Development of a Simple Graphical Interface Based Software for Machine Learning and Data Visualization
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Quick Tour of Machine Learning (機器 )
Quick Tour of Machine Learning (_hx習速遊) Hsuan-Tien Lin (林軒0) [email protected] Department of Computer Science & Information Engineering National Taiwan University (國Ë台c'xÇ訊工程û) Ç料科x愛}者t會û列;動, 2015/12/12 Hsuan-Tien Lin (NTU CSIE) Quick Tour of Machine Learning 0/128 Learning from Data Disclaimer just super-condensed and shuffled version of • • my co-authored textbook “Learning from Data: A Short Course” • my two NTU-Coursera Mandarin-teaching ML Massive Open Online Courses • “Machine Learning Foundations”: www.coursera.org/course/ntumlone • “Machine Learning Techniques”: www.coursera.org/course/ntumltwo —impossible to be complete, with most math details removed live interaction is important • goal: help you begin your journey with ML Hsuan-Tien Lin (NTU CSIE) Quick Tour of Machine Learning 1/128 Learning from Data Roadmap Learning from Data What is Machine Learning Components of Machine Learning Types of Machine Learning Step-by-step Machine Learning Hsuan-Tien Lin (NTU CSIE) Quick Tour of Machine Learning 2/128 Learning from Data What is Machine Learning Learning from Data :: What is Machine Learning Hsuan-Tien Lin (NTU CSIE) Quick Tour of Machine Learning 3/128 learning: machine learning: Learning from Data What is Machine Learning From Learning to Machine Learning learning: acquiring skill with experience accumulated from observations observations learning skill machine learning: acquiring skill with experience accumulated/computed from data data ML skill What is skill? Hsuan-Tien Lin (NTU CSIE) Quick Tour of Machine Learning 4/128 , machine learning: Learning from Data What is Machine Learning A More Concrete Definition skill improve some performance measure (e.g. -
Understanding Support Vector Machines
Chapter 7 Applying the same steps to compare the predicted values to the true values, we now obtain a correlation around 0.80, which is a considerable improvement over the previous result: > model_results2 <- compute(concrete_model2, concrete_test[1:8]) > predicted_strength2 <- model_results2$net.result > cor(predicted_strength2, concrete_test$strength) [,1] [1,] 0.801444583 Interestingly, in the original publication, I-Cheng Yeh reported a mean correlation of 0.885 using a very similar neural network. For some reason, we fell a bit short. In our defense, he is a civil engineering professor; therefore, he may have applied some subject matter expertise to the data preparation. If you'd like more practice with neural networks, you might try applying the principles learned earlier in this chapter to beat his result, perhaps by using different numbers of hidden nodes, applying different activation functions, and so on. The ?neuralnet help page provides more information on the various parameters that can be adjusted. Understanding Support Vector Machines A Support Vector Machine (SVM) can be imagined as a surface that defnes a boundary between various points of data which represent examples plotted in multidimensional space according to their feature values. The goal of an SVM is to create a fat boundary, called a hyperplane, which leads to fairly homogeneous partitions of data on either side. In this way, SVM learning combines aspects of both the instance-based nearest neighbor learning presented in Chapter 3, Lazy Learning – Classifcation Using Nearest Neighbors, and the linear regression modeling described in Chapter 6, Forecasting Numeric Data – Regression Methods. The combination is extremely powerful, allowing SVMs to model highly complex relationships. -
Using a Support Vector Machine to Analyze a DNA Microarray∗
