molecules

Article A Concise Synthesis of a BODIPY-Labeled Tetrasaccharide Related to the Antitumor PI-88

Juan Ventura 1 , Clara Uriel 1 , Ana M. Gomez 1,* , Edurne Avellanal-Zaballa 2, Jorge Bañuelos 2,* , Inmaculada García-Moreno 3 and Jose Cristobal Lopez 1,*

1 Instituto de Química Orgánica General, IQOG-CSIC, Juan de la Cierva 3, 28006 Madrid, Spain; [email protected] (J.V.); [email protected] (C.U.) 2 Departamento de Química Física, Universidad del Pais Vasco-EHU, Apartado 644, 48080 Bilbao, Spain; [email protected] 3 Instituto de Química-Física “Rocasolano”, IQFR-CSIC, Serrano 119, 28006 Madrid, Spain; [email protected] * Correspondence: [email protected] (A.M.G.); [email protected] (J.B.); [email protected] (J.C.L.)

Abstract: A convergent synthetic route to a tetrasaccharide related to PI-88, which allows the incorporation of a fluorescent BODIPY-label at the reducing-end, has been developed. The strategy, which features the use of 1,2-methyl orthoesters (MeOEs) as glycosyl donors, illustrates the usefulness of suitably-designed BODIPY dyes as glycosyl labels in synthetic strategies towards fluorescently- tagged .

Keywords: PI-88; glycosylation; 1,2-methyl orthoesters; BODIPY; fluorescent labeling

 

Citation: Ventura, J.; Uriel, C.; 1. Introduction Gomez, A.M.; Avellanal-Zaballa, E.; Bañuelos, J.; García-Moreno, I.; The recognition of the crucial role of heparanase enzyme, an endo-β-D-glucuronidase Lopez, J.C. A Concise Synthesis of a able to degrade heparan sulfate (HS) in the extracellular matrix and basement membranes, BODIPY-Labeled Tetrasaccharide in a number of pathological processes, such as metastasis and angiogenesis, has triggered Related to the Antitumor PI-88. the development of heparanase inhibitors [1–6]. Among these inhibitors PI-88, a mixture of Molecules 2021, 26, 2909. https:// functionalized oligosaccharides, i.e., 1, 2, (Figure1), that potently inhibited hep- doi.org/10.3390/molecules26102909 aranase and in vitro angiogenesis, has been considered as a promising candidate and has received considerable attention [7]. On the other hand, fluorescent labeling of biomolecules Academic Editor: Ugo Caruso has been recognized as a research topic of great significance, since such labeling facili- tates the investigation of glycoconjugates and their interaction in biological systems at Received: 14 April 2021 high sensitivity [8–12]. Among the types of fluorescent dyes commonly employed as Accepted: 12 May 2021 tags, borondipyrromethene (BODIPY, 4, 4-difluoro-4-bora-3a, 4a-diaza-s-indacene) dyes, Published: 14 May 2021 e.g., 3 (Figure1) have excelled. Several reasons can be cited for this preference: their high fluorescent quantum yields (∅), excellent photochemical and chemical stabilities, and, ar- Publisher’s Note: MDPI stays neutral guably, the relatively facile modulation of their photophysical and/or chemical properties with regard to jurisdictional claims in by means of synthetic postfunctionalization of their indacene core [13–18]. published maps and institutional affil- Based on these precedents, we thought it would be of interest to investigate the feasi- iations. bility of a synthetic approach to BODIPY-labeled PI-88 saccharide components, where the fluorescent dye is incorporated from the beginning of the synthetic sequence. Additionally, we envisioned that the incorporation of the lipophilic BODIPY moiety at the reducing end of a PI-88 saccharide analogue would bring one additional advantage by facilitating the vi- Copyright: © 2021 by the authors. sualization and detection of the synthetic intermediates along the saccharide synthesis [19]. Licensee MDPI, Basel, Switzerland. Additionally, in light of some reported literature precedents [20], the incorporation of the This article is an open access article lipophilic BODIPY core to the saccharidic ensemble could lead to ameliorated biological distributed under the terms and activity in the ensuing saccharides. Thus, in this Article, we report a synthetic approach conditions of the Creative Commons to a PI-88 tetrasaccharide analogue [21] featuring the use of 1,2-methyl orthoester (MeOE) Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ glycosyl donors, i.e., 4 (Figure1), in which a BODIPY-type fluorescent probe could be 4.0/). attached at the reducing end of the saccharides from the beginning of the synthesis.

Molecules 2021, 26, 2909. https://doi.org/10.3390/molecules26102909 https://www.mdpi.com/journal/molecules Molecules 2021, 26, x FOR PEER REVIEW 2 of 13

