ISL_1942010 Diseases, Kobe Institute of Diseases, Kobe Institute Ryohei Nomoto et al Health of Health Laboratory of Parasitic Diseases, Systems Department of Laboratory Genomics Section, EPI_ISL_1306140,EPI_IS Medicine, Clinical Center, National Institute of Allison Roder et al L_1306146 National Institutes of Health Allergy and Infectious Diseases, National Institutes of Health Bergthaler laboratory, Department of Laboratory EPI_ISL_934571,EPI_ISL CeMM Research Center Medicine, Division of Clinical _1008368,EPI_ISL_21371 for Molecular Medicine of Lukas Endler et al Virology, University of Medicine, 14 the Austrian Academy of Vienna Sciences EPI_ISL_447621,EPI_ISL _463007,EPI_ISL_534336 Microbial Genomics ,EPI_ISL_1010729,EPI_I Department of Laboratory Core Lab, National SL_1020316,EPI_ISL_10 Medicine, National Taiwan Taiwan University Shiou-Hwei Yeh et al 39160,EPI_ISL_1041957, University Hospital Centers of Genomic and EPI_ISL_1667469,EPI_IS Precision Medicine L_1667472 Department of Laboratory Department of EPI_ISL_477175 Medicine Tan Tock Seng Laboratory Medicine Tan Chen YYC et al Hospital Tock Seng Hospital EPI_ISL_648106,EPI_ISL _648667,EPI_ISL_648685 Department of Laboratory Department of ,EPI_ISL_648724,EPI_IS Medicine, Tan Tock Seng Laboratory Medicine, Chen YYC et al L_648782,EPI_ISL_64872 Hospital Tan Tock Seng Hospital 5 Department of Laboratory, Department of EPI_ISL_477170 Medicine Tan Tock Seng Laboratory Medicine Tan Chen YYC et al Hospital Tock Seng Hospital Department of Medical Department of Medical EPI_ISL_1678790,EPI_IS Microbiology & Infection Microbiology & Infection L_1678810,EPI_ISL_1678 prevention, Amsterdam prevention, Amsterdam Matthijs Welkers et al 636 University Medical Centers University Medical location AMC Centers location AMC Department of Medical Norwegian Institute of EPI_ISL_1919364 Microbiology - section Molde, Public Health, Kathrine Stene-Johansen et al Molde Hospital Department of Virology Department of Medical Department of Medical EPI_ISL_501215,EPI_ISL Microbiology, Faculty of Microbiology, University Malaya Yoong Min CHONG et al _501196 Medicine, University of Medical Centre Malaya Greek Genome Center, Biomedical Research EPI_ISL_1716719 Department of Microbiology Foundation of the Emmanouil Athanasiadis et al Academy of Athens (BRFAA) Institute of Molecular and Translational Medicine / Department of Microbiology, Laboratory of Faculty of Medicine and EPI_ISL_1745698 Experimental Medicine, Rastislav Slavkovský et al Dentistry, Palacky University and Faculty of Medicine and University Hospital Olomouc Dentistry, Palacky University Charité Department of Microbiology, EPI_ISL_1027639,EPI_IS Universitätsmedizin National Institute for Public Victor M Corman et al L_1027648 Berlin, Institut für Health of Kosova Virologie EPI_ISL_498270,EPI_ISL _497795,EPI_ISL_103437 Department of Department of Microbiology, The 3,EPI_ISL_1034641,EPI_I Microbiology, The Kelvin K.W. To et al University of Hong Kong SL_1034718,EPI_ISL_10 University of Hong Kong 55454,EPI_ISL_1197084 Bergthaler laboratory, CeMM Research Center Department of Microbiology, EPI_ISL_1008285 for Molecular Medicine of Lukas Endler et al University Innsbruck the Austrian Academy of Sciences EPI_ISL_463748,EPI_ISL Department of Molecular _1164627,EPI_ISL_11646 Department of Molecular Virology, Cyprus Institute 28,EPI_ISL_1164644,EPI Virology, Cyprus Institute of Jan Richter et al of Neurology and _ISL_1164704,EPI_ISL_1 Neurology and Genetics Genetics 164673,EPI_ISL_1164716 Department of Pathology, School Genetics Research EPI_ISL_594187,EPI_ISL of Medicine, Imam Khomeini Center, University of Zohreh Fattahi et al _596452,EPI_ISL_596455 Hospital, Tehran University of Social Welfare and Medical Sciences Rehabilitation Sciences National Institute of Department of Public Health Infectious Diseases-Prof. EPI_ISL_2099869 Corina Casangiu et al Bucharest Dr. Matei Bals Molecular Diagnostics Laboratory Department of Public Department of Public Health Health Microbiology EPI_ISL_1034300,EPI_IS Microbiology Ljubljana, National Ljubljana, National José Gonçalves et al L_1289910 Laboratory for Health, Laboratory for Health, Environment and Food Environment and Food Department of Public Department of Public Health Health Microbiology Microbiology Ljubljana, National EPI_ISL_2032161 Ljubljana, National Tom Koritnik et al Laboratory for Health, Laboratory for Health, Environment and Food Environment and Food Department of Respiratory and other Department of Respiratory and Viral Infections of other Viral Infections of L.V.Gromashevsky EPI_ISL_582509 L.V.Gromashevsky Institute of Alla Mironenko et al Institute of Epidemiology Epidemiology & Infectious & Infectious Diseases Diseases NAMS of Ukraine NAMS of Ukraine, JSC "Farmak" Department of Respiratory and other Department of Respiratory and Viral Infections of other Viral Infections of L.V.Gromashevsky EPI_ISL_1122014 L.V.Gromashevsky Institute of Alla Mironenko et al Institute of Epidemiology Epidemiology & Infectious & Infectious Diseases Diseases NAMS of Ukrain NAMS of Ukrain, JSC "Farmak" Department of Respiratory & Other Viral Department of Respiratory & Infections of L.V. Other Viral Infections of L.V. EPI_ISL_576147,EPI_ISL Gromashevsky Institute Gromashevsky Institute of Alla Mironenko et al _576149 of Epidemiology & Epidemiology & Infectious Infectious Diseases Diseases NAMS of Ukraine NAMS of Ukraine, JSC "Farmak" EPI_ISL_450200 Department of Virology Department of Virology Boehmer et al EPI_ISL_1385786,EPI_IS L_1385794,EPI_ISL_1397 960,EPI_ISL_1406394,EP Department of Virology Department of Virology Massab Umair et al I_ISL_1385791,EPI_ISL_ 1385784,EPI_ISL_171051 0,EPI_ISL_1732274 EPI_ISL_732642,EPI_ISL _737211,EPI_ISL_757291 ,EPI_ISL_757339,EPI_IS L_757378,EPI_ISL_86205 Department of Virology and Department of Virology, 5,EPI_ISL_862062,EPI_I Immunology, University of Faculty of Medicine, Teemu Smura et al SL_862093,EPI_ISL_108 Helsinki and Helsinki University University of Helsinki, 2032,EPI_ISL_1219740,E Hospital, Huslab Finland Helsinki, Finland PI_ISL_1231217,EPI_ISL _1496876,EPI_ISL_18422 57 Department of Virology III, Pathogen Genomics EPI_ISL_407084 National Institute of Infectious Center, National Institute Tsuyoshi Sekizuka et al Diseases of Infectious Diseases Department of Virology, Pitié- Department of Virology, EPI_ISL_1015173 Valentin Leducq et al Salpêtrière hospital Pitié-Salpêtrière hospital Department of Virology, Principal EPI_ISL_855565,EPI_ISL Bundeswehr Institute of Military Hospital of Instruction of Susann Handrick et al _855572 Microbiology Tunis EPI_ISL_929069,EPI_ISL _1890934,EPI_ISL_18762 78,EPI_ISL_1868349,EPI _ISL_1872528,EPI_ISL_1 869673,EPI_ISL_1885850 ,EPI_ISL_1871129,EPI_I SL_1885762,EPI_ISL_18 Department of Virus and 74455,EPI_ISL_1880910, Microbiological Special Danish Covid-19 Genome Aalborg University EPI_ISL_2027204,EPI_IS Diagnostics, Statens Serum Consortium et al L_2026084,EPI_ISL_2026 Institut, Copenhagen, Denmark 527,EPI_ISL_2026828,EP I_ISL_2028113,EPI_ISL_ 2027848,EPI_ISL_202484 8,EPI_ISL_2025094,EPI_I SL_2024994,EPI_ISL_20 24762 Department of Virus and Albertsen Lab, EPI_ISL_670146,EPI_ISL Microbiological Special Department of Chemistry Danish Covid-19 Genome _714931 Diagnostics, Statens Serum and Bioscience, Aalborg Consortium et al Institut, Copenhagen, Denmark University, Denmark Department of Virus and Microbiological Special Albertsen lab, Diagnostics, Statens Serum Department of Chemistry EPI_ISL_429450 Rasmus Kirkegaard et al Institut, Copenhagen, Denmark, and Bioscience, Aalborg Artillerivej 5, 2300 Copenahgen University, Denmark S Department of Virus and Albertsen lab, Microbiological Special Department of Chemistry Danish Covid-19 Genome EPI_ISL_618919 Diagnostics, Statens Serum and Bioscience, Aalborg Consortia et al Institut, Denmark University, Denmark Dept. of Microbiology Dept. of Microbiology and EPI_ISL_1118134,EPI_IS and Infection Control, Infection Control, Akershus Hege Vangstein Aamot et al L_1994923 Akershus University University Hospital HF Hospital HF Pathogen Genomics EPI_ISL_410532,EPI_ISL Dept. of Pathology, National Center, National Institute Tsuyoshi Sekizuka et al _410531 Institute of Infectious Diseases of Infectious Diseases Pathogen Genomics Dept. of Virology III, National EPI_ISL_408667 Center, National Institute Tsuyoshi Sekizuka et al Institute of Infectious Diseases of Infectious Diseases Designated Reference Institute EPI_ISL_774933 for Chemical Measurements DNA SOLUTION LTD. Md. Imran Khan et al (DRICM) Diagnostic and Research Diagnostic and Research Center Center of Infectious EPI_ISL_1447336 of Infectious Diseases, Medical Diseases, Medical Andani Eka Putra et al Faculty, Andalas University Faculty, Andalas University 1. Tricity SARS-CoV-2 sequencing consortium: University of Gdansk, Medical University of Gdansk, Vaxican Ltd., EPI_ISL_2140367 Diagnostyka Sp. z o.o. Maciej Kosinski et al Invicta Ltd. 2. National Institute of Public Health - National Institute of Hygiene, Warsaw, Poland EPI_ISL_1145662,EPI_IS Dianovis GmbH Greiz Robert Koch Institute ? L_2115136 Fernando Hayashi Sant’Anna et EPI_ISL_1469836 Diretoria de Vigilância em Saúde Epiclin al EPI_ISL_760222,EPI_ISL _850184,EPI_ISL_850415 ,EPI_ISL_995771,EPI_IS L_1138964,EPI_ISL_1138 902,EPI_ISL_1165052,EP Division of Emerging I_ISL_1252433,EPI_ISL_ Division of Emerging Infectious Infectious Diseases, 1252434,EPI_ISL_131534 Diseases, Bureau of Infectious Bureau of Infectious 3,EPI_ISL_1315379,EPI_I Diseases Diagnosis Control, Diseases Diagnosis Ae Kyung Park et al SL_1490064,EPI_ISL_16 Korea Disease Control and Control, Korea Disease 47348,EPI_ISL_1647349, Prevention Agency Control and Prevention EPI_ISL_1647350,EPI_IS Agency L_1647351,EPI_ISL_1647 352,EPI_ISL_1675277,EP I_ISL_1934722,EPI_ISL_ 1934823,EPI_ISL_193660 4 Division of Medical Virology, Division of Medical National Health Laboratory EPI_ISL_1591413,EPI_IS Virology, Stellenbosch Service (NHLS), Tygerberg Susan Engelbrecht et al L_1608102 University and NHLS Hospital / Stellenbosch Tygerberg Hospital University Division of Viral EPI_ISL_426163,EPI_ISL Division of Viral Diseases, Diseases, Center for _425118,EPI_ISL_498044 Center for Laboratory Control of Laboratory Control of ,EPI_ISL_506992,EPI_IS Infectious Diseases, Korea Infectious Diseases, Jeong-Min Kim et al L_510599,EPI_ISL_51503 Centers for Diseases Control Korea Centers for 1,EPI_ISL_522534 and Prevention Diseases Control and Prevention New York City Public EPI_ISL_1337507 DOHMH Corona Jade Wang et al Health Laboratory Dr. Andrija Stampar Teaching EPI_ISL_1167047,EPI_IS Institute of Public Health, Istituto di Genomica L_1167061,EPI_ISL_1167 Jasmina Vranes et al Department of Clinical Applicata 054,EPI_ISL_1167082 Microbiology EPI_ISL_481746,EPI_ISL Dr. Georges-L.-Dumont National Microbiology Anna Majer et al _481751 University Hospital Centre Laboratory Bergthaler laboratory, CeMM Research Center EPI_ISL_583803,EPI_ISL Dr. Gernot Walder GmbH for Molecular Medicine of Alexandra Popa et al _583827 the Austrian Academy of Sciences Dr. Gernot Walder Sissy T. Lamprecht-Sonnleitner EPI_ISL_2106197 Dr. Gernot Walder GmbH GmbH et al EPI_ISL_1055386,EPI_IS L_1055408,EPI_ISL_1055 Dr. Leonard A. Miller Centre for National Microbiology Anna Majer et al 422,EPI_ISL_1055437,EP Health Services Laboratory (NML) I_ISL_1055447 EPI_ISL_417211,EPI_ISL Dunedin Hospital University of Otago M.E. Quiñones-Mateu et al _417212 EPI_ISL_461372,EPI_ISL _523464,EPI_ISL_131092 Dutch COVID-19 response team Erasmus Medical Center Bas Oude Munnink et al 6,EPI_ISL_1311220,EPI_I SL_2154204 EPI_ISL_523056 Dutch COVID-19 response team Erasmus Medical Center OH consortium et al Medical Microbiology, EPI_ISL_1120207 Dutch COVID-19 response team Maastricht University Jozef Dingemans* et al Medical Centre EPI_ISL_547447,EPI_ISL _547449,EPI_ISL_547451 ,EPI_ISL_547450,EPI_IS L_547452,EPI_ISL_54745 3,EPI_ISL_636513,EPI_I SL_636516,EPI_ISL_636 517,EPI_ISL_636514,EPI _ISL_636518,EPI_ISL_63 6519,EPI_ISL_636515,EP I_ISL_636520,EPI_ISL_1 014187,EPI_ISL_1014432 ,EPI_ISL_1014552,EPI_I SL_1014349,EPI_ISL_10 14557,EPI_ISL_1014562, EPI_ISL_1014565,EPI_IS L_1014566,EPI_ISL_1014 National Institute for 567,EPI_ISL_1014572,EP Dutch COVID-19 response team Public Health and the Adam Meijer et al I_ISL_1014574,EPI_ISL_ Environment (RIVM) 1014575,EPI_ISL_101457 6,EPI_ISL_1014577,EPI_I SL_1014578,EPI_ISL_10 14584,EPI_ISL_1014595, EPI_ISL_1014646,EPI_IS L_1014657,EPI_ISL_1014 671,EPI_ISL_1014661,EP I_ISL_1059911,EPI_ISL_ 1089775,EPI_ISL_108999 7,EPI_ISL_1090036,EPI_I SL_1165598,EPI_ISL_11 65516,EPI_ISL_1232313, EPI_ISL_1232268,EPI_IS L_1232248,EPI_ISL_1232 260,EPI ISL 1232328,EP Latvian Biomedical EPI_ISL_1312683,EPI_IS E. Gulbja laboratorija Research and Study Janis Pjalkovskis et al L_1613792 Centre Latvian Biomedical EPI_ISL_501829,EPI_ISL E. Gulbja Laboratorija Research and Study Ivars Silamielis et al _639690 Centre EPI_ISL_477161,EPI_ISL Egyptian National Cancer Egyptian National Zekri et al _478672 Institute (ENCI) Cancer Institute (ENCI) Santa Clara County Santa Clara County Public EPI_ISL_1483794 El Camino Hospital Public Health Laboratory Health Department et al EPI_ISL_1398364,EPI_IS Razi Vaccine and Serum Emam Ali Hospital Amir Kaffashi et al L_1398925 Research Institute Instituto Nacional de E.S.E. HOSPITAL SAN JOSE Salud- Dirección de EPI_ISL_1582978 Katherine Laiton-Donato et al DE MAICAO Investigación en Salud Pública International Centre for EPI_ISL_1899281,EPI_IS Genetic Engineering and Ethiopian Biotechnology Institute L_1899485,EPI_ISL_1897 Biotechnology (ICGEB) Molalegne Bitew et al (EBTI) 646,EPI_ISL_1898814 and ARGO Open Lab for Genome Sequencing EPI_ISL_875628,EPI_ISL Hudsonalpha Genome Eurofins Diatherix Jane Grimwood et al _979481 Sequencing Center EPI_ISL_1571307,EPI_IS L_1643945,EPI_ISL_1845 854,EPI_ISL_1846153,EP I_ISL_1846077,EPI_ISL_ 1977952,EPI_ISL_211073 Eurofins LifeCodexx GmbH Robert Koch Institute ? 