Using a Support Vector Machine to Analyze a DNA Microarray∗ R. Morelli Department of Computer Science, Trinity College Hartford, CT 06106, USA [email protected] January 15, 2008 1 Introduction A DNA microarray is a small silicon chip that is covered with thousands of spots of DNA of known sequence. Biologists use microarrays to study gene expression patterns in a wide range of medical and scientific applications. Analysis of microarrays has led to discovery of genomic patterns that distinguish cancerous from non-cancerous cells. Other researchers have used microarrays to identify the genes in the brains of fish that are associated with certain kinds of mating behavior. Microarray data sets are very large and can only be analyzed with the help of computers. A support vector machine (SVM) is a powerful machine learning technique that is used in a variety of data mining applications, including the analysis of DNA microarrays. 2 Project Overview In this project we will learn how to use an SVM to recognize patterns in microarray data. Using an open source software package named libsvm and downloaded data from a cancer research project, we will to train an SVM to distinguish between gene expression patterns that are associated with two different forms of leukemia. Although this project will focus on SVMs and machine learning techniques, we will cover basic concepts in biology and genetics that underlie DNA analysis. We will gain experience using SVM software and emerge from this project with an improved understanding of how machine learning can be used to recognize important patterns in vast amounts of data. -
Arxiv:1612.07993V1 [Stat.ML] 23 Dec 2016 Until Recently, No Package Providing Multiple Semi-Supervised Learning Meth- Ods Was Available in R
RSSL: Semi-supervised Learning in R Jesse H. Krijthe1,2 1 Pattern Recognition Laboratory, Delft University of Technology 2 Department of Molecular Epidemiology, Leiden University Medical Center [email protected] Abstract. In this paper, we introduce a package for semi-supervised learning research in the R programming language called RSSL. We cover the purpose of the package, the methods it includes and comment on their use and implementation. We then show, using several code examples, how the package can be used to replicate well-known results from the semi-supervised learning literature. Keywords: Semi-supervised Learning, Reproducibility, Pattern Recog- nition, R Introduction Semi-supervised learning is concerned with using unlabeled examples, that is, examples for which we know the values for the input features but not the corre- sponding outcome, to improve the performance of supervised learning methods that only use labeled examples to train a model. An important motivation for investigations into these types of algorithms is that in some applications, gath- ering labels is relatively expensive or time-consuming, compared to the cost of obtaining an unlabeled example. Consider, for instance, building a web-page classifier. Downloading millions of unlabeled web-pages is easy. Reading them to assign a label is time-consuming. Effectively using unlabeled examples to improve supervised classifiers can therefore greatly reduce the cost of building a decently performing prediction model, or make it feasible in cases where labeling many examples is not a viable option. While the R programming language [] offers a rich set of implementations of a plethora of supervised learning methods, brought together by machine learning packages such as caret and mlr there are fewer implementations of methods that can deal with the semi-supervised learning setting. -
Arxiv:1210.6293V1 [Cs.MS] 23 Oct 2012 So the Finally, Accessible
Journal of Machine Learning Research 1 (2012) 1-4 Submitted 9/12; Published x/12 MLPACK: A Scalable C++ Machine Learning Library Ryan R. Curtin [email protected] James R. Cline [email protected] N. P. Slagle [email protected] William B. March [email protected] Parikshit Ram [email protected] Nishant A. Mehta [email protected] Alexander G. Gray [email protected] College of Computing Georgia Institute of Technology Atlanta, GA 30332 Editor: Abstract MLPACK is a state-of-the-art, scalable, multi-platform C++ machine learning library re- leased in late 2011 offering both a simple, consistent API accessible to novice users and high performance and flexibility to expert users by leveraging modern features of C++. ML- PACK provides cutting-edge algorithms whose benchmarks exhibit far better performance than other leading machine learning libraries. MLPACK version 1.0.3, licensed under the LGPL, is available at http://www.mlpack.org. 1. Introduction and Goals Though several machine learning libraries are freely available online, few, if any, offer efficient algorithms to the average user. For instance, the popular Weka toolkit (Hall et al., 2009) emphasizes ease of use but scales poorly; the distributed Apache Mahout library offers scal- ability at a cost of higher overhead (such as clusters and powerful servers often unavailable to the average user). Also, few libraries offer breadth; for instance, libsvm (Chang and Lin, 2011) and the Tilburg Memory-Based Learner (TiMBL) are highly scalable and accessible arXiv:1210.6293v1 [cs.MS] 23 Oct 2012 yet each offer only a single method. -