Molecules 2021, 26, x FOR PEER REVIEW 2 of 13

methyl orthoester (MeOE) glycosyl donors, i.e., 4 (Figure 1), in which a BODIPY-type flu- methyl orthoesterorescent (MeOE) probe glycosyl could be donors, attached i.e., at 4 (Figurethe redu 1),cing in whichend of a the BODIPY-type saccharides flu- from the begin- Molecules 2021, 26, 2909orescent probening could of the be synthesis.attached at the reducing end of the saccharides from the begin- 2 of 12 ning of the synthesis. Ph Na O PO Na O PO OMe 2 3 2 3 1 O OR OR Ph R O 2 O Na2O3PO Na2O3PO O OR 8 ROMeO O RO OR RO α-1,3 1 1 7 O 2 OR RO OR RO OR R O R O 2 O O RO OO OR RO O 8 2 R O 6 O RO OR RO O α-1,3O 1 n 7 N 2 N 4 RO α-1,3RO n OR OR R O 3 B 5 RO O RO O 2 OR 6 a R1 = R2 = Bz; O OO α-1,2 n N N F F 4 α n RO OR O b 1 2 -1,3 O ROO B R = OTBDPS, R = Bz; RO OR 3 5 a 31 2 1 2 O α-1,2 F F R = R = Bz; c R = R = Bn RO RO O OR b 1 2 O 1 ROORO 2 R = OTBDPS, R = Bz; RO 3 c R1 = R2 = BnBn = benzyl; Bz = benzoyl; RO R = NaO S; n = 1 - 3 OR 1 3 R = NaO3S; n = 0 - 2 TBDPS = tert-butyldiphenyl silyl OR 2 Bn = benzyl; Bz = benzoyl; R = NaO S; n = 1 - 3 n - TBDPS = tert-butyldiphenyl silyl 3 Figure 1. PI-88 (1R, 2=), NaO BODIPY3S; = 0(3 ), 2 IUPAC numbering) and 1,2-methyl orthoester glycosyl donors (4) used in this study. Figure 1. PI-88Figure (1,2 1.), BODIPYPI-88 (1,2 (),3 ),BODIPY IUPAC numbering)(3), IUPAC numbering) and 1,2-methyl and orthoester1,2-methyl glycosyl orthoester donors glycosyl (4) used donors in this study. (4) used in this study. 2. Results. Results 2. Results. Several synthetic approaches to analogues of tetra- and pentasaccharides 11 have al- Several syntheticready beenbeen approaches reportedreported [ 22 [22–28].to– 28analogues]. In In those those of approaches, tetra- approa andches, pentasaccharides different different types types glycosyl 1 glycosyl have donors al- donors have have been ready been reportedbeenemployed. employed. [22–28]. We have WeIn those beenhave interestedapproabeen interestedches, in different the usein the of types 1,2-methyluse ofglycosyl 1,2-methyl orthoesters donors orthoesters have(MeOEs) (MeOEs) [29–33] been employed.[29–33]as anWe inexpensive ashave an inexpensivebeen interested alternative alternative in to the Fraser–Reid’s use to Fraser–Reid’s of 1,2-methyln-pentenyl n orthoesters-pentenyl orthoester orthoester (MeOEs) glycosyl glycosyl donors do- [29–33] as an(NPOEs)nors inexpensive (NPOEs) [34 –alternative 36[34–36].]. The The former to formerFraser–Reid’s derivatives derivative n-pentenyl weres were shown shown orthoester to displayto display glycosyl good good do- regioselectivity, regioselectiv- nors (NPOEs)ity,similar [34–36]. similar to The that to thatformer of NPOEs of NPOEs derivative [31]. [31]. Accordingly,s Accordingly,were shown our to our convergent display convergent good 1 + 11regioselectiv- ++ 1 2 + approach 2 approach toBODIPY- to BOD- ity, similar toIPY-taggedtagged that of NPOEs tetramannan, tetramannan, [31]. Accordingly,10 (Scheme 10 (Scheme 1our) was 1) convergent was based based on 1on our + 1our + previous 2 pr approachevious studies studies to BOD- on on the the selective selective IPY-tagged tetramannan,mono-glycosylation 10 (Scheme at position 1) was based O-3 in on mannopyranose our previous studies substrates on the possessing selective a 2,3,4 trioltriol mono-glycosylationmoiety, at i.e., position 6,, 7 (Scheme(Scheme O-3 in 1 mannopyranose1),), with with MeOE MeOE glycosyl glycosylsubstrates donors, donors, possessing 4a4a,, 4b4b a,, 2,3,4 andand 9triol9 [[31].31 ]. Thus,Thus, ourour moiety, i.e., 6strategy, 7 (Scheme involved 1), with two MeOE glycosidic glycosyl disconnections donors, 4a, A4b and, and B 9(Scheme(Scheme [31]. Thus,1 1).). Disconnection Disconnectionour A strategy involved(Scheme two1 1),) glycosidic, leading to disconnections BODIPY- A and B 6 ,(Scheme was envisioned 1). Disconnection by glycosylation A of of a a ben- ben- (Scheme 1), leadingzylated to mannopyranoside mannopyranoside BODIPY-disaccharide 55, exposing, exposing 6, was only envisioned only one one hydroxyl hydroxylby glycosylation group group (O-2) (ofO for-2) a ben- the for glycosyl the glycosyl cou- zylated mannopyranosidepling,coupling, with with MeOE 5, exposing MeOE donor donor 4aonly. On one4a the. hydroxyl On other the hand, other group disconnection hand, (O-2) disconnection for the B glycosyl (SchemeB cou- 1)(Scheme was imagined1) was pling, with MeOEbyimagined regioselective donor by 4a regioselective. On mono-glycosylation the other mono-glycosylationhand, disconnection of triol 6, at B of position(Scheme triol 6, at O1)-3’, positionwas according imaginedO-3’, to according precedents to 9 by regioselectivefromprecedents mono-glycosylation our research from our group research [31],of triol groupby 6a, disaccharideat [ 31position], by a disaccharideO MeOE-3’, according donor, MeOE 9to. precedents donor, . from our research group [31], by a disaccharide MeOE donor, 9. TBDPSO OBz TBDPSO TBDPSO BzO O OBz OBz BzO TBDPSO TBDPSO BzO O OH BzO O OBz O TBDPSO O BzO O HO BzO OH O A O B 3 HO O O 10 BnO O A B 3 BnO O O BnO 10 BnO O TBDPSO OBz BnO 9 + 6 BODIPY TBDPSO Ph BnO BzO O O OMe TBDPSO OBz BzO 9 + 6 BODIPY TBDPSO Ph O O OMeBzO O BzO O O TBDPSO OH BzO O 9 4’ BzO O 1,2-M ethyl o rth o e s te r O O TBDPSO HO fo rm a tion OH HO A 9 4b 4’ 3’ 2’ 1,2-M ethyl o rth o e s te r from com pound 8 HO O O A BnO fo rm a tion HO 2’ O 4b TBDPSO OH 3’ BnO from com pound 8 OTBDPS O BnO 4’ O BnO 2 HO OH O TBDPSO OH BnO 6 OTBDPSHO O BODIPY 4’ 3’ 2’ HO BnO 2 HO O OH O 3 6 HO O 8 BODIPY 3’ 2’ HO SPh 4a O 8 3 4b SPh OTBDPS 4a BnO HO Protecting group abbreviations: OH 4b 4 BnO O Bn = benzyl; O HO OTBDPS HO BnO BnO 2 Protecting group abbreviBz =ati benzoyl;ons: OH HO 4 3 2 BnO O Bn = benzyl; TBDPS = tert-butyldiphenyl silylO BODIPY HO 7 SPh BnO 2 5 Bz = benzoyl; HO TBDPS = tert-butyldiphenyl silyl 3 2 SPh BODIPY Scheme 1. Retrosynthesis7 of PI-88 tetrasaccharide analogue5 10, involving thethe solesole useuse ofof 1,2-methyl1,2-me- Scheme 1. Retrosynthesisthylorthoester orthoester glycosyl of PI-88 glycosyl donors,tetrasaccharide donors,4 and 4 9and. analogue 9. 10, involving the sole use of 1,2-me- thyl orthoester glycosyl donors, 4 and 9. The synthetic route started with the glycosylation of BODIPY 11 [37], readily available through a one-pot transformation using phthalide and pyrrole as the starting materials,

followed by in situ coordination with BF3.OEt2 [38], with methyl orthoester 4c, to yield BODIPY glycoside 12 (80% yield, Scheme2a). However, attempted saponification of the Molecules 2021, 26, x FOR PEER REVIEW 3 of 13