7,EPI_ISL_2110489,EPI_I SL_2110488,EPI_ISL_21 10499,EPI_ISL_2110532, EPI_ISL_2110453 EPI_ISL_848582,EPI_ISL Evandro Chagas Evandro Chagas Institute Santos et al _848606 Institute Andersen lab at Scripps EPI_ISL_1815257 EXCITE Lab Nicole L Washington et al Research EPI_ISL_548971 Expo2020 Emergency Center Agiomix Walaa Allam et al Faculty of Medicine, Al-Quds Faculty of Medicine, Al- EPI_ISL_1273102 Ereqat et al University Quds University EPI_ISL_640050 False Bay Hospital wc FBH NHLS/UCT Arash Iranzadeh et al Group of Genomics and Federal Budget Health Care Postgenomic EPI_ISL_2038893 Institution "Center of Hygiene Technologies of Central Samoilov AE et al and Epidemiology in Tver region" Research Institute of Epidemiology EPI_ISL_2153095,EPI_IS Fimlab Laboratories Fimlab Laboratories Minna Paloniemi et al L_2153110 Pathogen Discovery, Respiratory Viruses FL Bureau of Public Health Branch, Division of Viral EPI_ISL_419560 Anna Uehara et al Laboratories-Tampa Diseases, Centers for Disease Control and Prevention EPI_ISL_489721,EPI_ISL Florida Bureau of Public Health Florida Bureau of Public Sarah Schmedes et al _526569,EPI_ISL_653321 Laboratories Health Laboratories The Public Health EPI_ISL_476139 Folkhalsomyndigheten Oskar Karlsson Lindsjo et al Agency of Sweden NGS Competence Center Tübingen, Institut EPI_ISL_581487,EPI_ISL für Medizinische Fondation Congolaise pour la _581491,EPI_ISL_581492 Mikrobiologie und Angel Angelov et al recherche medicale (FCRM) ,EPI_ISL_581493 Hygiene, Universitätsklinikum Tübingen EPI_ISL_1671923,EPI_IS Fondation Congolaise pour la Institute of Tropical Prof. Dr. Thirumalaisamy P. L_1671925,EPI_ISL_1671 recherche medicale (FCRM), Medicine Velavan et al 926 Francine Ntoumi EPI_ISL_1654214,EPI_IS Fondation Congolaise pour la L_1854763,EPI_ISL_1854 Institute of Tropical recherche medicale (FCRM), Prof. Francine Ntoumi et al 768,EPI_ISL_1857284,EP Medicine Francine Ntoumi I_ISL_1857282 NGS Competence Center Tuebingen, EPI_ISL_912353,EPI_ISL Fondation Congolaise pour la Institut für Medizinische _912358,EPI_ISL_912363 recherche medicale (FCRM), Mikrobiologie und Angel Angelov et al ,EPI_ISL_912364 Francine Ntoumi Hygiene, Universitaetsklinikum Tübingen Fraunhofer-Institut fur EPI_ISL_2125018 Zelltherapie und Immunologie IZI Robert Koch Institute ? AG Next-Generation Diagnostics Fujian Center for Fujian Center for Disease EPI_ISL_431780 Disease Control and Lin Qi et al Control and Prevention Prevention Centers for Disease EPI_ISL_1613245,EPI_IS Control and Prevention L_1667321,EPI_ISL_1667 Fulgent Genetics Division of Viral Dakota Howard et al 332,EPI_ISL_1992696,EP Diseases, Pathogen I_ISL_2134065 Discovery Coordenação Geral de Laboratórios de Saúde EPI_ISL_1182549,EPI_IS Fundação Ezequiel Dias Pública Vagner Fonseca et al L_1182611 (FUNED) (CGLAB/DAEVS/SVS/M S) Norwegian Institute of EPI_ISL_493370,EPI_ISL Furst Medical Laboratory Public Health, Kathrine Stene-Johansen et al _493372 Department of Virology GA Department of Public EPI_ISL_1225321 GA Department of Public Health Stacy Reeves et al Health EPI_ISL_730569,EPI_ISL Gazi University Faculty of Gazi University Faculty _730572,EPI_ISL_730574 Medicine, Medical Virology of Medicine, Medical Erdem ahin et al ,EPI_ISL_984742 Laboratory Virology Laboratory Gencore - Universidad de los Gencore - Universidad EPI_ISL_2157199 Marcela Guevara et al Andes de los Andes EPI_ISL_1185245,EPI_IS Genelabs Medical (Pvt) Chandanamali Punchihewa et Genelabs Medical (Pvt) Ltd L_1184582 Ltd al General Hospital "Abdulah EPI_ISL_2029122 Alea Genetic Centre Rijad Konjhodzic et al Nakas" BGI & Institute of Microbiology, Chinese Academy of Sciences & Shandong First Medical General Hospital of Central University & Shandong EPI_ISL_406798 Theater Command of People's Academy of Medical Weijun Chen et al Liberation Army of China Sciences & General Hospital of Central Theater Command of People's Liberation Army of China Research Center for Genetic Engineering and Biotechnology "Georgi D. EPI_ISL_1142575 General Hospital - Ohrid Aleksandar J. Dimovski et al Efremov” , Macedonian Academy of Sciences and Arts Research Center for Genetic Engineering and EPI_ISL_677726,EPI_ISL Biotechnology "Georgi D. General Hospital - Ohrid RCGEB - MASA et al _677722 Efremov” , Macedonian Academy of Sciences and Arts Research Center for Genetic Engineering and Biotechnology "Georgi D. EPI_ISL_677674 General Hospital - Prilep RCGEB - MASA et al Efremov” , Macedonian Academy of Sciences and Arts Research Center for Genetic Engineering and Biotechnology "Georgi D. EPI_ISL_2001028 General Hospital - Tetovo Aleksandar J. Dimovski et al Efremov” , Macedonian Academy of Sciences and Arts EPI_ISL_746483,EPI_ISL _746489,EPI_ISL_746491 ,EPI_ISL_746511,EPI_IS L_746528,EPI_ISL_74658 6,EPI_ISL_746603,EPI_I SL_746616,EPI_ISL_746 632,EPI_ISL_746691,EPI _ISL_746695,EPI_ISL_74 6708,EPI_ISL_746714,EP I_ISL_746763,EPI_ISL_7 46795,EPI_ISL_1167669, EPI_ISL_1167674,EPI_IS L_1167710,EPI_ISL_1167 723,EPI_ISL_1167773,EP I_ISL_1167796,EPI_ISL_ 1167821,EPI_ISL_116782 Genetica Molecular and Instituto de Salud 3,EPI_ISL_1167847,EPI_I Subdepartamento de Virologia Javier Tognarelli et al Publica de Chile SL_1167861,EPI_ISL_11 ISP Chile 67902,EPI_ISL_1167907, EPI_ISL_1167740,EPI_IS L_1167924,EPI_ISL_1300 492,EPI_ISL_1300502,EP I_ISL_1321466,EPI_ISL_ 1321494,EPI_ISL_132151 1,EPI_ISL_1321533,EPI_I SL_1321538,EPI_ISL_13 21555,EPI_ISL_1470484, EPI_ISL_1470456,EPI_IS L_1470529,EPI_ISL_1633 408,EPI_ISL_1633498,EP I_ISL_1633477,EPI_ISL_ 2009228,EPI_ISL_200963 0 EPI_ISL_936385,EPI_ISL Genetica y Virologia, Facultad de Genetica y Virologia, _936386,EPI_ISL_936383 Panzera et al Ciencias Facultad de Ciencias ,EPI_ISL_936384 GENETICS GENETICS DEPARTMENT, DEPARTMENT, ZHEEN EPI_ISL_2153105 ZHEEN INTERNATIONAL Khailany et al INTERNATIONAL HOSPITAL HOSPITAL Genome Analysis Genome Analysis Center, EPI_ISL_2080269 Center, Kamma Hanako Yazawa et al Kamma Memorial Hospital Memorial Hospital EPI_ISL_2036272 Genome Centre Genome Centre Shovon Lal Sarkar et al SEARCH Alliance San Diego Genomica Lab Molecular, Andersen lab at Scripps EPI_ISL_730221 with Jonathan Gonzalez Garcia M©xico Research et al Genomic Laboratory (GLAB) Genomic Laboratory (Conjoint lab of Health EPI_ISL_735350 (GLAB), Istanbul Ilker Karacan et al Directorate of Istanbul and Technical University Istanbul Technical University) Genomic Sciences, Genomic Sciences, Rehman EPI_ISL_632908 Rehman Medical Ali et al Medical Institute Institute EPI_ISL_812847,EPI_ISL Genomics Program, Children Genomics Program, Hatem et al _812852,EPI_ISL_812790 Cancer Hospital Children Cancer Hospital genXone SA, Research genXone SA, Molecular EPI_ISL_1008758 & Development Maciej Sykulski et al Diagnostics Laboratory / NZOZ Laboratory Ginkgo Bioworks Clinical Utah Public Health EPI_ISL_745492 Erin L. Young et al Laboratory Laboratory GMERS Medical Collage, Gujarat Biotechnology EPI_ISL_1677798 GMERS Medical College,Civil Nitin Savaliya et al Research Centre Hospital, Sola, Ahmedabad Gonoshasthya-RNA EPI_ISL_775217,EPI_ISL Gonoshasthya-RNA Molecular Molecular Research Nihad Adnan et al _775019 Research Center Center Gorgas memorial Gorgas memorial Institute For EPI_ISL_1001457 Institute For Health Díaz Y et al Health Studies Studies Gorgas Memorial EPI_ISL_496609,EPI_ISL Gorgas Memorial Laboratory of Laboratory of Health Danilo Franco et al _496719,EPI_ISL_496843 Health Studies Studies EPI_ISL_1502844,EPI_IS Gorgas Memorial L_1502957,EPI_ISL_1502 Gorgas Memorial Laboratory of Laboratory of Health Gonzalez Claudia et al 995,EPI_ISL_1503069,EP Health Studies Studies I_ISL_1503137 EPI_ISL_1225330,EPI_IS L_1225342,EPI_ISL_1225 429,EPI_ISL_1225449,EP I_ISL_1225452,EPI_ISL_ 1225468,EPI_ISL_122548 Gorgas Memorial Gorgas Memorial Laboratory of 1,EPI_ISL_1225489,EPI_I Laboratory of Health Yamilka Diaz et al Health Studies SL_1225501,EPI_ISL_12 Studies 25506,EPI_ISL_1225513, EPI_ISL_1225529,EPI_IS L_1225539,EPI_ISL_1225 542 National Institute of EPI_ISL_508250 Government Medical College Arindam Maitra et al Biomedical Genomics Government Medical College, Gujarat Biotechnology EPI_ISL_455021 Ankit Hinsu et al Vadodara Research Centre EPI_ISL_2105484,EPI_IS Governor Celestino Gallares Philippine Genome Francis A. 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Richmond et al _547657 Diagnostics Laboratory Research Institute Hadassah Hebrew University Viral EPI_ISL_2096775,EPI_IS Hadassah Medical Center Sequencing Group, L_2096776,EPI_ISL_2096 Clinical Virology Laboratory, Hadar Golan Berman et al Hadassah Hebrew 891 Hadassah Ein Kerem University Medical Center Hannover Medical Hannover Medical School, EPI_ISL_1268834 School, Institute of Lars Steinbrück et al Institute of Virology Virology Norwegian Institute of EPI_ISL_668392,EPI_ISL Haukeland University Hospital, Public Health, Kathrine Stene-Johansen et al _1058051 Dept. of Microbiology Department of Virology Hebei Provincial Center Hebei Provincial Center for for Disease Control and Disease Control and Prevention, Prevention, Shijiazhuang, Hebei Province; EPI_ISL_796014 Shijiazhuang, Hebei Shunxiang Qi et al National Institute for Viral Province; National Disease Control and Prevention, Institute for Viral Disease China CDC Control and Prevention, EPI_ISL_1500961,EPI_IS HEGP - Laboratoire de HEGP - Laboratoire de Virologie David Veyer et al L_2029113 Virologie EPI_ISL_1512225,EPI_IS L_1581188,EPI_ISL_1592 Centers for Disease 421,EPI_ISL_1679967,EP Control and Prevention I_ISL_1796460,EPI_ISL_ Helix/Illumina Division of Viral Dakota Howard et al 1804291,EPI_ISL_190723 Diseases, Pathogen 7,EPI_ISL_2010581,EPI_I Discovery SL_2144594 Centers for Disease Control and Prevention EPI_ISL_1340428 Helix/Illumina Division of Viral Peter W. 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FERNANDO EPI_ISL_1201438 Investigación y Francisco Duarte et al ESCALANTE PRADILLA Enseñanza en Nutrición y Salud Inciensa, Instituto Costarricense de Hospital Dr. Raul Blanco EPI_ISL_770028 Investigación y Francisco Duarte et al Cervantes Enseñanza en Nutrición y Salud Instituto Adolfo Lutz, Hospital e Maternidade Sino Interdiciplinary EPI_ISL_861657 Claudio Tavares Sacchi et al Brasileiro Procedures Center, Strategic Laboratory 28. Laboratory of Recombinant Vaccines, Intercollegiate Faculty of Biotechnology University Hospital for Infectious Diseases, of Gdansk and Medical EPI_ISL_1084623 Molecular Diagnostics University of Gdansk, 2. Lukasz Rabalski et al Laboratory, Warsaw, Poland ViroGenetics - BSL3 Laboratory of Virology, Maopolska Centre of Biotechnology, Jagiellonian University 31. 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L_2109472 Diagnostik Berlin-Potsdam EPI_ISL_1722241 IMD - MVZ Labor Martinsried Robert Koch Institute ? EPI_ISL_1372093,EPI_IS Immunogenomics lab, Institute of Institute of Life Sciences - L_1662451,EPI_ISL_1663 Sunil K. Raghav et al Life Sciences, Bhubaneswar INSACOG 562 EPI_ISL_1018099,EPI_IS L_1018094,EPI_ISL_1018 Immunology, Noguchi Immunology, Noguchi Memorial 079,EPI_ISL_1018086,EP Memorial Institute for Adu et al Institute for Medical Research I_ISL_2001092,EPI_ISL_ Medical Research 2001075 Immunology, Noguchi EPI_ISL_2001066,EPI_IS Immunology, Noguchi Memorial Memorial Institute for Campbell et al L_2001065 Institute for Medical Research Medical Research Bioinformatics EPI_ISL_1213358 IMT-UFRN/RN Alessandra P Lamarca et al Laboratory / LNCC Laboratorio Mixto de EPI_ISL_648218 INBIRS-UBA Biotecnología Acuática Joaquín Ezpeleta et al (LMBA) EPI_ISL_1517393,EPI_IS Inciensa, Instituto L_1517399,EPI_ISL_1517 Inciensa, Instituto Costarricense Costarricense de 401,EPI_ISL_1517402,EP de Investigación y Enseñanza en Investigación y Cristian Peréz-Corrales et al I_ISL_1517403,EPI_ISL_ Nutrición y Salud Enseñanza en Nutrición 1517405,EPI_ISL_151742 y Salud 1,EPI_ISL_1517433 Incubadora Venezolana de Ciencia, Venezuela / Instituto Nacional de Salud, Bogotá, Colombia / Grupo de Investigaciones Microbiológicas-UR EPI_ISL_476704,EPI_ISL Incubadora Venezolana de (GIMUR), Departamento Alberto Paniz-Mondolfi et al _476702 Ciencia, Venezuela de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia / Icahn School of Medicine at Mount Sinai, New York, USA National Influenza Indian Council of Medical Center, Indian Council of EPI_ISL_413523 Research-National Institute of Medical Research- Potdar V et al Virology National Institute of Virology Group of Genomics and Postgenomic Infectious Diseases Hospital EPI_ISL_2032642 Technologies of Central Samoilov AE et al 2 Research Institute of Epidemiology Infectious Diseases, Infectious Diseases, King Faisal EPI_ISL_2151337 King Faisal Hospital Alhamlan F et al Hospital Research Center Research Center EPI_ISL_884386,EPI_ISL Infectious Diseases, Quest Infectious Diseases, Rosenthal et al _884409,EPI_ISL_884411 Diagnostics Quest Diagnostics SEARCH Alliance San Diego Andersen lab at Scripps EPI_ISL_496372 Infectolab with Samuel Navarro Alvarez et Research al Centers for Disease Control and Prevention EPI_ISL_1692611 Infinity Biologix Division of Viral Dakota Howard et al Diseases, Pathogen Discovery EPI_ISL_1576833,EPI_IS L_1576834,EPI_ISL_1577 Laboratorio de Virología 798,EPI_ISL_1577817,EP INHRR Loureiro CL et al Molecular I_ISL_1577815,EPI_ISL_ 1577816 INMI Lazzaro Spallanzani INMI Lazzaro EPI_ISL_2000618 M Rueca et al IRCCS Spallanzani IRCCS Laboratory