Sb2b Statistical Machine Learning Hilary Term 2017
SB2b Statistical Machine Learning Hilary Term 2017 Mihaela van der Schaar and Seth Flaxman Guest lecturer: Yee Whye Teh Department of Statistics Oxford Slides and other materials available at: http://www.oxford-man.ox.ac.uk/~mvanderschaar/home_ page/course_ml.html Administrative details Course Structure MMath Part B & MSc in Applied Statistics Lectures: Wednesdays 12:00-13:00, LG.01. Thursdays 16:00-17:00, LG.01. MSc: 4 problem sheets, discussed at the classes: weeks 2,4,6,7 (check website) Part C: 4 problem sheets Class Tutors: Lloyd Elliott, Kevin Sharp, and Hyunjik Kim Please sign up for the classes on the sign up sheet! Administrative details Course Aims 1 Understand statistical fundamentals of machine learning, with a focus on supervised learning (classification and regression) and empirical risk minimisation. 2 Understand difference between generative and discriminative learning frameworks. 3 Learn to identify and use appropriate methods and models for given data and task. 4 Learn to use the relevant R or python packages to analyse data, interpret results, and evaluate methods. Administrative details SyllabusI Part I: Introduction to supervised learning (4 lectures) Empirical risk minimization Bias/variance, Generalization, Overfitting, Cross validation Regularization Logistic regression Neural networks Part II: Classification and regression (3 lectures) Generative vs. Discriminative models K-nearest neighbours, Maximum Likelihood Estimation, Mixture models Naive Bayes, Decision trees, CART Support Vector Machines Random forest, Boostrap Aggregation (Bagging), Ensemble learning Expectation Maximization Administrative details SyllabusII Part III: Theoretical frameworks Statistical learning theory Decision theory Part IV: Further topics Optimisation Hidden Markov Models Backward-forward algorithms Reinforcement learning Overview Statistical Machine Learning What is Machine Learning? http://gureckislab.org Tom Mitchell, 1997 Any computer program that improves its performance at some task through experience. -
Xgboost: a Scalable Tree Boosting System
XGBoost: A Scalable Tree Boosting System Tianqi Chen Carlos Guestrin University of Washington University of Washington [email protected] [email protected] ABSTRACT problems. Besides being used as a stand-alone predictor, it Tree boosting is a highly effective and widely used machine is also incorporated into real-world production pipelines for learning method. In this paper, we describe a scalable end- ad click through rate prediction [15]. Finally, it is the de- to-end tree boosting system called XGBoost, which is used facto choice of ensemble method and is used in challenges widely by data scientists to achieve state-of-the-art results such as the Netflix prize [3]. on many machine learning challenges. We propose a novel In this paper, we describe XGBoost, a scalable machine learning system for tree boosting. The system is available sparsity-aware algorithm for sparse data and weighted quan- 2 tile sketch for approximate tree learning. More importantly, as an open source package . The impact of the system has we provide insights on cache access patterns, data compres- been widely recognized in a number of machine learning and sion and sharding to build a scalable tree boosting system. data mining challenges. Take the challenges hosted by the machine learning competition site Kaggle for example. A- By combining these insights, XGBoost scales beyond billions 3 of examples using far fewer resources than existing systems. mong the 29 challenge winning solutions published at Kag- gle's blog during 2015, 17 solutions used XGBoost. Among these solutions, eight solely used XGBoost to train the mod- Keywords el, while most others combined XGBoost with neural net- Large-scale Machine Learning s in ensembles. -
Computational Tools for Big Data — Python Libraries