The synthetic route started with the glycosylation of BODIPY 11 [37], readily availa- ble through a one-pot transformation using phthalide and pyrrole as the starting materi- Molecules 2021, 26, 2909 als, followed by in situ coordination with BF3.OEt2 [38], with methyl orthoester 4c, to 3yield of 12 BODIPY glycoside 12 (80% yield, Scheme 2a). However, attempted saponification of the 2-O-Bz substituent in 12, by treatment with Et3N or NaOMe in methanol, resulted in the 2-productionO-Bz substituent of the undesired in 12, by treatmentB(OMe)2-BODIPY with Et3 Nderivatives or NaOMe 13 in and methanol, 14, where resulted the fluorine in the productionatoms were ofreplaced the undesired by methoxy B(OMe) groups2-BODIPY (Scheme derivatives 2a). These13 andderivati14, whereves, although the fluorine also atomsfluorescent were [39], replaced proved by to methoxy be labile groups under (Scheme the acidic2a). conditions These derivatives, required in although the next also gly- fluorescentcosylation events. [39], proved We then to be turned labile under our attention the acidic to conditions borondiphenyl required BODIPY in the next 15, glycosy-a more lationchemically events. robust We then yet turnedfluorescent our attention BODIPY to analogue borondiphenyl [40]. Access BODIPY to15 15, awas more also chemically affected robustby slightly yet fluorescentmodifying our BODIPY one-pot analogue procedure [40]. [38], Access from to phthalide15 was also and affected pyrrole, by by slightly simply modifying our one-pot procedure [38], from phthalide and pyrrole, by simply replacing replacing BF3.OEt2 by B(Ph)3 in the borondipyrromethene ring closing reaction (Scheme BF2b)3 .OEt[41].2 by B(Ph)3 in the borondipyrromethene ring closing reaction (Scheme2b) [41].

Scheme 2. (a) Glycosylation of BODIPY 11 with MeOE 4c and saponification saponification attempts; attempts; ( (bb)) one-pot one-pot synthesis ofof 4,4-diphenyl4,4-diphenyl BODIPYBODIPY 1515..

The syntheticsynthetic routesroutes to to the the two two fragments fragments in in the the convergent convergent approach approach to PI-88to PI-88 tetrasac- tetra- charidesaccharide analogue analogue10, glycosyl10, glycosyl acceptor acceptor6 and 6 and glycosyl glycosyl donor donor9, are 9, depicted are depicted in Scheme in Scheme3a,b. Thus,3a,b. Thus, glycosylation glycosylation of hydroxymethyl of hydroxymethyl BODIPY BODIPY15 with 15 benzylated with benzylated MeOE 4c MeOE, followed 4c, fol- by saponificationlowed by saponification (NaOMe/MeOH), (NaOMe/MeO led to BODIPY-mannopyranosideH), led to BODIPY-mannopyranoside5 (Scheme3a). 5 (Scheme The lat- ter3a). was The then latter glycosylated was then glycosylated with tri-O-benzoyl with tri- MeOEO-benzoyl4a, to MeOE yield BODIPY 4a, to yield disaccharide BODIPY 16adisac-in moderatecharide 16a yield in moderate (52%). Next, yield protecting (52%). Next, group protec manipulationsting group manipula in compoundtions16a in ,compound including de-16aO, including-benzoylation de-O leading-benzoylation to tetraol leading16b, and to tetraol selective 16b monosilylation, and selective atmonosilylation the primary hy- at droxylthe primary group hydroxyl at O-6’ in group the latter at O-6’ [terbutyldiphenylsilyl in the latter [terbutyldiphenylsilyl chloride, 4-dimethylaminopyridine chloride, 4-dime- (DMAP),thylaminopyridine in dimethyl (DMAP), formamide in dimethyl (DMF)] produced formamide 2’,3’,4’-triol (DMF)] 6produced, (Scheme 32’,3’,4’-triola). 6, (SchemeOn the3a). other hand, the route to MeOE-disaccharide donor 9 started from phenyl thiomannopyranosideOn the other hand,7 the(Scheme route3 tob). MeOE-disaccharide Accordingly, regioselective donor 9 started mono-glycosylation from phenyl thi- at Oomannopyranoside-3 of 2,3,4-triol 7 with 7 (Scheme MeOE 3b).4b, basedAccordingly, on precedents regioselective from our mono-glycosylation research group [31 at,42 O],- yielded3 of 2,3,4-triol phenyl 7 1-thiomannopyranoside with MeOE 4b, based 8onin precedents good yield (Schemefrom our3b). research To conclude, group a[31,42], three- stepyielded sequence phenyl from 1-thiomannopyranoside8, including perbenzoylation, 8 in good yield anomeric (Scheme bromination, 3b). To conclude, and orthoester a three- formationstep sequence from from an intermediate 8, including glycosylperbenzoylation, bromide accordinganomeric tobromination, Wei et al. [43 and], allowed orthoester its conversionformation from to MeOE an intermediate disaccharide glycosyl donor 9 brom(Schemeide according3b). to Wei et al. [43], allowed its conversionFinally, to glycosyl MeOE disaccharide acceptor 6, containing donor 9 (Scheme a mannopyranoside 3b). triol unit, was regioselec- tively mono-glycosylated at O-3’with MeOE disaccharide 9 [44], to yield PI-88 tetrasac- charide precursor analogue 10, in 53% yield (Scheme4). An alternative glycosylation of 6 with a MeOE , e.g., 4a or 4b, rather than with a disaccharide, i.e., 9, in our hands consistently led to low yields of the analogue. Molecules 2021, 26, x FOR PEER REVIEW 4 of 13

Molecules 2021, 26Molecules, x FOR PEER2021, 26REVIEW, 2909 4 of 13 4 of 12

Scheme 3. (a) Synthesis of BODIPY disaccharide acceptor 6; (b) access to MeOE-disaccharide donor 9, from thioglycoside 7, by regioselective glycosylation with MeOE 4b and subsequent orthoester formation on the ensuing disaccharidic thioglycoside intermediate 8.