of Virology, INMI Lazzaro Spallanzani EPI_ISL_410546 INMI Lazzaro Maria R. Capobianchi et al IRCCS Spallanzani IRCCS National Institute of EPI_ISL_2151101 INSACOG-Sikkim Biomedical Genomics – Arindam Maitra et al INSACOG National Institute of EPI_ISL_1357700 INSACOG-WB Arindam Maitra et al Biomedical Genomics National Institute of EPI_ISL_1589885,EPI_IS INSACOG-WB Biomedical Genomics – Arindam Maitra et al L_1589927 INSACOG INSPI-Centro de INSPI-CRN de Influenza y otros Investigación EPI_ISL_940781 Leandro Patiño et al virus respiratorios Multidisciplinaria de la DTIDI EPI_ISL_826811,EPI_ISL _826814,EPI_ISL_826820 INSPI-CRN DE INFLUENZA Y Instituto de Salud ,EPI_ISL_826827,EPI_IS OTROS VIRUS Javier Tognarelli et al Publica de Chile L_826832,EPI_ISL_82683 RESPIRATORIOS 6 Institute of microbiology EPI_ISL_955159,EPI_ISL Institute for Biocides and Medical and Immunology, Faculty Knezevic et al _955165 Ecology of Medicine, University of Belgrade Institute for Health Research, EPI_ISL_1633467,EPI_IS Epidemiological Surveillance and Abbott Souleymane Mboup et al L_1827950 Training (IRESSEF) EPI_ISL_459956,EPI_ISL _718277,EPI_ISL_718290 ,EPI_ISL_718282,EPI_IS Institute for Medical L_728157,EPI_ISL_94409 Institute for Medical Research, Research, Infectious 9,EPI_ISL_962526,EPI_I Infectious Disease Research Disease Research SL_1055264,EPI_ISL_14 Centre, National Institutes of Centre, National Suppiah J et al 06185,EPI_ISL_1406194, Health, Ministry of Health Institutes of Health, EPI_ISL_1406250,EPI_IS Malaysia Ministry of Health L_1673683,EPI_ISL_1787 Malaysia 254,EPI_ISL_2090886,EP I_ISL_2090887 Institute for Medical Institute for Medical Research, Research, Infectious Infectious Disease Research Disease Research EPI_ISL_430441 Centre, National Institutes of Centre, National Suppiah.J et al Health, Ministry of Health Institutes of Health, Malaysia Ministry of Health Malaysia Institute for Medical Research, Infectious Disease Research Malaysia Genome EPI_ISL_455791 Centre, National Institutes of Mohd Noor Mat Isa et al Institute Health, Ministry of Health Malaysia COVID-19 Network EPI_ISL_1491570,EPI_IS Institute for Urban Disease Investigations (CONI) Elizabeth Batty et al L_1511133 Control and Prevention Alliance EPI_ISL_707707,EPI_ISL COVID-19 Network Institute for Urban Disease _733546,EPI_ISL_733564 Investigations (CONI) Kamolthip Atsawawaranunt et al Control and Prevention ,EPI_ISL_812932 Alliance Virology Department Institute of Microbiology EPI_ISL_1061425,EPI_IS Institute of Biocides and Medical and Immunology Faculty Banko Ana et al L_1061431 Ecology, Belgarde, Serbia of Medicine University of Belgrade Virology Department, Institute of microbiology Institute of Biocides and Medical EPI_ISL_909737 and immunology, Faculty Banko Ana et al Ecology, Belgrade, Serbia of Medicine University of Blegrade Institute of Epidemiology, Institute for Developing EPI_ISL_1938477 Disease Control and Research Science and Health Hassan Afrad et al (IEDCR) Initiatives (ideSHi) EPI_ISL_1181824,EPI_IS Institute of Microbiology L_1181826,EPI_ISL_1510 Institute of Microbiology and and Immunology, Faculty 968,EPI_ISL_1511055,EP Immunology, Faculty of Alen Sulji et al of Medicine, University of I_ISL_1914765,EPI_ISL_ Medicine, University of Ljubljana Ljubljana 1964394 Institute of Microbiology Institute of Microbiology and and Immunology, Faculty EPI_ISL_1098758 Immunology, Faculty of Samo Zakotnik et al of Medicine, University of Medicine, University of Ljubljana Ljubljana Institute of Microbiology Institute of Microbiology and EPI_ISL_635272,EPI_ISL and Immunology, Faculty Immunology, Faculty of Tomaž Mark Zorec et al _635263 of Medicine, University of Medicine, University of Ljubljana Ljubljana Institute of Microbiology, Institute of Microbiology, EPI_ISL_539788 Universidad San Francisco de Universidad San Andrea Macias et al Quito Francisco de Quito EPI_ISL_486842,EPI_ISL _486843,EPI_ISL_486844 Institute of Microbiology, Institute of Microbiology, ,EPI_ISL_491940,EPI_IS Universidad San Francisco de Universidad San Belén Prado-Vivar et al L_527810,EPI_ISL_82429 Quito Francisco de Quito 2 Institute of Microbiology, Institute of Microbiology, EPI_ISL_516648 Universidad San Francisco de Universidad San Juan José Guadalupe et al Quito Francisco de Quito Institute of Microbiology, Institute of Microbiology, EPI_ISL_516650,EPI_ISL Universidad San Francisco de Universidad San Prado-Vivar et al _516652 Quito Francisco de Quito EPI_ISL_417482,EPI_ISL _660530,EPI_ISL_660532 Institute of Microbiology, Institute of Microbiology, ,EPI_ISL_660534,EPI_IS Universidad San Francisco de Universidad San Sully Márquez et al L_728202,EPI_ISL_18966 Quito Francisco de Quito 86,EPI_ISL_2086703,EPI _ISL_2100441 EPI_ISL_1443648,EPI_IS Institute of Microbiology, Omics Sciences L_1443652,EPI_ISL_1443 Universidad San Francisco de Derly Andrade Molina et al Laboratory 657,EPI_ISL_1443662 Quito Institute of Virology, Biomedical Faculty of Natural EPI_ISL_577740 Research Center of the Slovak Sciences, Comenius Broa Brejová et al Academy of Sciences, Bratislava University, Bratislava Institute of Virology, Institute of Virology, Medical Clinial Virus Genomics, EPI_ISL_1805024 Center, University of Freiburg, Medical Center, Jonas Fuchs et al Freiburg, Germany University of Freiburg, Freiburg, Germany Institute of microbiology Institute of Virology, Vaccines and Immunology, Faculty EPI_ISL_1654812 Knezevic et al and Sera "Torlak" of Medicine, University of Belgrade Institut für Medizinische Institut für Medizinische Virologie, EPI_ISL_1138693 Virologie, Universitätsklinikum Barbara Muehlemann et al Universitätsklinikum Frankfurt Frankfurt Bergthaler laboratory, Institut für Virologie am CeMM Research Center EPI_ISL_475922 Department für Hygiene, for Molecular Medicine of Alexandra Popa et al Mikrobiologie und Public Health the Austrian Academy of Sciences NGS Competence Center Tübingen, Institut Institut für Virologie und für Medizinische EPI_ISL_508688,EPI_ISL Epidemiologie der Mikrobiologie und Angel Angelov et al _508696 Viruskrankheiten, Hygiene, Universitätsklinikum Tübingen Universitätsklinikum Tübingen Unité Mixte Internationale TransVIHMI (UMI 233 EPI_ISL_1416192,EPI_IS IRD – U1175 INSERM - L_1415425,EPI_ISL_1443 Institut National d'hygiène Mounerou SALOU et al Université de 001 Montpellier) IRD (Institut de recherche pour le développement) Unité Mixte Internationale TransVIHMI (UMI 233 IRD – U1175 INSERM - EPI_ISL_1508958 Institut National d'hygiène Mounerou SALOU et al Université de Montpellier) IRD (Institut de recherche pour le développement) Laboratoire de EPI_ISL_1913082 Institut National d'Hygiène Mouna Ouadghiri et al Biotechnologie Unité Mixte Internationale EPI_ISL_1404615,EPI_IS TransVIHMI (UMI 233 L_1436817,EPI_ISL_1434 IRD – U1175 INSERM - Institut National d'Hygiène Mounerou SALOU et al 443,EPI_ISL_1435763,EP Université de I_ISL_1437749 Montpellier) IRD (Institut de recherche pour le développement) Unité Mixte Internationale TransVIHMI (UMI 233 IRD – U1175 INSERM - EPI_ISL_1406177 Institut National d’Hygiène (INH) Mounerou SALOU et al Université de Montpellier)IRD (Institut de recherche pour le développement) Instituto de Biotecnologia - Instituto de Biotecnologia EPI_ISL_875544 Leila Sabrina Ullmann et al UNESP-Botucatu-SP - UNESP-Botucatu-SP Instituto de Diagnostico y Instituto de Diagnostico y Referencia EPI_ISL_872097 Referencia Epidemiologicos Abril Rodriguez-Maldonado et al Epidemiologicos (INDRE) (INDRE) Instituto de Diagnostico y Instituto de Diagnostico y EPI_ISL_576273,EPI_ISL Referencia Referencia Epidemiologicos Ernesto Ramirez-Gonzalez et al _576277,EPI_ISL_658901 Epidemiologicos (INDRE) (INDRE) Instituto de Diagnostico y Instituto de Diagnostico y EPI_ISL_516620,EPI_ISL Referencia Referencia Epidemiologicos Gisela Barrera-Badillo et al _576275 Epidemiologicos (INDRE) (INDRE) Instituto de Diagnostico y Instituto de Diagnostico y Referencia Taboada Ramírez Blanca. EPI_ISL_455434 Referencia Epidemiologicos Epidemiologicos Ramirez-Gonzalez Ernesto et al (INDRE) (INDRE) EPI_ISL_1301458,EPI_IS L_1301512,EPI_ISL_1301 514,EPI_ISL_1301519,EP Instituto de Diagnostico y Instituto de I_ISL_1301685,EPI_ISL_ Referencia Epidemiologicos Biotecnología de la Authors from IBT et al 1301691,EPI_ISL_130169 InDRE_RNLSP UNAM 6,EPI_ISL_1301703,EPI_I SL_1301709 EPI_ISL_1060683,EPI_IS Instituto de Diagnostico y Instituto de Diagnostico y L_1060708,EPI_ISL_1060 Referencia Referencia Epidemiologicos Claudia Wong-Arambula et al 704,EPI_ISL_1060720,EP Epidemiologicos (INDRE)_RNLSP I_ISL_1060733 (INDRE) EPI_ISL_913914,EPI_ISL _913924,EPI_ISL_913927 ,EPI_ISL_913934,EPI_IS L_913938,EPI_ISL_91394 8,EPI_ISL_913959,EPI_I SL_933669,EPI_ISL_105 4948,EPI_ISL_1054962,E PI_ISL_1054970,EPI_ISL Instituto de Diagnostico y Instituto de Diagnostico y _1054978,EPI_ISL_10549 Referencia Referencia Epidemiologicos Claudia Wong-Arambula et al 86,EPI_ISL_1168464,EPI Epidemiologicos INDRE_RNLSP _ISL_1168489,EPI_ISL_1 (INDRE) 168521,EPI_ISL_1168540 ,EPI_ISL_1168542,EPI_I SL_1168598,EPI_ISL_11 68607,EPI_ISL_1168613, EPI_ISL_1168615,EPI_IS L_1168621,EPI_ISL_1168 624 EPI_ISL_748139,EPI_ISL Instituto de Investigaciones Institut Pasteur de Daiana Mir et al _748138 Biológicas Clemente Estable Montevideo Área de Secuenciación del Laboratorio de Virología del Hospital de Instituto de Investigaciones Niños Dr. Ricardo EPI_ISL_1395785 Biomédicas en Retrovirus y Gutierrez on behalf of Vanesa Seery et al SIDA (INBIRS) 'Proyecto Argentino Interinstitucional de genomica de SARS-CoV- 2' (PAIS Consortium) Instituto de Medicina Tropical Laboratorio de EPI_ISL_1629797,EPI_IS Alexander Von Humboldt, Genómica Microbiana, Lenin Maturrano et al L_1629795 Universidad Peruana Cayetano Universidad Peruana Heredia Cayetano Heredia Instituto de Medicina Tropical & Grubaugh Lab - Yale EPI_ISL_1378844 Salud Global Universidad Joseph Fauver et al School of Public Health Iberoamericana EPI_ISL_491188,EPI_ISL Instituto Gulbenkian de Instituto Gulbenkian de Ciência João Costa et al _491191 Ciência EPI_ISL_491270,EPI_ISL Instituto Gulbenkian de Instituto Gulbenkian de Ciência Susana Ladeiro et al _491297,EPI_ISL_491288 Ciência Instituto de Diagnostico y Instituto Nacional de Referencia EPI_ISL_412972 Ramirez-Gonzalez Ernesto et al Enfermedades Respiratorias Epidemiologicos (INDRE) Instituto Nacional de Instituto Nacional de EPI_ISL_837781,EPI_ISL Enfermedades Respiratorias Enfermedades Celia Boukadida et al _837811 (INER) Respiratorias (INER) EPI_ISL_1347897,EPI_IS L_1347920,EPI_ISL_1347 KRISP, KZN Research 933,EPI_ISL_1347934,EP Instituto Nacional de Innovation and Morais J et al I_ISL_1347935,EPI_ISL_ Investigação em Saúde Sequencing Platform 1545346,EPI_ISL_154535 8 EPI_ISL_491945,EPI_ISL Instituto Nacional de _491946,EPI_ISL_491951 Investigación en Salud Pública - INSPI - Charité Alfredo Bruno Caicedo et al ,EPI_ISL_491953,EPI_IS INSPI L_491954 Instituto Nacional de Medicina Instituto Nacional de EPI_ISL_2080661 Hidalgo-Miranda A et al Genomica Medicina Genomica Instituto Nacional de Medicina Instituto Nacional de EPI_ISL_522986 Hidalgo-Miranda A et al Genómica Medicina Genómica EPI_ISL_536486,EPI_ISL Laboratorio de Eduardo Juscamayta Lopez et _536497,EPI_ISL_536518 Instituto Nacional de Salud Infecciones al ,EPI_ISL_536525 Respiratorias Agudas Centro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, EPI_ISL_941943,EPI_ISL Instituto Nacional de Salud, Universidad del Rosario, Luz Helena Patiño et al _941955 Bogotá, Colombia Bogotá, Colombia Instituto Nacional de Salud, Bogotá, Colombia Icahn School of Medicine at Mount Sinai, New York, USA Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, EPI_ISL_447756,EPI_ISL Instituto Nacional de Salud, Universidad del Rosario, Juan David Ramírez et al _447794,EPI_ISL_447805 Bogotá, Colombia Bogotá, Colombia Instituto Nacional de Salud, Bogotá, Colombia Icahn School of Medicine at Mount Sinai, New York, USA EPI_ISL_498160,EPI_ISL _498167,EPI_ISL_526969 ,EPI_ISL_526967,EPI_IS L_526949,EPI_ISL_65374 5,EPI_ISL_653747,EPI_I Instituto Nacional de Salud, Instituto Nacional de SL_653754,EPI_ISL_653 Katherine Laiton-Donato et al Bogotá, Colombia Salud, Bogotá, Colombia 762,EPI_ISL_739663,EPI _ISL_739672,EPI_ISL_73 9673,EPI_ISL_739676,EP I_ISL_739677,EPI_ISL_7 39680 Instituto Nacional de Instituto Nacional de Salud- Salud- Dirección de EPI_ISL_1424059 Dirección de Investigación en Katherine Laiton-Donato et al Investigación en Salud Salud Pública Pública Instituto Nacional de Instituto Nacional de Salud- EPI_ISL_956289,EPI_ISL Salud- Dirección de Dirección de Redes de Katherine Laiton-Donato et al _956291,EPI_ISL_956294 Investigación en Salud Laboratorios de Salud Pública Pública Instituto Nacional de Salud, Universidad Cooperativa de Instituto Nacional de Salud - Colombia, Instituto EPI_ISL_456122,EPI_ISL Unidad de Secuenciación y Alexander von Katherine Laiton-Donato et al _456140 Análisis Genómico Humboldt, Imperial College-London, London School of Hygiene & Tropical Medicine EPI_ISL_510889,EPI_ISL _511532,EPI_ISL_511691 Instituto Nacional de Saude Instituto Nacional de Borges et al ,EPI_ISL_693553,EPI_IS (INSA) Saude (INSA) L_1023463 Instituto Nacional de Instituto Nacional de Saude Saude (INSA) and (INSA) and BioSystems & BioSystems & Integrative EPI_ISL_1854273 Borges et al Integrative Sciences Institute Sciences Institute (BioISI) Genomics Unit, FCUL (BioISI) Genomics Unit, FCUL Instituto Nacional de Saude (INSA) and i3S - Instituto de Instituto Nacional de EPI_ISL_2004296 Borges et al Investigação e Inovação em Saude (INSA) Saúde Instituto Nacional de EPI_ISL_732227,EPI_ISL Instituto Nacional de Saude Saude (INSA) and _732255,EPI_ISL_185427 (INSA) and Instituto Gulbenkian Borges et al Instituto Gulbenkian de 0 de Ciencia (IGC) Ciencia (IGC) EPI_ISL_887420,EPI_ISL _887421,EPI_ISL_887458 KRISP, KZN Research Instituto Nacional de Saude ,EPI_ISL_887464,EPI_IS Innovation and Nalia Ismael et al (INS), Mozambique L_887500,EPI_ISL_88750 Sequencing Platform 2,EPI_ISL_964947 EPI_ISL_418206,EPI_ISL Institut Pasteur Dakar Institut Pasteur de Dakar Ndongo Dia et al _481243 EPI_ISL_498238,EPI_ISL Institut Pasteur de Dakar Institut Pasteur de Dakar Ndongo Dia et al _498239 EPI_ISL_999032 Institut Pasteur de Guinée Institut Pasteur de Dakar Grayo Solene et al EPI_ISL_613433,EPI_ISL _613430,EPI_ISL_613420 Institut Pasteur de la Institut Pasteur de la ,EPI_ISL_613443,EPI_IS Marion Barbet et al Guadeloupe Guadeloupe L_613446,EPI_ISL_61342 5 Institut Pasteur de EPI_ISL_1992100 Institut Pasteur de Montevideo Daiana Mir et al Montevideo Functional Genomics EPI_ISL_2110643 Institut Pasteur du Maroc Melloul Marouane et al platform/CNRST EPI_ISL_459969,EPI_ISL _459974,EPI_ISL_459978 Institut Pasteur du Maroc Institut Pasteur du Maroc Marion Barbet et al ,EPI_ISL_459983,EPI_IS L_459984 EPI_ISL_1652055,EPI_IS Integrated Biorepository of Molecular Biology L_1652057,EPI_ISL_1652 Savannah Mwesigwa et al H3Africa Uganda – IBRH3AU Laboratory 056 Omics Sciences EPI_ISL_1968643 INTERLAB Derly Andrade Molina et al Laboratory Institute for Medical Research, Infectious Ipoh Public Health Laboratory Disease Research EPI_ISL_1919648 (MKAI), Ministry of Health Centre, National Suppiah J et al Malaysia Institutes of Health, Ministry of Health Malaysia IRCCS Sacro Cuore Don University of Verona, Calabria Hospital, Department of EPI_ISL_751447 Department of Antonio Mori et al Infectious, Tropical Diseases & Biotechnology Microbiology EPI_ISL_1630270 IRESSEF Abbott Souleymane Mboup et al EPI_ISL_1910386,EPI_IS L_1910388,EPI_ISL_1910 Iressef Genomics lab IRESSEF Souleymane MBOUP et al 391,EPI_ISL_1910390 L'institut de Recherche EPI_ISL_1167135,EPI_IS en Santé, de L_1167139,EPI_ISL_1167 Iressef Genomics lab Surveillance Souleymane MBOUP et al 164,EPI_ISL_1167126 Épidémiologique et de Formation (IRESSEF) EPI_ISL_516907,EPI_ISL Israel Central Virology _516913,EPI_ISL_575334 Israel Central Virology laboratory Neta Zuckerman et al laboratory ,EPI_ISL_649062 EPI_ISL_1073586,EPI_IS L_1209905,EPI_ISL_1240 Israel National 651,EPI_ISL_1763181,EP Israel Central Virology laboratory Consortium for SARS- Neta Zuckerman et al I_ISL_2084096,EPI_ISL_ CoV-2 sequencing 2084952,EPI_ISL_208586 9,EPI_ISL_2083957 Israel National EPI_ISL_1240647,EPI_IS Israel Central Virology Consortium for SARS- Neta Zuckerman et al L_1240649 Laboratory CoV-2 sequencing Antonio Grimaldi Patrizia Annunziata Francesco Panariello Biancamaria Pierri Claudia Tiberio Valentina Bouche Chiara Colantuono Telethon Institute of Istituto Zooprofilattico Maria Concetta Cuomo Denise EPI_ISL_1254965 Genetics and Medicine Sperimentale del Mezzogiorno Di Concilio Lucio Di Filippo (TIGEM) Anna Manfredi Marcello Salvi Antonio Limone Luigi Atripaldi Pellegrino Cerino Andrea Ballabio Davide Cacchiarelli et al EPI_ISL_736840,EPI_ISL Istituto Zooprofilattico _837310,EPI_ISL_142416 TIGEM Antonio Grimaldi et al Sperimentale del Mezzogiorno 8 EPI_ISL_2004073,EPI_IS IU-Cerrahpasa, Cerrahpasa IU-Cerrahpasa, L_2004075,EPI_ISL_2004 School of Medicine, COVID-19 Cerrahpasa School of Mert Kuskucu et al 069 Lab Medicine, COVID-19 Lab Jaber Al Ahmad Al Sabah Dasman diabetes EPI_ISL_422424 Fahd Al-Mulla et al Hospital Institute Jamil-ur-Rahman Center Jamil-ur-Rahman Center for for Genome Research, EPI_ISL_2151355,EPI_IS Genome Research, Dr. Panjwani Dr. Panjwani Center for Irfan et al L_2151365 Center for Molecular Medicine Molecular Medicine and and Drug Research Drug Research Jamil-ur-Rahman Center Jamil-ur-Rahman Center for for Genome Research, EPI_ISL_779290,EPI_ISL Genome Research, Dr. Panjwani Dr. Panjwani Center for Shakeel et al _779283 Center for Molecular Medicine Molecular Medicine and and Drug Research Drug Research Pathogen Genomics EPI_ISL_416575 Japanese Quarantine Stations Center, National Institute Tsuyoshi Sekizuka et al of Infectious Diseases Cruys et al. on behalf of the EPI_ISL_1753676 Jessa Jessa Jessa_cmdLab et al Johns Hopkins Hospital Johns Hopkins Hospital EPI_ISL_911881 C. Paul Morris et al Department of Pathology Department of Pathology Carlos Cortes et James Denvir et alEPI_ISL_953403 alEPI_ISL_1528686 Laboratorio de J.W. Ruby Memorial Investigaciones de HospitalWVU and Marshall BaneySwiss Tropical University Combined Genomics and Public Health Core FacilitiesJames Denvir InstituteSalome Hosch et alEPI_ISL_1742526 et Kafkas University, Faculty of alEPI_ISL_1700675,EPI Medicine, Department of _ISL_1700676,EPI_ISL_1 Medical MicrobiologyKafkas 700685,EPI_ISL_1700687 University, Faculty of Medicine, ,EPI_ISL_2002669,EPI_I Department of Medical SL_2002670,EPI_ISL_20 MicrobiologyMurat Karamese 02674,EPI_ISL_2002676, et alEPI_ISL_495424 EPI_ISL_2002686 Kansas Health and EPI_ISL_435045 Laboratorio de WVU and Marshall Environmental LabKansas Alexandr ,EPI_ISL_43504 Investigaciones de J.W. Ruby Memorial Hospital University Combined Health and Environmental Shevtsov et al 6,EPI_ISL_4350 BaneyUniversity Genomics Core Facilities LabMike Grose et 47 Hospital Basel, Clinical alEPI_ISL_1167563,EPI_ISL_ BacteriologyCarlos 2007091 Cortes et Kantonsspital Baden alEPI_ISL_648327,EPI_ AGInstitute of Medical ISL_648334,EPI_ISL_648 Virology, University of 337,EPI_ISL_648339,EPI ZurichVerena Kufner et _ISL_648373,EPI_ISL_64 alEPI_ISL_1791065,EPI_ISL_ 9157 1791066 Laboratorio de la Kantor Pengelola Sumbawa Dirección de TechnoparkNational Institute EpidemiologíaÁrea de of Health Research and Secuenciación del DevelopmentSubangkit et Laboratorio de Virología alEPI_ISL_2047557 del Hospital de Niños Dr. Karolinska Ricardo Gutierrez on UniversitetslaboratorietThe 1. Laboratory of Communicable Diseases Laboratory of Communicable EPI_ISL_1138520 (Estonia); 2. Eurofins Liidia Dotsenko et al Diseases Genomics Europe Sequencing GmbH Greek Genome Center, Laboratory of Biomedical Research EPI_ISL_1716736 Immunohematology, Division of Foundation of the Emmanouil Athanasiadis et al Hematology Academy of Athens (BRFAA) Laboratory of Microbiology, Laboratory of Biology, EPI_ISL_434468,EPI_ISL Medical School, National and Department of Medicine, Kassela K. et al _437890 Kapodistrian University of Democritus University of Athens Thrace genXone SA, Research Laboratory of Molecular Biology, EPI_ISL_875997 & Development Maciej Sykulski et al Diagnostyka sp. z o.o. Laboratory EPI_ISL_801569,EPI_ISL Laboratory of Molecular Virology, _801589,EPI_ISL_801650 MSHS Pathogen Pontificia Universidad Católica Leonardo I. Almonacid et al ,EPI_ISL_801722,EPI_IS Surveillance Program de Chile L_801769 Laboratory of Laboratory of Respiratory EPI_ISL_1181442,EPI_IS Respiratory Viruses and Viruses and Measles, Oswaldo Paola Resende et al L_1181366 Measles, Oswaldo Cruz Cruz Institute, FIOCRUZ Institute, FIOCRUZ Biobank Lab, Department of Molecular Laboratory of Respiratory Biophysics, Faculty of Viruses Teaching and Clinical EPI_ISL_1495053 Biology and Strapagiel Dominik et al Center of the Medical University Environmental of Lodz Protection, University of Lodz Institute of Public Health of Republic of North Laboratory of Virology and EPI_ISL_945547 Macedonia Laboratory of Maja Kuzmanovska et al Molecular Diagnostics Virology and Molecular Diagnostics Laboratory of virology Laboratory of virology and and molecular EPI_ISL_1669957 molecular diagnostics, Institute Kuzmanovska M et al diagnostics, Institute of of Public Health Public Health RSE "National Center for EPI_ISL_1334570,EPI_IS Laboratory of virology, National Biotechnology" and RSE L_1448020,EPI_ISL_1448 Shevtsov Alexandr et al center of expertise "National Center of 018 Expertise" Laboratory of molecular- genetic research, National Center for Laboratory of virology, National EPI_ISL_454599 Expertise, Kazakhstan Abdaliyev Askar et al Center of Expertise National Center for Biotechnology, Kazakhstan RSE "National Center of EPI_ISL_1364612,EPI_IS Laboratory of Virology, National Expertise" and RSE L_1365697,EPI_ISL_1365 Abdaliyev Askar et al center of expertise "National center for 742,EPI_ISL_1489929 Biotechnology" EPI_ISL_576121,EPI_ISL Laboratory, The Bio Arte Laboratory, The Bio Arte Limited Biazzo et al _576120 Limited EPI_ISL_1904299 Labor Doz DDr Stefan Mustafa AGES IMED Vienna Sara Meschini et al Heinrich Pette Institute, EPI_ISL_1862442 Labor Dr. Fenner und Kollegen Leibniz Institute for Alexis Robitaille et al Experimental Virology EPI_ISL_1566762,EPI_IS Labor Dr. Heidrich & Kollegen Robert Koch Institute ? L_1851414 MVZ GmbH Hamburg EPI_ISL_1847409 Labor Dr. Spranger Robert Koch Institute ? EPI_ISL_1725188 Labor Dr. Wisplinghoff - Köln Robert Koch Institute ? Heinrich Pette Institute, EPI_ISL_487429 Labor Kneißler GmbH & Co. KG Leibniz Institute for Thomas Günther et al Experimental Virology University Hospital EPI_ISL_1233630,EPI_IS Labormedizinisches Zentrum Dr Basel, Clinical Tim Roloff et al L_1233673 Risch Bacteriology EPI_ISL_1573247,EPI_IS Labor Prof. Dr. G. Enders MVZ Robert Koch Institute ? L_1724314 GbR Labor ZOTZ|KLIMAS; MVZ EPI_ISL_1140257 Robert Koch Institute ? Düsseldorf-Centrum Institute of EPI_ISL_456157,EPI_ISL LabPLUS Environmental Science Matt Storey et al _456209,EPI_ISL_456389 and Research (ESR) EPI_ISL_1172031,EPI_IS L_1250708,EPI_ISL_1315 322,EPI_ISL_1621304,EP I_ISL_1621305,EPI_ISL_ 1621296,EPI_ISL_162130 6,EPI_ISL_1621315,EPI_I SL_1621319,EPI_ISL_16 Institute of 21314,EPI_ISL_1621307, LabPLUS Environmental Science Rachel Boyle et al EPI_ISL_1621324,EPI_IS and Research (ESR) L_1621325,EPI_ISL_1621 323,EPI_ISL_1904852,EP I_ISL_1904857,EPI_ISL_ 1904859,EPI_ISL_196790 2,EPI_ISL_1967901,EPI_I SL_2103201,EPI_ISL_21 03202 EPI_ISL_548070,EPI_ISL _579105,EPI_ISL_579106 ,EPI_ISL_579116,EPI_IS L_579403,EPI_ISL_57942 Institute of 5,EPI_ISL_622773,EPI_I LabPLUS Environmental Science Xiaoyun Ren et al SL_661258,EPI_ISL_877 and Research (ESR) 209,EPI_ISL_877212,EPI _ISL_877226,EPI_ISL_10 16853,EPI_ISL_1016867 National Institute of Lab RSUP DR Mohammad EPI_ISL_1969245 Health Research and Subangkit et al Hoesin Palembang Development EPI_ISL_547986,EPI_ISL _547994,EPI_ISL_547995 Institute of ,EPI_ISL_548104,EPI_IS LabTests Environmental Science Xiaoyun Ren et al L_548105,EPI_ISL_57942 and Research (ESR) 2,EPI_ISL_622778 Lab voor klinische EPI_ISL_1827216 Lab voor klinische biologie Marija Janevska et al biologie Onderzoeksgroep EPI_ISL_419265 Lab voor klinische biologie Laurens Lambrechts et al Virologie Instituto Adolfo Lutz, Interdiciplinary EPI_ISL_1628364 LACEN do Estado de Goias Claudio Tavares Sacchi et al Procedures Center, Strategic Laboratory Instituto Adolfo Lutz, Interdiciplinary EPI_ISL_943976 LACEN do Estado de Tocantins Claudio Tavares Sacchi et al Procedures Center, Strategic Laboratory Instituto Adolfo Lutz, Interdiciplinary EPI_ISL_1040835 LACEN do Mato Grosso do Sul Claudio Tavares Sacchi et al Procedures Center, Strategic Laboratory Bioinformatics EPI_ISL_1213274 LAFEM/UESC Alessandra P Lamarca et al Laboratory / LNCC EPI_ISL_1904967,EPI_IS CNR Virus des Infections LAM ORIADE ABBAYE ST L_1904969,EPI_ISL_1904 Respiratoires - France Antonin Bal et al MARTIN D'HERES 971 SUD National Institute for EPI_ISL_2013037,EPI_IS Communicable Diseases Lancet Laboratories Amoako DG et al L_2013040 of the National Health Laboratory Service United States Air Force EPI_ISL_738332,EPI_ISL Landstuhl Regional Medical School of Aerospace Anthony Fries et al _738336,EPI_ISL_812266 Center Medicine Laboratory of genomics EPI_ISL_1941773 LA SOURCE Trestan Pillonel et al and metagenomics LATE - Laboratório de LATE - Laboratório de Técnicas Técnicas Especiais - EPI_ISL_884249 Especiais - Hospital Israelita Deyvid Amgarten et al Hospital Israelita Albert Albert Einstein Einstein Latvian Biomedical EPI_ISL_437096 Latvijas Infektoloijas centrs Research and Study Ivars Silamielis et al Centre Universidad Nacional de EPI_ISL_1091784 LDSP Colombia - Laboratorio Andres F. Cardona-Rios et al Genómico One Health Instituto Nacional de Salud- Dirección de EPI_ISL_2155048 LDSP CALDAS Katherine Laiton-Donato et al Investigación en Salud Pública Instituto Nacional de Salud- Dirección de EPI_ISL_1805632 LDSP TOLIMA Katherine Laiton-Donato et al Investigación en Salud Pública Instituto Nacional de Salud- Dirección de EPI_ISL_1582987 LDSP VICHADA Katherine Laiton-Donato et al Investigación en Salud Pública Lebanese American EPI_ISL_498552 Lebanese American University Abi Habib et al University Lednicky Laboratory at Emerging EPI_ISL_447900 University of Florida Lednicky et al Pathogens Institute Instituto de Diagnostico y Referencia EPI_ISL_1516777 LESP Aguascalientes Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1532244 LESP Baja California Sur Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1700816 LESP Campeche Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y EPI_ISL_1494658,EPI_IS Referencia L_2158212,EPI_ISL_2158 LESP Guanajuato Claudia Wong-Arambula et al Epidemiologicos 224 (INDRE) Instituto de Diagnostico y EPI_ISL_1334381,EPI_IS Referencia LESP Guerrero Claudia Wong-Arambula et al L_2157329 Epidemiologicos (INDRE) Instituto de Diagnostico y EPI_ISL_1805491,EPI_IS Referencia LESP Jalisco Claudia Wong-Arambula et al L_2094505 Epidemiologicos (INDRE) Instituto de Diagnostico y LESP Jalisco/Unidad de Referencia EPI_ISL_1805495 Claudia Wong-Arambula et al Patologia Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1504072 LESP Morelos Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1504058 