Computational Tools for Big Data | Python Libraries Finn Arup˚ Nielsen DTU Compute Technical University of Denmark September 15, 2015 Computational Tools for Big Data | Python libraries Overview Numpy | numerical arrays with fast computation Scipy | computation science functions Scikit-learn (sklearn) | machine learning Pandas | Annotated numpy arrays Cython | write C program in Python Finn Arup˚ Nielsen 1 September 15, 2015 Computational Tools for Big Data | Python libraries Python numerics The problem with Python: >>> [1, 2, 3] * 3 Finn Arup˚ Nielsen 2 September 15, 2015 Computational Tools for Big Data | Python libraries Python numerics The problem with Python: >>> [1, 2, 3] * 3 [1, 2, 3, 1, 2, 3, 1, 2, 3]# Not [3, 6, 9]! Finn Arup˚ Nielsen 3 September 15, 2015 Computational Tools for Big Data | Python libraries Python numerics The problem with Python: >>> [1, 2, 3] * 3 [1, 2, 3, 1, 2, 3, 1, 2, 3]# Not [3, 6, 9]! >>> [1, 2, 3] + 1# Wants [2, 3, 4]... Finn Arup˚ Nielsen 4 September 15, 2015 Computational Tools for Big Data | Python libraries Python numerics The problem with Python: >>> [1, 2, 3] * 3 [1, 2, 3, 1, 2, 3, 1, 2, 3]# Not [3, 6, 9]! >>> [1, 2, 3] + 1# Wants [2, 3, 4]... Traceback(most recent call last): File"<stdin>", line 1, in<module> TypeError: can only concatenate list(not"int") to list Finn Arup˚ Nielsen 5 September 15, 2015 Computational Tools for Big Data | Python libraries Python numerics The problem with Python: >>> [1, 2, 3] * 3 [1, 2, 3, 1, 2, 3, 1, 2, 3]# Not [3, 6, 9]! >>> [1, 2, 3] + 1# Wants [2, 3, 4].. -
LIBSVM: a Library for Support Vector Machines
LIBSVM: A Library for Support Vector Machines Chih-Chung Chang and Chih-Jen Lin Department of Computer Science National Taiwan University, Taipei, Taiwan Email: [email protected] Initial version: 2001 Last updated: January 20, 2021 Abstract LIBSVM is a library for Support Vector Machines (SVMs). We have been actively developing this package since the year 2000. The goal is to help users to easily apply SVM to their applications. LIBSVM has gained wide popu- larity in machine learning and many other areas. In this article, we present all implementation details of LIBSVM. Issues such as solving SVM optimiza- tion problems, theoretical convergence, multi-class classification, probability estimates, and parameter selection are discussed in detail. Keywords: Classification, LIBSVM, optimization, regression, support vector ma- chines, SVM 1 Introduction Support Vector Machines (SVMs) are a popular machine learning method for classifi- cation, regression, and other learning tasks. Since the year 2000, we have been devel- oping the package LIBSVM as a library for support vector machines. The Web address of the package is at http://www.csie.ntu.edu.tw/~cjlin/libsvm. LIBSVM is cur- rently one of the most widely used SVM software. In this article,1 we present all implementation details of LIBSVM. However, this article does not intend to teach the practical use of LIBSVM. For instructions of using LIBSVM, see the README file included in the package, the LIBSVM FAQ,2 and the practical guide by Hsu et al. (2003). An earlier version of this article was published in Chang and Lin (2011). LIBSVM supports the following learning tasks. -
Likelihood Algorithm Afterapplying PCA on LISS 3 Image Using Python Platform
International Journal of Scientific & Engineering Research, Volume 7, Issue 8, August-2016 1624 ISSN 2229-5518 Performance Evaluation of Maximum- Likelihood Algorithm afterApplying PCA on LISS 3 Image using Python Platform MayuriChatse, Vikas Gore, RasikaKalyane, Dr. K. V. Kale Dr. BabasahebAmbedkarMarathwada, University, Aurangabad, Maharashtra, India Abstract—This paper presents a system for multispectral image processing of LISS3 image using python programming language. The system starts with preprocessing technique i.e. by applying PCA on LISS3 image.PCA reduces image dimensionality by processing new, uncorrelated bands consisting of the principal components (PCs) of the given bands. Thus, this method transforms the original data set into a new dataset, which captures essential information.Further classification is done through maximum- likelihood algorithm. It is tested and evaluated on selected area i.e. region of interest. Accuracy is evaluated by confusion matrix and kappa statics.Satellite imagery tool using python shows better result in terms of overall accuracy and kappa coefficient than