Finally, glycosyl acceptor 6, containing a mannopyranoside triol unit, was regiose- Scheme 3. (alectively)Scheme Synthesis 3.mono-glycosylated of(a) BODIPY Synthesis disaccharide of BODIPY at O acceptor-3’withdisaccharide 6MeOE;(b) acceptor access disaccharide to 6 MeOE-disaccharide; (b) access 9 [44], to MeOE-disaccharide to yield donor PI-889, from tetrasac- thioglycosidedonor 7, by regioselectivecharide9, from glycosylation thioglycosideprecursor with analogue 7 MeOE, by regioselective4b 10and, in subsequent53% yieldglycosylation (Scheme orthoester with 4). formation MeOEAn alternative 4b on and the ensuingsubsequent glycosylation disaccharidic orthoester of 6 thioglyco- side intermediatewithformation 8a. MeOE on the monosaccharide, ensuing disacchar e.g.,idic 4a thioglycoside or 4b, rather intermediate than with 8a. disaccharide, i.e., 9, in our hands consistently led to low yields of the trisaccharide analogue. Finally, glycosyl acceptor 6, containing a mannopyranoside triol unit, was regiose- TBDPSO OBz lectively mono-glycosylated at O-3’with MeOE disaccharideTBDPSO 9 [44], to yield PI-88 tetrasac- BzO O OBz charide precursor analogue 10, in 53% yield (Scheme 4). An alternativeTBDPSO glycosylation of 6 TBDPSO BzO O BzO 4’ OH with a MeOEOH monosaccharide, e.g., 4a or 4b, ratherO than with a disaccharide, i.e., 9, in our 4’ HO O HOhands consistentlyO led to low yielOTBDPSds of the trisaccharide analogue.O OBz Ph 3’ 2’ HO TBDPSO OMe 3’ 2’ O BnO O O BzO TBDPSOO OBz BnO BzO TBDPSO BnO O O O BnO BnO O BzO BzO O OBz O TBDPSO TBDPSOBnO BzO O O 9 BzO 4’ OH OH O O O 4’ BF .OEt HO HO O OTBDPS3 2 O OBz Ph 3’ 2’ HO N N - 30 oC, CHTBDPSOCl OMe N N 3’ 2’ O 2 2 BnO O 6O B BzO O 10 B BnO BzO 53% BnO O Ph Ph O O Ph Ph BnO O BzO BnO BnO O SchemeScheme 4. Regioselective 4. Regioselective glycosylation glycosylation of triol of9 triol6 with 6 with MeOE-disaccharide MeOE-disaccharide9 leading 9 leading to tetrasaccharide toO tetrasaccha-10. ride 10. O BF3.OEt2 To impel the advanced applications of the new glycoprobes, we analyzed the photonic N N - 30 oC, CH Cl N N To impel6 behavior the advancedB of BODIPY applications15 and2 itsof2 saccharidethe new glycoprobes, derivatives 16a weand analyzed1010, under theB lowpho- (photophysical 53% tonic behaviorproperties) of BODIPYPh Ph and 15 highand its (laser saccharide properties) derivatives irradiation 16a regimes. and 10, Theunder replacement lowPh Ph(pho- of the fluorine tophysicalScheme 4. Regioselectiveproperties)atoms at and the glycosylation boronhigh (laser bridge, of proper triol as in6 withties)11 [ 38 MeOE-disaccharideirradiation], by phenyl regimes. groups, 9 leading The as inreplacement to15 tetrasaccha-[45], had of low impact on theride fluorine 10. atomsthe spectral at the boron properties bridge, of BODIPYas in 11 [38], (Figure by 2phenyl) but induced groups, both as in a 15 decrease [45], had of the emission low impact onefficiency the spectral(Table properties1) and a of biexponential BODIPY (Figure character 2) but of induced the fluorescent both a decrease lifetime (Table S1), re- of theTo emission impelgardless theefficiency advanced of the (Table environmentalapplications 1) and a biof properties.exponential the new glycoprobes, The character free motion of we the analyzed of fluorescent these phenyl the life-pho- rings chelating timetonic (Table behavior S1),the ofregardless boron BODIPY atom of 15 reducedthe and environmen its thesaccharide planaritytal properties. derivatives of the dipyrrin The 16a free and core motion 10 (computed, under of these low bending (pho-phe- angles in the nyltophysical rings chelating properties)dipyrrin the coreboronand high up atom to (laser 16 reduced◦ in proper the excitedthties)e planarity irradiation state, of Figure the regimes. dipyrrin2), increasing The core replacement (computed the internal of conversion bendingthe fluorine angles atomsprocesses in the at dipyrrinthe with boron a deleterious core bridge, up to as effect16° in in11 onthe [38], the excited fluorescenceby phenyl state, groups,Figure signal. 2), as The increasingin labelling15 [45], thehad of a disaccharide internallow impact conversion onor the tetrasaccharide spectralprocesses properties with with a BODIPYdeleterious of BODIPY15 ,effect as (Figure in compoundon the 2) butfluorescence induced16a and 10both signal., respectively, a decrease The la- widened the bellingof the emissionof a disaccharideabsorption efficiency spectrum,or (Tabletetrasaccharide 1) while and thea biwith spectralexponential BODIPY profile character15 of, as fluorescence in compound of the fluorescent matched 16a and that life-10 of, its precursor respectively,time (Table S1), widened(Figure regardless2). the It isabsorption of noteworthy the environmen spectrum, that BODIPYstal while properties. 10theand spectral The16a freedisplayed profile motion of a fluorescenceof brighter these phe- fluorescence with nyl rings chelatinglonger the lifetimes boron thanatom their reduced non-glycosylated the planarity counterpart of the dipyrrin15 in core all tested(computed media and regard- bending anglesless in of the the dipyrrin number core of saccharide up to 16° unitsin the appended excited state, (Table Figure1 and 2), Table increasing S1). Thus, the glycosylation internal conversionof the ortho processes-hydroxymethyl with a deleterious group of effect the C-8-aryl on the fluorescence residue led to signal. a more The rigid la- and compact belling of a disaccharidemolecular structure, or tetrasaccharide e.g., 16a and with10 BODIPY, owing to 15 the, as higher in compound steric hindrance 16a and 10 imposed, by the respectively, widened the absorption spectrum, while the spectral profile of fluorescence