LESP Nuevo Leon Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1857255 LESP Oaxaca Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1424021 LESP Queretaro Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_2157320 LESP Quintana Roo Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y EPI_ISL_2094506,EPI_IS Referencia L_2094507,EPI_ISL_2094 LESP San Luis Potosi Claudia Wong-Arambula et al Epidemiologicos 508 (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1337389 LESP Sinaloa Claudia Wong-Arambula et al Epidemiologicos (INDRE) Instituto de Diagnostico y Referencia EPI_ISL_1821158 LESP Tamaulipas Claudia Wong-Arambula et al Epidemiologicos (INDRE) Latvian Biomedical EPI_ISL_1219574,EPI_IS LIC Research and Study Janis Pjalkovskis et al L_1613125 Centre EPI_ISL_834888,EPI_ISL _1486529,EPI_ISL_14849 18,EPI_ISL_1759112,EPI _ISL_1806530,EPI_ISL_1 806764,EPI_ISL_1829281 Wellcome Sanger ,EPI_ISL_1829220,EPI_I Institute for the COVID- SL_1830471,EPI_ISL_18 Lighthouse Lab in Alderley Park Jacquelyn Wynn et al 19 Genomics UK (COG- 57887,EPI_ISL_1912578, UK) Consortium EPI_ISL_1986886,EPI_IS L_2091685,EPI_ISL_2091 852,EPI_ISL_2117860,EP I_ISL_2119041,EPI_ISL_ 2138697 EPI_ISL_1246284,EPI_IS L_1246268,EPI_ISL_1264 032,EPI_ISL_1294622,EP I_ISL_1316100,EPI_ISL_ 1330057,EPI_ISL_132666 6,EPI_ISL_1327318,EPI_I SL_1327609,EPI_ISL_13 27362,EPI_ISL_1344560, EPI_ISL_1374314,EPI_IS L_1376830,EPI_ISL_1409 773,EPI_ISL_1454606,EP I_ISL_1454202,EPI_ISL_ 1473725,EPI_ISL_147364 8,EPI_ISL_1484542,EPI_I Wellcome Sanger SL_1505036,EPI_ISL_15 Institute for the COVID- Lighthouse Lab in Cambridge Rob Howes et al 04705,EPI_ISL_1504748, 19 Genomics UK (COG- EPI_ISL_1519930,EPI_IS UK) Consortium L_1534778,EPI_ISL_1537 321,EPI_ISL_1534917,EP I_ISL_1583979,EPI_ISL_ 1595472,EPI_ISL_161587 7,EPI_ISL_1631286,EPI_I SL_1632412,EPI_ISL_16 32316,EPI_ISL_1653120, EPI_ISL_1697735,EPI_IS L_1697635,EPI_ISL_1698 521,EPI_ISL_1719066,EP I_ISL_1719089,EPI_ISL_ 1719142,EPI_ISL_183144 3,EPI_ISL_1831538 Wellcome Sanger Institute for the COVID- EPI_ISL_540349 Lighthouse Lab in Glasgow Harper VanSteenhouse et al 19 Genomics UK (COG- UK) consortium EPI_ISL_1042374,EPI_IS L_1264130,EPI_ISL_1544 Wellcome Sanger 580,EPI_ISL_1544515,EP Institute for the COVID- I_ISL_1719573,EPI_ISL_ Lighthouse Lab in Glasgow Harper VanSteenhouse et al 19 Genomics UK (COG- 1742109,EPI_ISL_200612 UK) Consortium 7,EPI_ISL_2118067,EPI_I SL_2119748 EPI_ISL_681636,EPI_ISL _1377698,EPI_ISL_15370 56,EPI_ISL_1594669,EPI _ISL_1631645,EPI_ISL_1 698093,EPI_ISL_1700157 ,EPI_ISL_1790496,EPI_I Wellcome Sanger SL_1790928,EPI_ISL_18 Institute for the COVID- The Lighthouse Lab in Milton Lighthouse Lab in Milton Keynes 30656,EPI_ISL_1830403, 19 Genomics UK (COG- Keynes et al EPI_ISL_1986243,EPI_IS UK) Consortium L_1985465,EPI_ISL_2004 751,EPI_ISL_2004702,EP I_ISL_2021832,EPI_ISL_ 2091582,EPI_ISL_211894 7,EPI_ISL_2138658 Limbach - MVZ Humangenetik EPI_ISL_2117856 Robert Koch Institute ? Ulm Institute of Medical EPI_ISL_1791067 Limmattal Hospital Virology, University of Verena Kufner et al Zurich EPI_ISL_603119,EPI_ISL Lithuanian University of Health Lithuanian University of _636839,EPI_ISL_636846 Sciences Hospital, Department Health Sciences, Lukas Zemaitis et al ,EPI_ISL_636889 of Laboratory Medicine Molecular cardiology lab. EPI_ISL_526391,EPI_ISL COVID-19 Genomics UK Liverpool Clinical Laboratories Sam Haldenby et al _665129 (COG-UK) Consortium CNR Virus des Infections EPI_ISL_2142670 LMS REUNILAB Respiratoires - France Antonin Bal et al SUD Medical Biotechnology LNR National Reference Laboratory, Rabat EPI_ISL_469051,EPI_ISL Laboratory, Mohammed VI Medical and Pharmacy Meriem LAAMARTI et al _469054 University of Health Sciences School, Mohammed The Vth University in Rabat National Institute for EPI_ISL_1827701,EPI_IS Communicable Diseases Lobamba Maphalala GP et al L_1827703 of the National Health Laboratory Service EPI_ISL_451294,EPI_ISL LSUHS Emerging Viral Threat Microbial Genome _574337,EPI_ISL_574366 Jeremy P. Kamil et al Laboratory Sequencing Center ,EPI_ISL_768481 EPI_ISL_1936202,EPI_IS L_1936244,EPI_ISL_1936 Main Chemical Laboratories Main Chemical Mohamed Seadawy et al 258,EPI_ISL_1936275,EP Egypt Army Laboratories Egypt Army I_ISL_1936287 EPI_ISL_1936296,EPI_IS Main Chemical Laboratories Main Chemical L_1936301,EPI_ISL_1936 Sherine Helmy et al Egypt Army Laboratories Egypt Army 356 EPI_ISL_755307,EPI_ISL Maine Health and Environmental Tewhey Lab, The Matluk et al _755480 Testing Laboratory Jackson Laboratory Makmal Kesihatan Awam Integrative EPI_ISL_807151 Kebangsaan, Kementerian Pharmacogenomics Mohd Zaki Salleh et al Kesihatan Malaysia Institute (iPROMISE) EPI_ISL_582124,EPI_ISL Malaysia Genome Malaysia Genome Institute Mohd Noor Mat Isa et al _977593 Institute CSIR-Centre for Cellular EPI_ISL_2156920 Mapmygenome and Molecular Biology- Lamuk Zaveri et al INSACOG Maryland Department of EPI_ISL_509464 Maryland Department of Health Keller et al Health Maryland Department of Health Maryland Department of EPI_ISL_522854 Maryland Department of Health Laboratories Administration et Health al Mashrek Medical Diagnostic Microbial Pathogenomics EPI_ISL_1910617 Jad Koweyes et al Center Lab - LAU Wadsworth Center, New Masonic Medical Research EPI_ISL_677023 York State Nathan Tucker et al Institute Department.of Health Infectious Disease EPI_ISL_460235,EPI_ISL Massachusetts General Hospital Program, Broad Institute Lemieux et al _765803 of Harvard and MIT Max von Pettenkofer Institute, Laboratory for Functional EPI_ISL_1752154,EPI_IS Virology, National Reference Genome Analysis; Dept. L_2006677,EPI_ISL_2095 Max Muenchhoff et al Center for Retroviruses, LMU Genomics; Gene Center 276 Munich of the LMU Munich Minnesota Department Mayo Clinic & Mayo Clinic EPI_ISL_1196245 of Health, Public Health Alexandra Lorentz et al Laboratories Laboratory EPI_ISL_1258019,EPI_IS MB-Cadham Provincial National Microbiology L_1258052,EPI_ISL_1594 Anna Majer et al laboratory Laboratory (NML) 056 EPI_ISL_1847210,EPI_IS MDI Limbach Berlin GmbH; MVZ Robert Koch Institute ? L_1848786 Labor Berlin Maryland Department of Health EPI_ISL_524892 MD PHL MD PHL Laboratories Administration et al Medical Ain Shams EPI_ISL_482772,EPI_ISL Medical Ain Shams Research Research Institute _1109484,EPI_ISL_11096 Institute (MASRI), Ain Shams Hesham Elghazaly et al (MASRI), Ain Shams 28 University University Medical Genetics Medical Genetics Laboratory, Laboratory, Regional Regional Centre of Medical Anca-Lelia (Riza) Costache et EPI_ISL_1508843 Centre of Medical Genetics, Emergency County al Genetics, Emergency Hospital Craiova County Hospital Craiova Laboratory of EPI_ISL_1041001 Medical Laboratory Bruss Lukasz Rabalski et al Recombinant Vaccines Medical Laboratory Medical Laboratory Sciences, EPI_ISL_2107524 Sciences, Arab Al-Jawabreh et al Arab American University American University Medical Laboratory EPI_ISL_873164,EPI_ISL Medical Laboratory Sciences, Sciences, Arab Dumaidi et al _873165 Arab American University American University Medical Research Medical Research Center, Center, Faculty of Faculty of Medicine, Syarif Medicine, Syarif EPI_ISL_707692 Chris Adhiyanto et al Hidayatullah State Islamic Hidayatullah State University Jakarta Islamic University Jakarta EPI_ISL_2102111 Medics Labor AG Clinical Bacteriology Tim Roloff et al EPI_ISL_2129020,EPI_IS Medizinische Laboratorien L_2129024,EPI_ISL_2129 Robert Koch Institute ? Dusseldorf 038 Institute of EPI_ISL_456377,EPI_ISL MedLab Central Ltd Environmental Science Matt Storey et al _456378 and Research (ESR) Med. Labor Prof. Schenk Dr. EPI_ISL_2110379 Robert Koch Institute ? Ansorge & Kollegen NSW Health Pathology - Institute of Clinical Pathology and Medical EPI_ISL_451583 Medlab Pathology CIDM-PH et al. Research; Westmead Hospital; University of Sydney Department for Virology, Molecular Biology and Genome Research, R. G. Lugar Center for Megalab, Molecular and EPI_ISL_1791042 Public Health Research, Giorgi Tomashvili et al Cytogenetics Diagnostics National Center for Disease Control and Public Health (NCDC) of Georgia. EPI_ISL_568881,EPI_ISL _568910,EPI_ISL_569236 MEPHI, Aix Marseille ,EPI_ISL_804503,EPI_IS MEPHI, Aix Marseille University Anthony LEVASSEUR et al University L_896118,EPI_ISL_20367 30 EPI_ISL_1663546,EPI_IS MGM Medical College, Institute of Life Sciences - L_1663548,EPI_ISL_1663 Sunil K. Raghav et al Jamshedpur INSACOG 549 Michigan Department of EPI_ISL_529842,EPI_ISL Michigan Department of Health Health and Human _577565,EPI_ISL_105885 and Human Services, Bureau of Blankenship HM et al Services, Bureau of 6 Laboratories Laboratories Micrbiological Micrbiological Laboratory,Lu`an Laboratory,Lu`an Center EPI_ISL_1069173 Center for Disease Control and Yang Wei et al for Disease Control and Prevention Prevention EPI_ISL_480331,EPI_ISL Microbial Genomics Microbial Genomics Laboratory, _480337,EPI_ISL_480341 Laboratory, Institut Cecilia Salazar et al Institut Pasteur de Montevideo ,EPI_ISL_480345 Pasteur de Montevideo Microbiological Microbiological Diagnostic Unit EPI_ISL_419726 Diagnostic Unit Public Seemann T. et al Public Health Laboratory Health Laboratory Microbiological Diagnostic Unit - EPI_ISL_563530 Public Health Laboratory (MDU- MDU-PHL Seemann et al PHL) EPI_ISL_480770,EPI_ISL _592447,EPI_ISL_593100 ,EPI_ISL_641177,EPI_IS L_812425,EPI_ISL_81242 8,EPI_ISL_854755,EPI_I Microbiological Diagnostic Unit - SL_877571,EPI_ISL_979 Public Health Laboratory (MDU- MDU-PHL Seemann T. et al 360,EPI_ISL_1033152,EP PHL) I_ISL_1055284,EPI_ISL_ 1249999,EPI_ISL_125000 2,EPI_ISL_1250005,EPI_I SL_1913110 Microbiology and Microbiology and Immunology Immunology department, EPI_ISL_418267 department, Pasteur institute in Nguyen et al Pasteur institute in Ho Ho Chi Minh city Chi Minh city Department of Molecular Microbiology and Virology Medicine,Computational EPI_ISL_1181810 Unit,Azienda Ospedale Medicine Elisa Franchin et al Padova,Padova,Italy Group,Univeresity of Padova,Padova,Italy Microbiology & Microbiology & Bioinformatics Bioinformatics and and Biostatistics, Kohat Biostatistics, Kohat University of Science and University of Science EPI_ISL_513925 Khan et al Technology (Pakistan) & and Technology Shanghai Jiao Tong University (Pakistan) & Shanghai (China) Jiao Tong University (China) Microbiology Microbiology Department. Department. Complexo EPI_ISL_2086160 Complexo Hospitalario Alfaya N et al Hospitalario Universitario Universitario de Vigo de Vigo Microbiology Department, EPI_ISL_2136859,EPI_IS Can Ruti SARS-CoV-2 Laboratori Clínic Metropolitana L_2136883,EPI_ISL_2140 Sequencing Hub Marc Noguera-Julian et al Nord. Hospital Universitari 641 (HUGTiP/IrsiCaixa/IGTP) Germans Trias i Pujol Microbiology Department, Can Ruti SARS-CoV-2 EPI_ISL_1661929,EPI_IS Laboratori Clínic Metropolitana Sequencing Hub Marc Noguera-Julian et al L_1999791 Nord. Hospital Universitari (HUGTiP/IrsiCaixa/IGTP) Germans Trias i Pujol. NBCC Sequencing EPI_ISL_848191 Microbiology Lab Dr. Jeff Wrana et al Facility Central Public Health Microbiology Lab, University EPI_ISL_1633322 Lab, National Public Kyriaki Tryfinopoulou et al Hospital ATTIKON Health Organization Microbiology Service, Microbiology Service, Hospital Hospital Universitario EPI_ISL_981938 Universitario Clinico San Cecilio, Adolfo de Salazar et al Clinico San Cecilio, Granada Granada EPI_ISL_1820897 Microvida Microvida Suzan D. Pas et al Institute of EPI_ISL_456214 Middlemore Hospital Environmental Science Matt Storey et al and Research (ESR) EPI_ISL_1082258,EPI_IS Institute of L_1082267,EPI_ISL_1082 Middlemore Hospital Environmental Science Rachel Boyle et al 259,EPI_ISL_1315319 and Research (ESR) EPI_ISL_548002,EPI_ISL _548130,EPI_ISL_548145 ,EPI_ISL_579310,EPI_IS L_579312,EPI_ISL_62278 Institute of 3,EPI_ISL_622787,EPI_I Middlemore Hospital Environmental Science Xiaoyun Ren et al SL_622819,EPI_ISL_649 and Research (ESR) 122,EPI_ISL_755635,EPI _ISL_794626,EPI_ISL_10 16845,EPI_ISL_1016874, EPI_ISL_1016872 Institute of Health and EPI_ISL_718136 Ministry of Health Hospitals David Perera et al Community Medicine EPI_ISL_812769 Ministry of Health Turkey Ministry of Health Turkey Fatma Bayrakdar et al EPI_ISL_1712681,EPI_IS L_1712696,EPI_ISL_1712 910,EPI_ISL_1712939,EP I_ISL_1713159,EPI_ISL_ 1713204,EPI_ISL_171321 Biomedical Research 0,EPI_ISL_1713251,EPI_I Ministry of Public Health / Center (BRC), Qatar BRC: Fatiha M. 