ENVI tool’s for maximum-likelihood algorithm. Keywords— Kappa Coefficient,Maximum-likelihood, Multispectral image,Overall Accuracy, PCA, Python, Satellite imagery tool —————————— —————————— I. Introduction microns), which provides information with a spatial resolution of 23.5 m not like in IRS-1C/1D (where the spatial resolution is 70.5 m) [12]. Remote sensing has become avitaltosol in wide areas. The classification of multi-spectral images has been a productive application that’s used for classification of land cover maps [1], urban growth [2], forest change [3], monitoring change in ecosystem condition [4], monitoring assessing deforestation and burned forest areas [5], agricultural expansion [6], The Data products are classified as Standard and have a mapping [7], real time fire detection [8], estimating tornado system level accuracy. -
Scikit-Learn
Scikit-Learn i Scikit-Learn About the Tutorial Scikit-learn (Sklearn) is the most useful and robust library for machine learning in Python. It provides a selection of efficient tools for machine learning and statistical modeling including classification, regression, clustering and dimensionality reduction via a consistence interface in Python. This library, which is largely written in Python, is built upon NumPy, SciPy and Matplotlib. Audience This tutorial will be useful for graduates, postgraduates, and research students who either have an interest in this Machine Learning subject or have this subject as a part of their curriculum. The reader can be a beginner or an advanced learner. Prerequisites The reader must have basic knowledge about Machine Learning. He/she should also be aware about Python, NumPy, Scipy, Matplotlib. If you are new to any of these concepts, we recommend you take up tutorials concerning these topics, before you dig further into this tutorial. Copyright & Disclaimer Copyright 2019 by Tutorials Point (I) Pvt. Ltd. All the content and graphics published in this e-book are the property of Tutorials Point (I) Pvt. Ltd. The user of this e-book is prohibited to reuse, retain, copy, distribute or republish any contents or a part of contents of this e-book in any manner without written consent of the publisher. We strive to update the contents of our website and tutorials as timely and as precisely as possible, however, the contents may contain inaccuracies or errors. Tutorials Point (I) Pvt. Ltd. provides no guarantee regarding the accuracy, timeliness or completeness of our website or its contents including this tutorial. -
Liblinear: a Library for Large Linear Classification
Journal of Machine Learning Research 9 (2008) 1871-1874 Submitted 5/08; Published 8/08 LIBLINEAR: A Library for Large Linear Classification Rong-En Fan [email protected] Kai-Wei Chang [email protected] Cho-Jui Hsieh [email protected] Xiang-Rui Wang [email protected] Chih-Jen Lin [email protected] Department of Computer Science National Taiwan University Taipei 106, Taiwan Editor: Soeren Sonnenburg Abstract LIBLINEAR is an open source library for large-scale linear classification. It supports logistic regres- sion and linear support vector machines. We provide easy-to-use command-line tools and library calls for users and developers. Comprehensive documents are available for both beginners and advanced users. Experiments demonstrate that LIBLINEAR is very efficient on large sparse data sets. Keywords: large-scale linear classification, logistic regression, support vector machines, open source, machine learning 1. Introduction Solving large-scale classification problems is crucial in many applications such as text classification. Linear classification has become one of the most promising learning techniques for large sparse data with a huge number of instances and features. We develop LIBLINEAR as an easy-to-use tool to deal with such data. It supports L2-regularized logistic regression (LR), L2-loss and L1-loss linear support vector machines (SVMs) (Boser et al., 1992). It inherits many features of the popular SVM library LIBSVM (Chang and Lin, 2001) such as simple usage, rich documentation, and open source license (the BSD license1). LIBLINEAR is very efficient for training large-scale problems. For example, it takes only several seconds to train a text classification problem from the Reuters Corpus Volume 1 (rcv1) that has more than 600,000 examples.