Molecules 2021, 26, x FOR PEER REVIEW 5 of 13

matched that of its precursor (Figure 2). It is noteworthy that BODIPYs 10 and 16a dis- played a brighter fluorescence with longer lifetimes than their non-glycosylated counter- Molecules 2021, 26,part 2909 15 in all tested media and regardless of the number of saccharide units appended 5 of 12 (Tables 1 and S1). Thus, glycosylation of the ortho-hydroxymethyl group of the C-8-aryl residue led to a more rigid and compact molecular structure, e.g., 16a and 10, owing to the higher stericbulky hindrance disaccharide. imposed In by fact, the thebulky structural disaccharide. arrangement In fact, ofthe the structural C-8-benzyl ar- residue in 16a rangement of thewas C-8-benzyl nearly orthogonal residue in (twisting 16a was dihedral nearly orthogonal angle computed (twisting in the dihedral ground an- state of 75◦ in 15 gle computed invs. the 85 ground◦ in 16a ),state reducing of 75° in the 15 internal vs. 85° in conversion 16a), reducing pathways the internal associated conver- to conformational sion pathways associatedfreedom. Consequently, to conformational BODIPY-saccharides freedom. Consequently16a and,10 BODIPY-saccharidesbehaved as efficient and stable flu- 16a and 10 behavedorescent as efficient glycoprobes and evenstable under fluorescent laser irradiation glycoprobes conditions, even under exhibiting laser irra- a lasing efficiency diation conditions,up to exhibiting 38% in the a greenlasing spectralefficiency region up to (540 38% nm, in the Table green1) with spectral high region photostability, since (540 nm, Table 1)their with laser high emission photostability, remained since at thetheir initial laser level emission even remained after 70,000 at pumpthe initial pulses. This good level even aftertolerance 70,000 pump to intense pulses. and This prolonged good tolerance irradiation to intense is a highly and desirableprolonged property irradi- for fluorescent ation is a highlylabels desirable to provide property long-lasting for fluorescent bioimages. labels Therefore, to provide from long-lasting a photonic pointbi- of view, the oimages. Therefore,ortho- from position a photonic of 8-phenyl point BODIPYs of view, the is highlighted ortho- position as a of suitable 8-phenyl grafting BOD- position to tag IPYs is highlighted(oligo)saccharides, as a suitable grafting even resulting position into tag an amelioration(oligo)saccharides, of the even photonic resulting performance of the in an ameliorationoriginal of the labeling photonic dye. performance of the original labeling dye.

Figure 2. AbsorptionFigure 2. Absorption (in blue) and (in normalized blue) and normalized fluorescence fl (inuorescence red) spectra (in red) of BODIPY spectra15 of andBODIPY its glycosylated 15 and its derivative 16a in dilutedglycosylated solution of derivative ethyl acetate. 16a in The diluted spectral solution profiles of of ethyl10 fully acetate. resemble The spectral those of profiles16a. The of excited 10 fully state re- optimized geometry ofsemble15 in twothose different of 16a. viewsThe excited is also state enclosed optimized with key geometry dihedral of angles 15 in totwo show different the bending views is of also the chromophore.en- closed with key dihedral angles to show the bending of the chromophore. Table 1. Photophysical 1 and laser 2 properties of BODIPY 15, and glycosylated derivatives 16a and 10, Table 1. Photophysicalin ethyl 1 acetate.and laser For 2 properties the sake of of comparison, BODIPY 15 the, and corresponding glycosylated photophysicalderivatives 16a data and of the F-BODIPY 10, in ethyl acetate.counterpart For the (insake ethanol) of comparison have been, the added. corresponding For additional photophysical photophysical data data, ofsee the Table F- S1. BODIPY counterpart (in ethanol) have been added. For additional photophysical data, see Table S1. Compound λab (nm) εmax λfl (nm) ∅ <τ> (ns) λla (nm) Eff (%) Compound λab (nm) εmax λfl (nm) ∅ <τ> (ns) λla (nm) Eff (%) 11 499.5 6.4 513.0 0.74 6.45 540 60 11 499.515 6.4497.0 513.0 4.8 0.74 511.5 6.45 0.22 540 2.83 60 533 18 15 497.016a 4.8500.0 511.5 4.5 0.22 516.0 2.83 0.31 533 3.19 18 545 38 16a 500.010 4.5500.5 516.0 4.1 0.31 515.0 3.19 0.31 545 3.57 38 547 36 1 10 Registered500.5 under4.1 a soft irradiation 515.0 regime;0.31 dye concentration:3.57 2 µM. 547 Absorption (36λab ) and fluorescence (λfl) ε 4 −1 −1 1 Registered underwavelength, a soft irradiat molarion absorption regime; (dyemax concentration:) (10 M cm ),2 fluorescenceμM. Absorption quantum (λab yield) and (∅fluores-), and amplitude-average lifetime (<τ>). 2 Recorded under a hard irradiation regime; dye concentration 2 mM. Peak wavelength for the cence (λfl) wavelength, molar absorption (εmax) (104 M−1 cm−1), fluorescence quantum yield (∅), and laser emission (λ ) and efficiency (Eff (%)) defined as the ratio between the energy of the laser output and the la 2 amplitude-averagepump lifetime energy (< incidentτ>). Recorded on the cell under surface. a hard irradiation regime; dye concentration 2 mM. Peak wavelength for the laser emission (λla) and efficiency (Eff (%)) defined as the ratio be- tween the energy3. of Conclusions the laser output and the pump energy incident on the cell surface.

In summary, we developed a convergent, efficient, synthetic strategy to BODIPY- labeled PI-88 tetrasaccharide components (10)[46], which serves to illustrate the scope and usefulness of MeOEs as glycosyl donors. The inclusion of the BODIPY-tag from the beginning of the synthesis facilitates the visual recognition (thin-layer chromatography, TLC) of the labeled-saccharide acceptor and the glycosylated products therefrom, among the rest of the non-fluorescent side-products arising from side-reactions of the MeOE glycosyl donor [36]. This feature becomes particularly appealing when excess amounts of glycosyl donors are required to lead the glycosylation to completion. On the other hand, the chemically stable 4, 4’-diphenyl BODIPY derivative (15), used as a tag, displayed good Molecules 2021, 26, 2909 6 of 12

fluorescent properties and photostability under strong and prolonged irradiation, and was also able to withstand all reaction conditions employed in the synthetic sequence leading to 10 [20]. Our results also indicate that the incorporation of subunits at the ortho-hydroxymethyl group of the C-8-aryl substituent has a beneficial effect on the, already, good photophysical features of the BODIPY dye.