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Ahmed et al Hamad Medical Corporation SL_1714380,EPI_ISL_17 Laboratory / Qatar 14383,EPI_ISL_1714404, Genome Project (QGP) EPI_ISL_1714420,EPI_IS L_1714444,EPI_ISL_1714 477,EPI_ISL_1714521 Minnesota Department EPI_ISL_462909,EPI_ISL Minnesota Department of Health, of Health, Public Health Matt Plumb et al _527592 Public Health Laboratory Laboratory EPI_ISL_1362835,EPI_IS Missouri State Public Health Missouri State Public Matthew Sinn et al L_1392837 Laboratory Health Laboratory Mohammed Bin Rashid EPI_ISL_435129,EPI_ISL Al Jalila Genomics University of Medicine and Ahmad Abou Tayoun et al _520680,EPI_ISL_520740 Center Health Sciences MOH - Jaber Al-Ahmad Hospital MOH - Jaber Al-Ahmad EPI_ISL_903378 (Innovation Research Hospital (Innovation Salman Al-Sabah et al Laboratory) Research Laboratory) Molecular Biology and Molecular Biology and Virology Virology lab, Faculty of lab, Faculty of Veterinary Mohammad Hussien Alboom et EPI_ISL_904015 Veterinary Medicine, Medicine, Jordan University of al Jordan University of Science and Technology Science and Technology Molecular diagnostic laboratory of Federal Budget Institution of Group of Genomics and Science "Central Research Postgenomic EPI_ISL_2031922,EPI_IS Institute of Epidemiology" of The Technologies of Central Samojlov A.E. et al L_2031976 Federal Service on Customers' Research Institute of Rights Protection and Human Epidemilology Well-being Surveillance EPI_ISL_2006673,EPI_IS L_2101347,EPI_ISL_2105 Molecular Diagnostics Pathology Molecular Diagnostics 953,EPI_ISL_2105942,EP Department Mater Dei Hospital Pathology Department G Zahra et al I_ISL_2105944,EPI_ISL_ Malta Mater Dei Hospital Malta 2105881 KRISP, KZN Research EPI_ISL_467448,EPI_ISL Molecular Diagnostics Services Innovation and Giandhari J et al _482718 (MDS) Sequencing Platform EPI_ISL_1365032,EPI_IS Molecular diagnostic unit L_1365034,EPI_ISL_1365 Molecular diagnostic unit for viral for viral haemorrhagic 023,EPI_ISL_1663660,EP haemorrhagic fevers and fevers and emerging Chantal Akoua-Koffi et al I_ISL_1663662,EPI_ISL_ emerging viruses, Bouaké CHU viruses, Bouaké CHU 1663669,EPI_ISL_166366 Laboratory Laboratory 8,EPI_ISL_1663649 EPI_ISL_614350,EPI_ISL Project group Molecular diagnostic unit for viral _614394,EPI_ISL_614395 Epidemology of Highly haemorrhagic fevers and ,EPI_ISL_681833,EPI_IS Pathogenic Chantal Akoua-Koffi et al emerging viruses, Bouaké CHU L_681834,EPI_ISL_16625 Microorganisms, Robert Laboratory 86,EPI_ISL_1662591 Koch-Institute Centro Asistencial Docente y de Molecular Medicine Laboratory, EPI_ISL_681684 Investigacion, Jorge González et al University of Magallanes Universidad de Magallanes Molecular Microbiology and Food EPI_ISL_802556,EPI_ISL Research Laboratory Facultad de Ciencias de Dayán Sanhueza et al _802563 (MMFRLAB) - Universidad San la Vida, UNAB Sebastián Collaboration between the University of Melbourne at The Peter Doherty Institute for EPI_ISL_406844 Monash Medical Centre Caly et al Infection and Immunity, and the Victorian Infectious Disease Reference Laboratory Montana Public Health Montana Public Health EPI_ISL_1577330 Joy Ritter et al Laboratory Laboratory EPI_ISL_889358,EPI_ISL Institute of Applied Motol University Hospital Petr Klempt et al _889368 Biotechnologies a.s. 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National Institute of Public Health - National NZOZ Medyczne Laboratorium Institute of Hygiene; 2. EPI_ISL_1746696 Wokowicz Tomasz et al Diagnostyczne; Eurofins Genomics Europe Sequencing GmbH COVID-19 Network EPI_ISL_1073986,EPI_IS Office of Diseases Prevention Investigations (CONI) Elizabeth Batty et al L_1074020 and Control Region 4 Saraburi Alliance COVID-19 Network Office of Diseases Prevention EPI_ISL_882772 Investigations (CONI) Kamolthip Atsawawaranunt et al and Control Region 4 Saraburi Alliance EPI_ISL_526101,EPI_ISL Oregon SARS-CoV-2 _667418,EPI_ISL_667468 OHSU Lab Services Molecular Genome Sequencing Brendan L. 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Lugar Center for Public Public Health Research, Health Research, National National Center for EPI_ISL_416480 Center for Disease Control and Ann Machablishvili et al Disease Control and Public Health (NCDC) of Public Health (NCDC) of Georgia. Georgia. R. G. Lugar Center for R. G. Lugar Center for Public Public Health Research, Health Research, National EPI_ISL_415641,EPI_ISL National Center for Center for Disease Control and Nato Kotaria et al _415643 Disease Control and Public Health (NCDC) of Public Health (NCDC) of Georgia. Georgia. Infectious Disease EPI_ISL_872690,EPI_ISL Rhode Island Department of Program, Broad Institute Lemieux et al _872727 Health of Harvard and MIT “Riga East Clinical University Hospital, “Riga East Clinical University National Microbiology EPI_ISL_1970713 Hospital, National Microbiology Reference Laboratory; irts Šenders et al Reference Laboratory” Eurofins Genomics Europe Sequencing GmbH” Riga East University Riga East University Hospital- Hospital-National National Microbiology Reference Microbiology Reference EPI_ISL_1590583 irts Šenders et al Laboratory; Eurofins Genomics Laboratory; Eurofins Europe Sequencing GmbH Genomics Europe Sequencing GmbH EPI_ISL_485201,EPI_ISL Ginkgo Bioworks Clinical River Road Testing Lab Rebecca C. Christofferson et al _485247 Laboratory [Romania, Bucharest] [Romania, Bucharest] National EPI_ISL_468143,EPI_ISL National Institute for Institute for Infectious Diseases Leontina Banica et al _468145 Infectious Diseases “Prof. Dr. Matei Bal” “Prof. Dr. Matei Bal” Rondônia Central Public Health Molecular Virology Laboratory (LACEN/RO), Laboratory of Oswaldo EPI_ISL_514136 vinculated to State Health Luan Felipo Botelho-Souza et al Cruz Foundation of Secretariat of Rondônia Rondônia (SESAU/RO) EPI_ISL_521860,EPI_ISL _521862,EPI_ISL_521861 ,EPI_ISL_779406,EPI_IS Royal Darwin Hospital Pathology MDU-PHL Meumann et al L_779410,EPI_ISL_81242 3,EPI_ISL_854745 EPI_ISL_577607 Royal Hobart Hospital Royal Hobart Hospital Cooley L. et al EPI_ISL_522565,EPI_ISL _522569,EPI_ISL_522608 ,EPI_ISL_522679,EPI_IS Royal Hobart Hospital L_522686,EPI_ISL_52269 MDU-PHL Cooley L. et al Microbiology Department 3,EPI_ISL_522705,EPI_I SL_522756,EPI_ISL_522 762,EPI_ISL_522764 RSE "National Center for RSE "National Center for EPI_ISL_454509 Alexandr Shevtsov et al Biotechnology" Biotechnology" Eijkman Institute for Molecular Biology, Ministry of Research and EPI_ISL_574607 RS Husada Frilasita A Yudhaputri et al Technology/National Agency for Research and Innovation Eijkman Institute for Molecular Biology, RS Mitra Keluarga Gading Ministry of Research and EPI_ISL_1622430 Muhammad Rezki Rasyak et al Serpong Technology/National Agency for Research and Innovation Eijkman Institute for Molecular Biology, Ministry of Research and EPI_ISL_1622432 RS Sentra Medika Cikarang Muhammad Rezki Rasyak et al Technology/National Agency for Research and Innovation Institute of Tropical EPI_ISL_529964 RSUD Bangil Pasuruan Disease, Universitas Aldise M Nastri et al Airlangga Institute of Tropical EPI_ISL_458081 RSUD Bangil Pasuruan Disease, Universitas Jezzy R Dewantari et al Airlangga National Institute of RSUD Siti Fatimah Prov EPI_ISL_2047572 Health Research and Hana Apsari Pawestri et al Sumatera Selatan Development National Institute of EPI_ISL_2047517 RSUP H Adam Malik Medan Health Research and Kartika Dewi Puspa et al Development National Institute of EPI_ISL_1969246,EPI_IS Rumah Sakit Umum Daerah Health Research and Subangkit et al L_1969247 Palangkaraya Development Rural Health Unit - Calauan, Research Institute for EPI_ISL_491298 Tujan et al Laguna Tropical Medicine Pathogen Genomics Saitama Prefectural Institute of EPI_ISL_1427492 Center, National Institute Tsuyoshi Sekizuka et al Public Health of Infectious Diseases Pathogen Genomics Sakai City Institute of Public EPI_ISL_1933482 Center, National Institute Tsuyoshi Sekizuka et al Health of Infectious Diseases EPI_ISL_749238,EPI_ISL _749474,EPI_ISL_749706 Institut Pasteur de ,EPI_ISL_751011,EPI_IS Sanatorio Americano Daiana Mir et al Montevideo L_750172,EPI_ISL_75017 3 San Diego County Public Health Andersen lab at Scripps SEARCH Alliance San Diego EPI_ISL_667032 Laboratory Research with Tracy Basler et al San Gallicano Dermatological INMI Lazzaro EPI_ISL_2035746 F Messina et al Institute I.F.O. Spallanzani IRCCS San Gallicano Dermatological INMI Lazzaro EPI_ISL_2035749 O Butera et al Institute I.F.O. Spallanzani IRCCS Sanitary-Epidemiological And Center of Genomics and EPI_ISL_1477049 Public Health Department Of bioinformatics, Mirzakamol S Ayubov et al Tashkent Region, Uzbekistan Bioinformatics laboratory Santa Clara County Public EPI_ISL_1821470 Chan-Zuckerberg Biohub CZB Cliahub Consortium et al Health Laboratory EPI_ISL_451088,EPI_ISL _451127,EPI_ISL_467987 ,EPI_ISL_467989,EPI_IS L_467994,EPI_ISL_46802 4,EPI_ISL_468037,EPI_I SL_468039,EPI_ISL_468 041,EPI_ISL_483075,EPI _ISL_483110,EPI_ISL_49 2132,EPI_ISL_508606,EP I_ISL_510544,EPI_ISL_5 13912,EPI_ISL_513913,E SA Pathology SA Pathology Lex Leong et al PI_ISL_602577,EPI_ISL_ 622762,EPI_ISL_654806, EPI_ISL_732961,EPI_ISL _755570,EPI_ISL_755571 ,EPI_ISL_812358,EPI_IS L_1029956,EPI_ISL_1704 786,EPI_ISL_1704675,EP I_ISL_1704803,EPI_ISL_ 1704804,EPI_ISL_170480 6,EPI_ISL_1706367 EPI_ISL_455603 SA Pathology VPRL Beard et al SARS-CoV-2 Sequencing SARS-CoV-2 EPI_ISL_1214244 Castilla y Leon-Spain Sequencing Castilla y Antonio Orduña-Domingo et al Consortium Leon-Spain Consortium EPI_ISL_1427800,EPI_IS L_1927400,EPI_ISL_1927 401,EPI_ISL_1927403,EP I_ISL_1927404,EPI_ISL_ 1927405,EPI_ISL_192740 7,EPI_ISL_1927408,EPI_I SL_1927410,EPI_ISL_19 27411,EPI_ISL_1927422, EPI_ISL_1927423,EPI_IS L_1927433,EPI_ISL_1927 424,EPI_ISL_1927436,EP I_ISL_1927426,EPI_ISL_ 1927438,EPI_ISL_192743 9,EPI_ISL_1927441,EPI_I SL_1927442,EPI_ISL_19 27444,EPI_ISL_1927445, SARS-CoV-2 testing team, Pathogen Genomics EPI_ISL_2131670,EPI_IS National Institute of Infectious Center, National Institute Tsuyoshi Sekizuka et al L_2131691,EPI_ISL_2131 Diseases of Infectious Diseases 693,EPI_ISL_2131684,EP I_ISL_2131695,EPI_ISL_ 2131697,EPI_ISL_213170 7,EPI_ISL_2131723,EPI_I SL_2131726,EPI_ISL_21 31731,EPI_ISL_2131732, EPI_ISL_2131734,EPI_IS L_2131735,EPI_ISL_2131 737,EPI_ISL_2131750,EP I_ISL_2131743,EPI_ISL_ 2131772,EPI_ISL_213177 5,EPI_ISL_2131778,EPI_I SL_2131781,EPI_ISL_21 31782,EPI_ISL_2131783, EPI ISL 2131790,EPI IS SC Department of Health SC Department of Health and EPI_ISL_491108 and Environmental Flores et al Environmental Control Control Centers for Disease Control and Prevention SC Dept of Health and Env. EPI_ISL_1678135 Division of Viral Mili Sheth et al Control-Bureau of Laboratories Diseases, Pathogen Discovery EPI_ISL_1009128,EPI_IS School of Pharmacy School of Pharmacy Ahmed Kandeil et al L_1009160 Veterinary Specialized EPI_ISL_661189,EPI_ISL Scientific Veterinary Institute Institute "Kraljevo", Vidanovic et al _661190,EPI_ISL_904009 Novi Sad Serbia SC (UCO) Igiene e Sanità ARGO Laboratorio EPI_ISL_1647029 Pubblica (funzione integrata con Genomica ed Licastro D et al SC Microbiologia e Virologia) Epigenomica Sequencing and Bioinformatics Service Servicio de Microbiología. and Molecular EPI_ISL_420121 Consorcio Hospital General Vicente Soriano Chirona et al Epidemiology Research Universitario de Valencia Group. FISABIO-Public Health Servicio de Microbiología. Hospital Universitario Donostia. OSI Donostialdea. Área de EPI_ISL_468934,EPI_ISL Enfermedades Infecciosas, SeqCOVID-SPAIN Gustavo Cilla et al _468938 Grupo de Infección Respiratoria consortium/IBV(CSIC) y Resistencia Antimicrobiana. Instituto de Investigación Sanitaria Biodonostia. Inmaculada de Toro Peinado. Servicio de Microbiología. HRU SeqCOVID-SPAIN MªConcepción Mediavilla EPI_ISL_510058 de Málaga. Servicio Andaluz de consortium/IBV(CSIC) Gradolph. Begoña Palop Borrás Salud et al EPI_ISL_420599,EPI_ISL _849299,EPI_ISL_849301 ,EPI_ISL_849317,EPI_IS L_849321,EPI_ISL_84935 8,EPI_ISL_856756,EPI_I SL_856781,EPI_ISL_210 Instituto Nacional 4757,EPI_ISL_2104770,E Servicio Virosis Respiratorias- Enfermedades Baumeister E. et al PI_ISL_2104777,EPI_ISL Departamento Virología-INEI Infecciosas C.G.Malbran _2105572,EPI_ISL_21334 01,EPI_ISL_2136073,EPI _ISL_2140071,EPI_ISL_2 158778,EPI_ISL_2158846 ,EPI_ISL_2158739,EPI_I SL_2158768 Istituto Zooprofilattico SERVIZIO DI IGIENE E SANITÀ Sperimentale EPI_ISL_436728 Lorusso A et al PUBBLICA ASL Teramo dell'Abruzzo e Molise "G.Caporale" Istitituto Zooprofilattico Servizio Igiene Epidemiologia e Sperimentale EPI_ISL_849659 Lorusso A et al Sanità Pubblica (SIESP)-L'Aquila dell'Abruzzo e Molise "G.Caporale" Zhejiang Provincial EPI_ISL_497950 Shaoxing CDC Center for Disease Yin Chen et al Control and Prevention Department of Pathology Shaoxing Center for Disease and Laboratory EPI_ISL_463902 Jinkun Chen et al Control and Prevention Medicine, University of California Los Angeles Andersen lab at Scripps SEARCH Alliance San Diego EPI_ISL_636120 Sharp HealthCare Laboratory Research with Aaron Harding et al Molecular Surveillance EPI_ISL_582125 Sheikh Khalifa Medical City lab Sheikh Khalifa Amirtharaj Francis et al Medical City EPI_ISL_582608,EPI_ISL Molecular/Surveillance _582609,EPI_ISL_582611 Sheikh Khalifa Medical City lab Sheikh Khalifa Amirtharaj Francis et al ,EPI_ISL_582616 Medical City EPI_ISL_1533610 Shiraz University Shiraz University Abozar Ghorbani et al Istituto Zooprofilattico SIESP DIPARTIMENTO DI Sperimentale EPI_ISL_1391211 PREVENZIONE TERAMO Lorusso A et al dell’Abruzzo e Molise “G. TERAMO(TERAMO) Caporale” Bioinformatics EPI_ISL_470592 Simile Alexandra Gerber et al Laboratory / LNCC EPI_ISL_1749436,EPI_IS Department of Singapore General Hospital Nurdyana Abdul Rahman et al L_1969690 Microbiology National Public Health EPI_ISL_406973 Singapore General Hospital Mak et al Laboratory Institute of Tropical EPI_ISL_956278,EPI_ISL Siti Khodijah Hospital Disease, Universitas Aldise M Nastri et al _1159383 Airlangga Universidad Nacional de EPI_ISL_1629723 SOMER Colombia - Laboratorio Simón Villegas Velásquez et al Genómico One Health Robert Moller et alEPI_ISL_1941720 South Dakota Public Health LaboratoryUniversity of Minnesota Genomics CenterDaryl M. Gohl et alEPI_ISL_1017003 South Eastern Area Laboratory ServicesNSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of SydneyCIDM-PH et al.EPI_ISL_455091,EPI_ISL_ EPI_ISL_491047 455099 Sonic Reference ,EPI_ISL_49108 Lobiuc Andrei et al Sonic Reference Laboratory South Eastern Area Laboratory Laboratory 8,EPI_ISL_4910 Services (SEALS)NSW 90 Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of SydneyCIDM-PH et al.EPI_ISL_490021,EPI_ISL_ 490030,EPI_ISL_526144,EPI_I SL_593712,EPI_ISL_667782,E PI_ISL_768600,EPI_ISL_19044 55,EPI_ISL_1904449,EPI_ISL_ 1904458,EPI_ISL_1904454,EPI _ISL_1904457,EPI_ISL_19044 62,EPI_ISL_1904465,EPI_ISL_ 1904469 Southern Community Labs Institute for Medical Research, Infectious Disease Research