4. Materials and Methods 4.1. General Information The solvents and reagents used in the transformations included in the manuscript were obtained from commercial sources. In the glycosylation experiments, the adventitious water content was removed by repeated evaporation of the sample with toluene. The temperature at which the reactions were carried out will be mentioned unless room temperature was used. The glycosylation reactions were carried out in dried flasks fitted with rubber septa under an argon atmosphere. A 5.0 M stock solution of triethyloxonium tetrafluoroborate, employed in the prepara- tion of the BODIPYs, was prepared by dissolving 25 g (0.131 mmol) of the salt in 26.3 mL of anhydrous methylene chloride. Anhydrous MgSO4 was used to dry organic solutions during workup. Evaporation of the solvents was performed using a rotary evaporator (Buchi, Flawil, Switzerland). Flash col- umn chromatography was used to purify or separate the samples. Thin-layer chromatogra- phy (TLC) was conducted on Kieselgel 60 F254. Spots corresponding to BODIPY-containing molecules were spotted under visible light. TLCs were then inspected under UV irradiation (254 nm) followed by charring with a solution of 20% aqueous H2SO4 (200 mL) in AcOH 1 13 (800 mL). H and C-NMR spectra were recorded in CDCl3 at 300, 400, or 500 MHz and 75, 101, or 126 MHz, respectively. Chemical shifts are expressed in parts per million (δ scale) downfield from tetramethylsilane and are referenced to residual protium in the NMR sol- vent (CHCl3: δ 7.25 ppm, CD3OD: δ 4.870 ppm). Coupling constants (J) are given in Hz. All presented 13C-NMR spectra are proton decoupled. Mass spectra were recorded by direct injection with an Accurate Mass Q-TOF LC/MS spectrometer (Agilent Technologies, Santa Clara, CA, USA) equipped with an electrospray ion source in positive mode.

4.2. General Procedures 4.2.1. General Procedure for Glycosylation. Procedure A A previously dried mixture of a glycosyl donor and glycosyl acceptor was dissolved in anhydrous dichloromethane (≈3 mL/0.1 mmol). Previously dried (200 ◦C, one night) 4Å molecular sieves were added to the mixture. The reaction was cooled to −30 ◦C, and then BF3.OEt2 (3.0 equiv) was added. After 5–10 min, the reaction mixture was diluted with dichloromethane and the ensuing solution washed with saturated aqueous NaHCO3 solution. The organic layer was dried over Na2SO4, filtered, and evaporated under vacuum. The resulting crude mixture was purified by chromatography on silica gel (eluent: hexane- ethyl acetate mixtures).

4.2.2. General Procedure for Debenzoylation. Procedure B The corresponding compound was dissolved in methanol (25 mL/ mmol) and triethy- lamine (6 mL/ mmol) was added to the resulting solution. The reaction mixture was refluxed overnight, the solvents evaporated, and the ensuing residue concentrated. Purification by flash chromatography was carried out using hexane-ethyl acetate mixtures, as eluent.

4.2.3. General Procedure for Silylation. Procedure C The corresponding compound was dissolved in dry DMF (20 mL/mmol), and to this solution imidazole (4 equiv.) was added. After stirring for 5–10 min in an ice bath, under argon, terbutyldiphenylsilyl chloride (1.2 equiv.) and a small amount of dimethylaminopiri- dine DMAP were added. The ice bath was removed, and the reaction mixture was left with stirring at room temperature for 24 h. The reaction mixture was then diluted with ethyl Molecules 2021, 26, 2909 7 of 12

acetate and extracted with a saturated aqueous NaHCO3 solution and brine. The combined organic solutions were dried over anhydrous MgSO4 and evaporated under vacuum. The resulting crude mixture was purified by chromatography on silica gel (eluent: hexane-ethyl acetate mixtures).

4.2.4. General Procedure for Characterization of Polyol Derivatives as Peracetates. Procedure D The corresponding polyol was dissolved in pyridine (1 mL/0.1 mmol substrate) and acetic anhydride (0.5 mL/mmol substrate) was then added. The reaction mixture was stirred at room temperature (normally 24 h). After completion of the reaction (t.l.c.), the solvent was evaporated, and the resulting crude mixture was purified by chromatography on silica gel (eluent: hexane-ethyl acetate mixtures).

4.3. Synthesis 4.3.1. BF2-Bodipy 11 This compound was prepared according to our previously described method [38], from phthalide and pyrrole.

4.3.2. Mannopyranosyl BODIPY 12 This compound was prepared by glycosylation of BODIPY 11 (26 mg, 0.088 mmol) with orthoester 4c (100 mg, 0.178 mmol), according to the general procedure for gly- cosylation, procedure A. Flash chromatography (hexane- ethyl acetate; 85:15) yielded 1 BODIPY-mannoside 12 (64 mg, 80%). H-NMR (500 MHz, CDCl3) δ 8.05–7.16 (m, 24H), 6.68 (dd, J = 12.4, 4.2 Hz, 2H), 6.47 (dd, J = 4.2, 1.8 Hz, 1H), 6.33 (dd, J = 4.3, 1.8 Hz, 1H), 5.40 (dd, J = 3.1, 1.9 Hz, 1H), 4.86 (d, J = 1.9 Hz, 1H), 4.79 (d, J = 10.7 Hz, 1H), 4.72–4.65 (m, 3H), 4.52–4.42 (m, 4H), 4.37 (d, J = 11.8 Hz, 1H), 4.01 (t, J = 9.6 Hz, 1H), 3.88–3.75 (m, 3H), 13 3.58 (dd, J = 10.9, 1.9 Hz, 1H), 3.50–3.44 (m, 1H) C-NMR (125 MHz, CDCl3) δ 165.7, 145.3, 145.2, 144.8, 138.7, 138.6, 138.2, 135.7, 135.4, 133.2, 132.9, 132.6, 131.2, 131.0 (×2), 130.2, 130.1 (×2), 130.0, 128.9, 128.5, 128.4 (×5), 128.2 (×2), 127.9, 127.7 (×2), 127.6 (×2), 119.2, 118.8, 97.5, 78.1, 75.3, 74.1, 73.5, 72.0, 71.6, 68.8 (×3), 68.3, 67.3, 51.1, 29.8; 19F-NMR (376 MHz, CDCl3) δ −145.4 (q, JB–F = 28.9 Hz), −145.4 (q, JB–F = 28.9 Hz); HRMS (ESI-TOF): calc for + C50H49BF2N3O7 [M + NH4] ; 852.37407 found 852.36969.

4.3.3. Mannopyranosyl BODIPY 13 This compound was obtained when applying the general procedure for debenzoy- lation, procedure B, to BODIPY-mannoside 12 (60 mg, 0.087 mmol) followed by flash chromatography (hexane- ethyl acetate; 6:4). Compound 13 (56 mg, 78%): 1H-NMR (300 MHz, CDCl3) δ 8.04–7.12 (m, 24H), 6.66 (ddd, J = 10.4, 4.2, 1.1 Hz, 2H), 6.48 (ddd, J = 4.2, 1.8, 0.7 Hz, 1H), 6.43 (ddd, J = 4.2, 1.8, 0.7 Hz, 1H), 5.42 (dd, J = 3.1, 2.0 Hz, 1H), 4.87–4.77 (m, 2H), 4.74–4.60 (m, 3H), 4.51–4.36 (m, 4H), 4.04 (t, J = 9.5 Hz, 1H), 3.98–3.88 (m, 1H), 3.78 (dd, J = 10.6, 3.5 Hz, 1H), 3.66–3.53 (m, 2H) 3.12 (s, 3H), 3.03 19 (s, 3H); F-NMR (376 MHz, CDCl3): showed not peaks at all; HRMS (ESI-TOF): calc + for C52H51BN2NaO9 [M + Na] ; 881.35682 found 881.35690.

4.3.4. Mannopyranosyl BODIPY 14 Treatment of compound 12 (80 mg, 0.096 mmoles) with sodium methoxide in MeOH, at 65 ◦C for 1 h resulted in the consumption of the starting material. Then, addition of solid NH4Cl and stirring for 15 min followed by filtration and solvent evaporation provided a residue that was purified by chromatography on silica gel (hexane-ethyl acetate; 3:7) to 1 give dimethoxyboron-derivative 14 (56 mg, 78%). H-NMR (300 MHz, CDCl3) δ 7.88–7.03 (19H), 6.68 (dd, J = 4.2, 1.3 Hz, 1H), 6.60 (dd, J = 4.2, 1.3 Hz, 1H), 6.42 (dt, J = 4.3, 1.8 Hz, 1H), 4.74 (d, J = 10.8 Hz, 1H), 4.59–4.35 (m, 9H), 3.78–3.50 (m, 6H), 3.38–3.33 (m, 1H), 3.20 13 (s, 3H), 3.06 (s, 3H); C-NMR (125 MHz, CDCl3) δ 152.8, 144.9, 144.5, 136.7, 136.6, 135.7, 133.7, 133.6, 130.4, 130.0, 129.8, 129.7, 129.4, 128.5 (×2), 128.4 (×2), 128.3 (×2), 128.1 (×2), Molecules 2021, 26, 2909 8 of 12

128.0 (×2), 127.8 (×2), 127.7 (×2), 118.5, 118.1, 100.6, 79.9, 75.2, 74.1, 73.6, 71.7, 71.4, 69.1, + 68.5, 68.3, 67.3, 50.3, 49.8 HRMS (ESI-TOF): calc for C45H47BN2NaO8 [M + Na] ; 777.33254 found 777.33546.

4.3.5. B(Ph)2-BODIPY 15 This compound was prepared by treatment of a toluene solution of a dipyrromethane intermediate (obtained by reaction of phthalide with pyrrole) (44 mg, 0.198 mmol), with triphenylborane (48 mg, 0.198 mmol). The mixture, under argon, was refluxed for 24 h. Then, the solvent was evaporated, and the residue dissolved in dichloromethane (10 mL), to which 10 mL of a 1M solution of NaOH were added. The ensuing mixture was kept with stirring for one night. The organic layer was separated and dried over MgSO4, filtered, and evaporated. The residue was purified by for chromatography on silica gel (hexane-ethyl 1 acetate; 8:2) to afford compound 15 (38 mg, 46%). H-NMR (400 MHz, CDCl3) δ 7.64–6.97 13 (m, 14H), 6.75 (d, J = 4.2 Hz, 2H), 6.55–6.39 (m, 2H), 4.35 (s, 2H) C-NMR (100 MHz, CDCl3) δ 145.5 (×2), 145.1, 139.7, 135.5, 133.8 (×2), 132.5, 131.7 (×2), 129.8, 129.7, 128.7 (×2), 128.2, 127.6 (×3), 127.1, 126.7, 126.2, 118.0 (×2), 62.9 HRMS (ESI-TOF): calc for C28H24BN2O8 [M + H]+; 415.19812 found 415.19815.

4.3.6. Mannopyranosyl BODIPY 5 This compound was prepared by glycosylation of BODIPY 15 (73 mg, 0.176 mmol) with MeOE 4c (150 mg, 0.264 mmol), according to the general procedure for glycosylation, procedure A. After standard work-up, purification by flash chromatography (hexane- ethyl acetate; 9:1) furnished a mixture of the 2-O-benzoyl derivative of compound 5 (102 mg, 72%) and “rearranged” methyl mannopyranoside (1HNMR). This mixture was dissolved in MeOH, under argon, and treated with NaOMe/MeOH at room temperature for 24 h. When t.l.c. showed disappearance of the fluorescent starting material, solid NH4Cl was added. The resulting solution was kept with stirring for 15 min, filtered, and the solvent was evaporated. Purification by flash chromatography (hexane-ethyl acetate; 7:3) allowed 1 the isolation of BODIPY-mannoside 5 (92 mg, 87%). H-NMR (500 MHz, CDCl3) δ 7.61 (s, 1H), 7.52 (s, 1H) 7.47–7.09 (m, 29H), 6.70 (dd, J = 26.9, 4.3 Hz, 2H), 6.43–6.34 (m, 2H), 4.74 (d, J = 10.7 Hz, 1H), 4.60 (d, J = 12.2 Hz, 1H), 4.53–4.39 (m, 4H), 4.37 (bs, 2H), 4.28 (d, J = 11.6 Hz, 1H), 3.73 (t, J = 9.5 Hz, 1H), 3.64–3.46 (m, 4H), 3.39–3.35 (m, 1H); 13C-NMR (125 MHz, CDCl3) δ 145.3 (×2), 145.2, 138.4, 138.1, 136.0, 135.6, 134.9, 133.8, 133.5 (×2), 132.2 (×3), 130.2, 129.6, 129.5, 129.2, 129.1, 128.6 (×2), 128.5 (×2), 128.4 (×3), 128.1 (×2), 128.0 (×2), 127.9, 127.8 (×2), 127.7 (×2), 127.6 (×2), 126.6, 126.3, 117.8, 117.6, 98.6, 80.2, 75.3, 74.1, + 73.5 (×2), 71.7, 71.3, 68.8, 67.7, 67.3 HRMS (ESI-TOF): calc for C55H55BN3O6 [M + NH4] ; 846.41876 found 846.41891.