Sultanah Aminah Hospital, Johor EPI_ISL_2091024 Centre, National Suppiah J et al Bahru Institutes of Health, Ministry of Health Malaysia Institute for Medical Research, Infectious Disease Research EPI_ISL_1972356 Sungai Buloh Hospital Centre, National Suppiah J et al Institutes of Health, Ministry of Health Malaysia Supratech Micropath Laboratory Gujarat Biotechnology EPI_ISL_1544125 Research Institute Pvt Ltd, Sonal Sharma et al Research Centre Ahmedabad Universidad Nacional de EPI_ISL_1629737 SURA Colombia - Laboratorio Karl A Ciuoderis et al Genómico One Health The Public Health EPI_ISL_475543 Surbrunns VC Oskar Karlsson Lindsjo et al Agency of Sweden EPI_ISL_1659751,EPI_IS L_1808654,EPI_ISL_1808 658,EPI_ISL_1808686,EP I_ISL_1808683,EPI_ISL_ Swedish national genomic 1902079,EPI_ISL_189927 The Public Health surveillance program of SARS- Maximilian Riess et al 9,EPI_ISL_1899297,EPI_I Agency of Sweden CoV-2 SL_2032727,EPI_ISL_20 34589,EPI_ISL_2033405, EPI_ISL_2034582,EPI_IS L_2033751 Swedish national genomic Swedish national genomic The Public Health EPI_ISL_1192957 surveillance program of SARS- surveillance program of SARS- Agency of Sweden CoV-2 CoV-2 et al National Institute of EPI_ISL_1969243 Swissbel Hotel Airport Health Research and Vivi Setiawaty et al Development NSW Health Pathology - Sydney South West Pathology Institute of Clinical Service (SSWPS) - Liverpool Pathology and Medical EPI_ISL_526206 CIDM-PH et al. Hospital - NSW Health Research; Westmead Pathology Hospital; University of Sydney EPI_ISL_1919655,EPI_IS SYNLAB GIGA Medical Genomics Keith Durkin et al L_1970794 Instituto Nacional de Salud - Dirección de EPI_ISL_845627 SYNLAB COLOMBIA S.A.S Katherine Laiton-Donato et al Investigación en Salud Pública 1. Laboratory of EPI_ISL_1190907,EPI_IS Communicable Diseases L_1319300,EPI_ISL_2107 Synlab Eesti OÜ (Estonia); 2. Eurofins Liidia Dotsenko et al. 118 Genomics Europe Sequencing GmbH EPI_ISL_2095553 Synlab Haut de France UMR 8199/1283 EGID Derhourhi Mehdi et al EPI_ISL_2117300 SYNLAB Jena Oncoscreen Robert Koch Institute ? EPI_ISL_2123440,EPI_IS SYNLAB Labor München Robert Koch Institute ? L_2123616 Zentrum LMZ EPI_ISL_1571754,EPI_IS SYNLAB MVZ Leinfelden- Robert Koch Institute ? L_2129841 Echterdingen EPI_ISL_1728331,EPI_IS SYNLAB MVZ Leverkusen Robert Koch Institute ? L_2124794 EPI_ISL_1641831,EPI_IS SYNLAB MVZ Weiden Robert Koch Institute ? L_2126465 Takayuki Hishiki Kanagawa Takayuki Hishiki EPI_ISL_412968 Prefectural Institute of Public Kanagawa Prefectural Hishiki et al Health Institute of Public Health Reference laboratory for EPI_ISL_2162143 Taldykorgan Anti-Plague Station the control of viral Nazym Tleumbetova et al infections Inciensa, Instituto Costarricense de TAMIZAJE COMUNITARIO - EPI_ISL_914796 Investigación y Francisco Duarte et al PASO CANOAS Enseñanza en Nutrición y Salud Inciensa, Instituto Costarricense de TAMIZAJE COMUNITARIO- EPI_ISL_682261 Investigación y Francisco Duarte et al PASO CANOAS Enseñanza en Nutrición y Salud Tampa General Hospital Tampa General Hospital EPI_ISL_1379449 Esoteric Research & Grant Vestal et al Esoteric Lab Development Lab Technical Support Units Technical Support Units for for Scientific Research Scientific Research (UATRS), (UATRS), National EPI_ISL_966940 Touil et al National Centre for Scientific and Centre for Scientific and Technical Research (CNRST) Technical Research (CNRST) Temporary Specimen Collection Hong Kong Department EPI_ISL_733572 Alan K.L. Tsang et al Centre of Health Thai Red Cross Emerging Thai Red Cross Infectious Diseases Health Emerging Infectious EPI_ISL_937538,EPI_ISL Science Centre, Chulalongkorn Diseases Center and Opass Putcharoen et al _1296450 Hospital, Faculty of Medicine, Faculty of Medicine, Chulalongkorn University Chulalongkorn University Carrington Lab, Department of EPI_ISL_756311,EPI_ISL The Caribbean Public Health PreClinical Sciences, _756357,EPI_ISL_149022 Nikita S. D. Sahadeo et al Agency Faculty of Medical 6 Sciences, The University of the West Indies KRISP, KZN Research Thembalethu CDC wc THC & EPI_ISL_696519 Innovation and Arash Iranzadeh et al NHLS/UCT Sequencing Platform Philippine Genome EPI_ISL_2155984 The Medical City - Ortigas Francis A. Tablizo et al Center EPI_ISL_1838050,EPI_IS L_1838052,EPI_ISL_1838 097,EPI_ISL_1838131,EP CSIR-Centre for Cellular The National Centre for Cell I_ISL_1838134,EPI_ISL_ and Molecular Biology- Dhiraj Paul et al Science 1838156,EPI_ISL_183815 INSACOG 8,EPI_ISL_1838292,EPI_I SL_1838345 EPI_ISL_577626,EPI_ISL _577630,EPI_ISL_584076 The National Institute of Public State Veterinary Institute ,EPI_ISL_584081,EPI_IS Nagy et al Health Prague L_626589,EPI_ISL_85066 4 EPI_ISL_827291,EPI_ISL The National University Hospital deCODE genetics Daniel F Gudbjartsson et al _830235,EPI_ISL_829948 of Iceland Stefan cel Mare The Oncology Institute "Prof. Dr. EPI_ISL_891225 University Metagenomics Lobiuc Andrei et al Ion Chiricuta" Cluj Napoca Lab The Republican Research and WHO National Influenza EPI_ISL_754233,EPI_ISL Practical Center for Centre Russian Elena Gasich et al _754235 Epidemiology and Microbiology Federation (RRPCEM) National Institute for Communicable Diseases EPI_ISL_1196006 TLC Clinic Maphalala GP et al of the National Health Laboratory Service Tochigi Prefectural Institute of Pathogen Genomics EPI_ISL_480038 Public Health and Environmental Center, National Institute Tsuyoshi Sekizuka et al Science of Infectious Diseases EPI_ISL_538254,EPI_ISL Center for Global Health, _560358,EPI_ISL_122525 TriCore Reference Laboratories University of New Mexico Daryl Domman et al 9 Health Sciences Center Carrington Lab, EPI_ISL_717692,EPI_ISL Department of _717695,EPI_ISL_717694 Trinidad Public Health PreClinical Sciences, ,EPI_ISL_717700,EPI_IS Nikita S. D. Sahadeo et al Laboratory Faculty of Medical L_717697,EPI_ISL_75636 Sciences, The University 3 of the West Indies EPI_ISL_436099,EPI_ISL TSGH-CP molecular lab TSGH-CP molecular lab Cherng-Lih Perng et al _436108,EPI_ISL_447252 TSGH-CP molecular lab, TSGH-CP molecular lab, Division of Clinical EPI_ISL_437336 Division of Clinical Pathology, Cherng-Lih Perng et al Pathology, Department Department of Pathology of Pathology UAB Medicina practica National Public Health EPI_ISL_1960202 Lukas Zemaitis et al laboratorija Surveillance Laboratory EPI_ISL_737956,EPI_ISL _737942,EPI_ISL_737965 ,EPI_ISL_737969,EPI_IS Uganda Central Public Health MRC/UVRI & LSHTM L_737976,EPI_ISL_73800 Lab and Uganda Virus Research Matthew Cotten et al Uganda Research Unit 8,EPI_ISL_738023,EPI_I Institute SL_738028,EPI_ISL_738 038 EPI_ISL_451188,EPI_ISL MRC/UVRI & LSHTM Uganda Virus Research Institute Dan Lule Bugembe et al _451199,EPI_ISL_451201 Uganda Research Unit EPI_ISL_628761,EPI_ISL _648124,EPI_ISL_648125 UHAS COVID-19 Lab UHAS COVID-19 Lab Kwabena O. Duedu et al ,EPI_ISL_861460,EPI_IS L_861459 Istituto Zooprofilattico ULSS 7 Pedemontana - Distretto EPI_ISL_1745236 Sperimentale delle Adelaide Milani et al 2 Venezie UMC Groningen, Clinical UMC Groningen, Clinical EPI_ISL_1993936,EPI_IS Virology, Department of Medical Virology, Department of L_2099526,EPI_ISL_2132 Hubert Niesters et al Microbiology and Infection Medical Microbiology 653 Prevention and Infection Prevention Instituto Nacional de Consorcio Mexicano de Enfermedades Vigilancia Genómica (CoViGen- Unidad de Investigación Respiratorias (INER): EPI_ISL_1287766 Mex). Authors (in alphabetical Biomédica de Zacatecas (UIBZ) Centro de Investigación order): Julio Elias Alvarado- en Enfermedades Yaah et al Infecciosas (CIENI) Centro de Investigación Consorcio Mexicano de en Enfermedades Vigilancia Genómica (CoViGen- Unidad de Investigación Médica Infecciosas (CIENI), EPI_ISL_2091233 Mex). Authors (in alphabetical de Yucatán (UIMY) Instituto Nacional de order): Julio Elias Alvarado- Enfermedades Yaah et al Respiratorias (INER) Instituto Nacional de Consorcio Mexicano de Enfermedades Vigilancia Genómica (CoViGen- EPI_ISL_1585433,EPI_IS Unidad de Investigación Médica Respiratorias (INER): Mex). Authors (in alphabetical L_1585434 de Yucatán (UIMY) Centro de Investigación order): Julio Elias Alvarado- en Enfermedades Yaah et al Infecciosas (CIENI) Unidade de apoio ao diagnóstico Bioinformatics EPI_ISL_2101685 Luiz G P de Almeida et al da COVID – UNADIG Laboratory / LNCC Instituto Adolfo Lutz, Unidade de Pronto Atendimento Interdiciplinary EPI_ISL_693226 Claudio Tavares Sacchi et al Sao José Procedures Center, Strategic Laboratory Instituto Nacional de UNIDAD HEMATOLOGICA Salud - Dirección de EPI_ISL_794656 Katherine Laiton-Donato et al ESPECIALIZADA Investigación en Salud Pública Norwegian Institute of EPI_ISL_590917 Unilabs Laboratory Medicine Public Health, Kathrine Stene-Johansen et al Department of Virology United States Air Force EPI_ISL_812563,EPI_ISL United States Air Force School School of Aerospace Anthony Fries et al _812569,EPI_ISL_812575 of Aerospace Medicine Medicine Unit for Laboratory Unit for Laboratory Development Development and EPI_ISL_411951 and Technology Transfer, Public Technology Transfer, Bengner et al Health Agency of Sweden Public Health Agency of Sweden Respiratory Virus Unit, Unit of lab surveillance of viral National Infection PHE Covid Sequencing Team EPI_ISL_1299863 emerging diseases, National Lab Service, Public Health et al of Influenza England Ontario Institute for EPI_ISL_526268 Unity Health Toronto Ramzi Fattouh et al Cancer Research Laboratory of UNIVERSIDADE FEDERAL DE Respiratory Viruses and EPI_ISL_2157423 Paola Resende et al VIÇOSA Measles, Oswaldo Cruz Institute, FIOCRUZ International Centre for Universidad Iberoamericana, Genetic Engineering and EPI_ISL_523812 Instituto de Medicina Tropical & Biotechnology (ICGEB) Robert Paulino-Ramirez et al Salud Global and ARGO Open Lab Platform Antonio Grimaldi Patrizia Annunziata Francesco Panariello Teresa Giuliano Michele Cennamo Valentina Università Federico II - Telethon Institute of Bouche Chiara Colantuono EPI_ISL_1692748 Dipartimento di scienze mediche Genetics and Medicine Lucio Di Filippo Mariano traslazionali - Napoli (TIGEM) Fiorenza Anna Manfredi Marcello Salvi Giuseppe Portella Andrea Ballabio Davide Cacchiarelli et al Institute of Medical EPI_ISL_1939228 UniversitätsSpital Zürich Verena Kufner et al Virology University Clinical University Clinical Research EPI_ISL_812967 Research Center, Diarra et al Center, University of Sciences University of Sciences University Hospital University Hospital Basel, EPI_ISL_581980 Basel, Clinical Madlen Stange et al Clinical Virology Bacteriology University Hospital University Hospital Basel, EPI_ISL_931063 Basel, Clinical Tim Roloff et al Clinical Virology Bacteriology Center of Medical Microbiology, Virology, EPI_ISL_631388 University Hospital Cologne Maximilian Damagnez et al and Hospital Hygiene, University of Duesseldorf Ruer Boškovic Institute; Forensic Science Centre EPI_ISL_710565,EPI_ISL University Hospital Dubrava Ivan Vueti; University Robert Beluži et al _710571 of Zagreb Faculty of Science University Hospitals of EPI_ISL_415457,EPI_ISL University Hospitals of Geneva Geneva Laboratory of Laubscher F. et al _415699 Laboratory of Virology Virology EPI_ISL_1296150,EPI_IS HUG, Laboratory of L_1369531,EPI_ISL_1811 University Hospitals of Geneva, Virology and the 202,EPI_ISL_1963298,EP Samuel Cordey et al Laboratory of Virology Health2030 Genome I_ISL_1963299,EPI_ISL_ Center 1963300 Heinrich Pette Institute, EPI_ISL_776042,EPI_ISL University Medical Center Leibniz Institute for Alexis Robitaille et al _959973 Hamburg Eppendorf Experimental Virology Microbial Genomics Lab, EPI_ISL_1072985 University of Balamand Lebanese American Mira El Chaar et al University, Byblos University of Bari University of Bari Biomedical EPI_ISL_1922125 Biomedical Sciences and Chironna M. et al Sciences and Human Oncology Human Oncology Central Biological Research Laboratory EPI_ISL_1133254 University of Chittagong and Department of H. M. Abdullah Al Masud et al Biochemistry and Molecular Biology University of Debrecen, National Laboratory of EPI_ISL_671423,EPI_ISL Department of Medical Virology, Szentágothai Endre Gábor Tóth et al _671453 Microbiology Research Centre Quadram Institute EPI_ISL_2100508 University of Health Sciences Muhammad Bilal Sarwar et al Bioscience University of Sarajevo, University of Sarajevo, Veterinary Faculty, Veterinary Faculty, Laboratory EPI_ISL_1016970 Laboratory for Molecular Goletic S. et al for Molecular Diagnostic and Diagnostic and Research Research Laboratory Laboratory University of Sarajevo, EPI_ISL_955155,EPI_ISL University of Sarajevo, Veterinary Faculty, _955144,EPI_ISL_955142 Veterinary Faculty, Laboratory Laboratory for Molecular Goleti T. et al ,EPI_ISL_955148,EPI_IS for Molecular Diagnostic and Diagnostic and Research L_955146 Research Laboratory Laboratory National Laboratory of EPI_ISL_677748,EPI_ISL University of Szeged, Institute of Virology, Szentágothai Endre Gábor Tóth et al _677759 Clinical Microbiology Research Centre EPI_ISL_484835,EPI_ISL University of Wisconsin-Madison University of Wisconsin- _509829,EPI_ISL_509953 AIDS Vaccine Research Madison AIDS Vaccine Gage Moreno et al ,EPI_ISL_541544,EPI_IS Laboratories Research Laboratories L_788901 EPI_ISL_977256,EPI_ISL _977272,EPI_ISL_977325 ,EPI_ISL_977287,EPI_IS University of Zambia, School of Mulenga Mwenda-Chimfwembe UNZAVET and PATH L_977421,EPI_ISL_97733 Veterinary Medicine et al 6,EPI_ISL_977339,EPI_I SL_977355 EPI_ISL_463001 unknown Clinical virology Fares et al Department of Virology, Public Health EPI_ISL_468160 unknown Laboratories Division, Massab Umair et al National Institute of Health EPI_ISL_454216,EPI_ISL _1739160,EPI_ISL_17391 Instituto Nacional de unknown Borges et al 70,EPI_ISL_1739180,EPI Saude (INSA) _ISL_1739182 Laboratoire Sciences et Technologies de la Santé (STS) Institut EPI_ISL_476559 unknown Supérieur des Sciences Hajar Lemriss et al de la Santé Université Hassan 1er, Settat, Morocco Microbiology, Canterbury EPI_ISL_483060 unknown Dilcher et al Health Laboratories EPI_ISL_1938308 unknown PHV-FSS Son Nguyen et al Microbial Genome Sequencing Center; EPI_ISL_1373715,EPI_IS UPMC Clinical Microbiology Microbial Genomic Lee H. Harrison et al L_1732346 Laboratory Epidemiology Laboratory, University of Pittsburgh National Institute of Health, Department of Urban Institute for Disease EPI_ISL_708817 Medical Sciences, Pilailuk Okada et al Prevention and Control Ministry of Public Health, Thailand EPI_ISL_524361,EPI_ISL _930722,EPI_ISL_130060 Utah Public Health Utah Public Health Laboratory Erin L. Young et al 1,EPI_ISL_1300544,EPI_I Laboratory SL_1403864 Utah Public Health EPI_ISL_746996 Utah Public Health Laboratory Erin Young et al Laboratory EPI_ISL_570461,EPI_ISL _570515,EPI_ISL_570757 ,EPI_ISL_570954,EPI_IS L_1324138,EPI_ISL_1324 141,EPI_ISL_1498061,EP UW Virology Lab UW Virology Lab Pavitra Roychoudhury et al I_ISL_1616618,EPI_ISL_ 1789413,EPI_ISL_208252 4,EPI_ISL_2082694,EPI_I SL_2104866 UZ Leuven, National Reference KU Leuven, Rega Laboratory for Coronaviruses, EPI_ISL_734583 Institute, Clinical and Tony Wawina-Bokalanga et al Laboratory Medicine, Leuven, Epidemiological Virology Belgium EPI_ISL_1168406,EPI_IS VA Connecticut Healthcare Grubaugh Lab - Yale Mary Petrone et al L_1168421 System School of Public Health Pathogen Discovery, Respiratory Viruses EPI_ISL_1373885,EPI_IS Vanderbilt University Medical Branch, Division of Viral L_1373949,EPI_ISL_1373 Jing Zhang et al Center Diseases, Centers for 983 Disease Control and Prevention The Public Health Lisa Esbjornsson Klemendz et EPI_ISL_452236 VC Sorgenfrimottagningen Agency of Sweden al Veer Surendra Sai Institute of EPI_ISL_1662284,EPI_IS Institute of Life Sciences - Medical Sciences and Research, Sunil K. Raghav et al L_1663498 INSACOG Burla, Sambalpur Norwegian Institute of Vestfold Hospital, Toensberg EPI_ISL_1118534 Public Health, Kathrine Stene-Johansen et al Department of Microbiology Department of Virology Veterinary Specialized Veterinary Specialized Institute EPI_ISL_904010 Institute "Kraljevo", Vidanovic et al Kraljevo Serbia Veterinary Specialized Veterinary Specialized Institute EPI_ISL_582532 Institute "Kraljevo", Vidanovic et al "Kraljevo", Serbia Serbia Veterinary Specialized Veterinary Specialized Instute EPI_ISL_833511 Institute "Kraljevo", Vidanovic et al "Nis" Serbia Veterinary Specialized Instute Veterinary Specialized EPI_ISL_833573 Vidanovic et al "Nis" Institute "Sabac", Serbia EPI_ISL_640141,EPI_ISL _1534295,EPI_ISL_21406 Victoria Hospital wc VHW NHLS/UCT Arash Iranzadeh et al 92 Microbiological Diagnostic Unit Public EPI_ISL_426673,EPI_ISL Health Laboratory and Victorian Infectious Diseases _436117,EPI_ISL_456488 Victorian Infectious Caly L. et al Reference Laboratory (VIDRL) ,EPI_ISL_456587 Diseases Reference Laboratory, Doherty Institute Microbiological Diagnostic Unit Public Health Laboratory and EPI_ISL_430709,EPI_ISL Victorian Infectious Diseases Victorian Infectious Caly L. et al _430524 Reference Laboratory (VIDRL) Diseases Reference Laboratory, The Peter Doherty Institute for Infection and Immunity Victorian Infectious Diseases Reference Laboratory and EPI_ISL_416411,EPI_ISL Victorian Infectious Diseases Microbiological Caly L. et al _416410,EPI_ISL_419734 Reference Laboratory (VIDRL) Diagnostic Unit Public Health Laboratory, Doherty Institute EPI_ISL_480650,EPI_ISL _480651,EPI_ISL_480702 ,EPI_ISL_480742,EPI_IS L_521277,EPI_ISL_52188 0,EPI_ISL_522085,EPI_I Victorian Infectious Diseases SL_522098,EPI_ISL_593 VIDRL and MDU-PHL Caly L. et al Reference Laboratory (VIDRL) 411,EPI_ISL_593412,EPI _ISL_640337,EPI_ISL_10 33154,EPI_ISL_1249993, EPI_ISL_1913202,EPI_IS L_1913212 Vilnius university hospital Vilnius university hospital Santaros Klinikos, EPI_ISL_1005421 Santaros Klinikos, Center of Gytis Dudas et al Center of Laboratory Laboratory Medicine Medicine Institute of Vilnius University Hospital EPI_ISL_802860,EPI_ISL Biotechnology, Life Santaros Klinikos, Vilnius Emilija Vasiliunaite et al _904939 Sciences Center, Vilnius University University Institute of Vilnius University Hospital Biotechnology, Life EPI_ISL_560394,EPI_ISL Santaros Klinikos, Vilnius Sciences Center, Vilnius Justinas Slikas et al _560397,EPI_ISL_560395 University University and Thermo Fisher Scientific EPI_ISL_1914236,EPI_IS Department of L_1914238,EPI_ISL_1914 Viollier AG Biosystems Science and Chaoran Chen et al 239 Engineering, ETH Zurich Department of EPI_ISL_1658295 Viollier AG Biosystems Science and Christian Beisel et al Engineering, ETH Zurich EPI_ISL_728931,EPI_ISL _796566,EPI_ISL_100169 0,EPI_ISL_1119544,EPI_I Department of SL_1195176,EPI_ISL_13 Viollier AG Biosystems Science and Chaoran Chen et al 61039,EPI_ISL_1750651, Engineering, ETH Zürich EPI_ISL_1750690,EPI_IS L_2018995,EPI_ISL_2019 338 EPI_ISL_483656,EPI_ISL _486495,EPI_ISL_539469 ,EPI_ISL_560449,EPI_IS Department of L_693898,EPI_ISL_10031 Viollier AG Biosystems Science and Christian Beisel et al 19,EPI_ISL_1259729,EPI Engineering, ETH Zürich _ISL_1259649,EPI_ISL_1 598117,EPI_ISL_2017208 ,EPI_ISL_2017225 Viral Respiratory Infections Cantacuzino Institute EPI_ISL_2017815 Laboratory, Cantacuzino Luiza Ustea et al Virology National Military-Medical Institute

Viral Respiratory Infections Cantacuzino Institute EPI_ISL_2100242 Laboratory, Cantacuzino Sorin Dinu et al Virology National Military-Medical Institute EPI_ISL_437348,EPI_ISL _471400,EPI_ISL_471403 ,EPI_ISL_527527,EPI_IS L_591083,EPI_ISL_59108 4,EPI_ISL_591085,EPI_I Pathogen Sequencing Viral Respiratory Lab, National SL_591086,EPI_ISL_965 Lab, National Institute for Institute for Biomedical Research Placide Mbala-Kingebeni et al 124,EPI_ISL_1623756,EP Biomedical Research (INRB) I_ISL_1623757,EPI_ISL_ (INRB) 1972308,EPI_ISL_197232 3,EPI_ISL_2135841,EPI_I SL_2135846,EPI_ISL_21 35844 EPI_ISL_429972,EPI_ISL _485861,EPI_ISL_572280 Virginia DCLS Virginia DCLS Virginia DCLS et al ,EPI_ISL_614052 EPI_ISL_2090606 VIROLOGY, AFRIMS VIROLOGY, AFRIMS Velasco et al EPI_ISL_1191597,EPI_IS National Institute for Virology Department, Victoria L_1191602,EPI_ISL_1191 Communicable Diseases Hospital, Plaine-Wilhems, Ramuth M et al 603,EPI_ISL_1191604,EP of the National Health Mauritius I_ISL_1827670 Laboratory Service Virology, International Centre for International Centre for EPI_ISL_890237 Diarrhoeal Disease Research, Diarrhoeal Disease Hossain et al Bangladesh (ICDDR,B) Research (ICDDR,B) Virology Lab,Department Virology Lab,Department of of Pathology, National EPI_ISL_493203 Pathology, National Cheng Kung Huey-Pin Tsai et al Cheng Kung University University Hospital Hospital Virology laboratory Ministry of Dasman Diabetes EPI_ISL_416458 Health Kuwait sequenced at Fahd Al-Mulla et al Institute Dasman Diabetes Institute Virology Laboratory, Scientific Virology Laboratory, EPI_ISL_1970570 Department, Army Medical Scientific Department, Silvia Fillo et al Center Army Medical Center EPI_ISL_508863,EPI_ISL _625456,EPI_ISL_677636 ,EPI_ISL_1660225,EPI_I SL_1660234,EPI_ISL_16 60238,EPI_ISL_1660241, Virology Unit, Institut Pasteur de Virology Unit, Institut EPI_ISL_1660282,EPI_IS Christian Ranaivoson et al Madagascar Pasteur de Madagascar L_1660285,EPI_ISL_1660 291,EPI_ISL_1660288,EP I_ISL_1660289,EPI_ISL_ 1660290,EPI_ISL_167239 0 EPI_ISL_1660310,EPI_IS L_1660323,EPI_ISL_1660 Virology Unit, Institut Pasteur de Virology Unit, Institut Marion Barbet et al 324,EPI_ISL_1660328,EP Madagascar Pasteur de Madagascar I_ISL_1660331 EPI_ISL_1711996,EPI_IS Virology Unit, Institut Pasteur du Virology Unit, Institut L_1818965,EPI_ISL_2106 Jurre Y Siegers et al Cambodge Pasteur du Cambodge 254,EPI_ISL_2106276 EPI_ISL_918363,EPI_ISL _918364,EPI_ISL_918367 Virology Unit, Institut Pasteur du Virology Unit, Institut ,EPI_ISL_918369,EPI_IS Sokhoun Yann et al Cambodge Pasteur du Cambodge L_933783,EPI_ISL_93378 5,EPI_ISL_1532809 Virology Unit, Institut Pasteur du Cambodge (Sequencing done by: Jessica E Manning/Jennifer A Bohl Virology Unit, Institut Pasteur du at Malaria and Vector EPI_ISL_411902 Erik A Karlsson et al Cambodge. Research Research Laboratory, National Institute of Allergy and Infectious Diseases and Vida Ahyong from Chan- Zuckerberg Biohub) Pathogen Discovery, Respiratory Viruses VI-US Virgin Islands Department Branch, Division of Viral EPI_ISL_452138 Anna Uehara et al of Health Diseases, Centers for Disease Control and Prevention Pathogen Discovery, Respiratory Viruses VI-US Virgin Islands Department Branch, Division of Viral EPI_ISL_454647 Ying Tao et al of Health Diseases, Centers for Disease Control and Prevention VRDL, Goverment Medical Gujarat Biotechnology EPI_ISL_2017734 Janvi Raval et al College (GMC), Surat Research Centre Genomics and Discovery, Respiratory EPI_ISL_903650,EPI_ISL Viruses Branch, Division VT Dept. of Health Laboratory Krista Queen et al _903694 of Viral Diseases, Centers for Disease Control and Prevention Wadsworth Center, New EPI_ISL_676928,EPI_ISL Wadsworth Center, New York York State Kirsten St. George et al _676721,EPI_ISL_754724 State Department.of Health Department.of Health Institute of EPI_ISL_456168,EPI_ISL Waikato Hospital Environmental Science Matt Storey et al _456259 and Research (ESR) Institute of EPI_ISL_707794 Waikato Hospital Environmental Science Xiaoyun Ren et al and Research (ESR) Washington State Department of EPI_ISL_434069 Seattle Flu Study Chu et al Health Washington State Department of EPI_ISL_417143 Seattle Flu Study Chu etl al et al Health Washington State Department of EPI_ISL_497484 Seattle Flu Study Deborah A. Nickerson et al Health EPI_ISL_456182,EPI_ISL _456187,EPI_ISL_456188 Institute of ,EPI_ISL_456319,EPI_IS Wellington SCL Environmental Science Matt Storey et al L_456332,EPI_ISL_45640 and Research (ESR) 0 Institute of EPI_ISL_1250695 Wellington SCL (WN) Environmental Science Rachel Boyle et al and Research (ESR) Institute of EPI_ISL_637085 Wellington SCL (WN) Environmental Science Xiaoyun Ren et al and Research (ESR) West African Centre for EPI_ISL_1255113,EPI_IS West African Centre for Cell Cell Biology of Infectious L_1255154,EPI_ISL_1255 Biology of Infectious Pathogens Pathogens (WACCBIP), 199,EPI_ISL_1255250,EP Collins M. Morang'a et al (WACCBIP), University of University of Ghana, I_ISL_1255256,EPI_ISL_ Ghana, Accra, Ghana Volta Road, Legon- 1255275 Accra, Ghana West African Centre for West African Centre for Cell Cell Biology of Infectious Biology of Infectious Pathogens Pathogens (WACCBIP), EPI_ISL_1255105 (WACCBIP), University of Collins M. Morang'a et al University of Ghana, Ghana, Volta Road, Legon- Volta Road, Legon- Accra, Ghana Accra, Ghana Wadsworth Center, New WESTCHESTER MEDICAL EPI_ISL_1740514 York State Department Kirsten St. George et al CENTER of Health EPI_ISL_450284,EPI_ISL _524017,EPI_ISL_524048 WHO National Influenza WHO National Influenza Centre ,EPI_ISL_733264,EPI_IS Centre Russian Andrey Komissarov et al Russian Federation L_1789541,EPI_ISL_1789 Federation 542,EPI_ISL_1797437 Wisconsin State EPI_ISL_578688,EPI_ISL Wisconsin State Laboratory of Laboratory of Hygiene _1794346,EPI_ISL_17943 Hygiene Communicable Disease Kelsey R. Florek et al Communicable Disease 52 Division Division National Institute of Health, Department of EPI_ISL_708812 World Medical Hospital Medical Sciences, Pilailuk Okada et al Ministry of Public Health, Thailand 1. Academic Center for Pathomorphological and Genetic-Molecular EPI_ISL_1909094,EPI_IS Diagnostics ltd, L_1909095,EPI_ISL_1909 WSSE Katowice Bialystok, Poland 2. Radosaw Charkiewicz et al 092 National Institute of Public Health - National Institute of Hygiene, Warsaw, Poland National Institute of EPI_ISL_2090620 WSSE w Warszawie Public Health - National Wokowicz Tomasz et al Institute of Hygiene State Key Laboratory of Wuhan Chain Medical Labs EPI_ISL_454986 Biotherapy of Sichuan Baowen Du et al (CMLabs) University Centers for Disease Control and Prevention WVDHHR - Office of Laboratory EPI_ISL_1446719 Division of Viral Mili Sheth et al Services Diseases, Pathogen Discovery Pathogen Discovery, Respiratory Viruses WVDHHR - Office of Laboratory Branch, Division of Viral EPI_ISL_540439 Ying Tao et al Services Diseases, Centers for Disease Control and Prevention EPI_ISL_462959,EPI_ISL Center for Global Health, _614248,EPI_ISL_614254 Wyoming Public Health University of New Mexico Daryl Domman et al ,EPI_ISL_614264,EPI_IS Laboratory Health Sciences Center L_1627062 EPI_ISL_1140085,EPI_IS Wyoming Public Health Wyoming Public Health L_1468663,EPI_ISL_1571 Jim Mildenberger et al Laboratory Laboratory 784,EPI_ISL_1593776 Centers for Disease Control and Prevention EPI_ISL_1272962 WY Public Health Laboratory Division of Viral Krista Queen et al Diseases, Pathogen Discovery Grubaugh Lab - Yale EPI_ISL_1225681 Yale Clinical Virology Lab Joseph Fauver et al School of Public Health Pathogen Genomics Yamagata Prefectural Institute of EPI_ISL_684824 Center, National Institute Tsuyoshi Sekizuka et al Public Health of Infectious Diseases Zhejiang Provincial Center for EPI_ISL_1911195,EPI_IS Zhejiang Province Disease Control and Prevention L_1911250,EPI_ISL_1911 Center of Disease Yanjun Zhang et al Zhoushan Center for Disease 196,EPI_ISL_1911197 Control and prevention Prevention and Contol Gabriela Sevillano Camilo Zurita & Zurita Zurita-Salinas Karen Loaiza EPI_ISL_660070 Zurita & Zurita Laboratorios Laboratorios David Ortega-Paredes Jeannete Zurita et al