4.3.7. BODIPY Disaccharide 16a This compound was prepared by glycosylation of 5 (70 mg, 0.083 mmol) with MeOE 4a (57 mg, 0.100 mmol), according to the general procedure for glycosylation, procedure A. Purification by flash chromatography (hexane-ethyl acetate; 7:3) afforded compound 16a 1 (62 mg, 52%). H-NMR (400 MHz, CDCl3) δ 8.08–7.05 (m, 49 H), 6.69 (ddd, J = 12.0, 4.3, 1.2 Hz, 2H), 6.39 (ddd, J = 19.1, 4.3, 1.8 Hz, 2H), 6.11 (t, J = 10.1 Hz, 1H), 5.93 (dd, J = 10.1, 3.2 Hz, 1H), 5.87 (dd, J = 3.2, 1.9 Hz, 1H), 5.17 (d, J = 2.0 Hz, 1H), 4.84 (d, J = 10.9 Hz, 1H), 4.80 (d, J = 1.9 Hz, 1H), 4.66 (d, J = 12.3 Hz, 1H), 4.60–4.39 (m, 7H), 4.42 (d, J = 12.1 Hz, 1H), 4.33 (dd, J = 12.3, 3.6 Hz, 1H), 4.24 (d, J = 12.0 Hz, 1H), 4.00 (t, J = 9.6 Hz, 1H), 3.79 (d, J = 2.4 Hz, 13 1H), 3.75–3.63 (m, 2H), 3.61–3.52 (m, 2H); C-NMR (125 MHz, CDCl3) δ 166.2, 165.6, 165.3, 165.1, 145.5, 145.4, 144.9, 138.5, 138.5, 138.3, 136.0, 135.2 (×2), 133.5 (×2), 133.2 (×3), 133.1 (×2), 132.5 (×2), 132.4, 130.3, 130.2, 130.0 (×6),129.9 (×2), 129.6 (×2), 129.4 (×2), 129.1, 128.9, 128.7 (×2), 128.6 (×2), 128.5 (×4), 128.4 (×5), 128.3 (×2), 127.9 (×3), 127.8, 127.7 (×2), 127.6 (×2), 127.5 (×3), 126.4 (×2) (65 signals for aromatic carbons) 117.8, 117.7, 99.4, 97.8, 79.5, 75.9, 75.2, 74.4, 73.3 (×2), 72.2, 72.0, 70.2, 70.0, 69.1, 68.7, 66.8, 66.7, 62.6 HRMS + + (ESI-TOF): calc for C89H77BKN2O15 [M + K] ; 1447.51131 found 1447.51484 (M + K) . Molecules 2021, 26, 2909 9 of 12

4.3.8. BODIPY-Disaccharide Tetraol 16b This compound was prepared according to the general procedure for debenzoylation, procedure B, from compound 16a (60 mg, 0.087 mmol). Purification by flash chromatogra- phy (hexane-ethyl acetate; 2:8) afforded fluorescent disaccharide 16b (40 mg, quantitative 1 yield). H-NMR (500 MHz, CDCl3) δ 7.56–7.11 (m, 29H), 6.69–6.66 (m,2H), 6.37 (ddd, J = 12.6, 4.3, 1.8 Hz, 2H), 4.93 (bs, 1H), 4.74 (d, J = 10.8 Hz, 1H), 4.67 (bs, 1H) 4.56–4.51 (m, 2H), 4.42–4.36 (m, 4H), 4.25 (d, J = 12.3 Hz, 1H), 3.98 (bs, 1H), 3.87–3.77 (m, 5H), 3.69–3.64 13 (m,3H), 3.59–3.52 (m, 4H), 3.44–3.37 (m, 4H) C-NMR (125 MHz, CDCl3) δ 145.5, 145.3, 145.0, 138.5 (×2), 138.4, 136.0, 135.2, 135.1, 133.7, 133.4, 133.2 (×2), 133.1, 132.9, 132.5 (×2), 130.3, 130.2, 129.6, 129.1, 128.8 (22), 128.5 (×5), 128.4 (×2), 128.0 (×2), 127.8 (×3), 127.7 (×3), 127.6 (×4), 126.5, 126.4, 117.9 (×2), 101.5, 97.6, 79.5, 75.3, 75.2, 74.4, 73.4, 72.5, 72.1, 72.0, 71.6, 70.9, 68.8, 66.6, 61.6; API-ES positive mode: [M + Na]+ = 1031.3.

4.3.9. BODIPY-Disaccharide Silylated Triol 6 The general procedure for silylation, procedure C, was applied to tetraol 16b (56 mg, 0.056 mmol), although this time pyridine, rather than DMF, was used as solvent. Purifi- cation by flash chromatography (hexane-ethyl acetate; 6:4) yielded triol 6 (48 mg, 69%). 1 H-NMR (400 MHz, CDCl3) δ 7.72–7.10 (m, 39H), 6.64 (ddd, J = 5.6, 4.3, 1.2 Hz, 2H), 6.34 (ddd, J = 12.6, 4.3, 1.8 Hz, 2H), 4.97 (d, J = 1.7 Hz, 1H), 4.76 (d, J = 10.8 Hz, 1H), 4.65–4.59 (m, 2H), 4.54–4.38 (m, 4H), 4.36 (bs 2H), 4.18 (d, J = 12.2 Hz, 1H), 3.99 (bs, 1H), 3.87–3.57 (m, 13 13H), 3.45–3.40 (m, 2H),1.04 (s, 9H) C-NMR (100 MHz, CDCl3) δ 145.5, 145.4, 145.1, 138.8, 138.7, 138.5, 136.1, 135.8, 135.2, 133.4, 133.2, 133.1, 133.0, 132.7, 130.2, 129.5, 129.3, 128.6, 128.5, 128.1, 128.0, 127.8, 127.7, 127.6, 127.5, 126.5 (48 aromatic carbons), 118.0, 117.9, 101.2, 98.1, 79.9, 75.3, 74.6, 73.5 (×2), 72.3, 72.1 (×2), 71.5 (×2), 71.4, 70.5 (×2), 70.1, 69.1, 66.6, 65.1, 53.7, 27.1 (×3), 19.5; API-ES, positive mode: [M + Na]+ = 1269.30; HRMS (ESI-TOF): calc + for C156H155BN2O26Si3 [M + Na] ; 2591.02041 found 2591.01683.

4.3.10. Thioglycosyl Disaccharide 8 According to the general procedure for glycosylation, procedure A, thioglycoside 7 (50 mg, 0.098 mmol) was glycosylated with orthoester 4b (146 mg, 0.196 mmol) in CH2Cl2 (3 mL). After 5 min, the reaction was quenched, the organic extract concentrated, and the resulting residue chromatographed over silica gel flash column (hexane-ethyl acetate; 9:1) to give diol 8 (65 mg, 58%). For the sake of characterization, and according to the general procedure for acetylation, procedure D, the corresponding peracetyl derivative 8-Acet was 21 ◦ 1 prepared (68 mg, quantitative yield). [α]D : −39.3 ,(c 0.8, CHCl3) H-NMR (400 MHz, CDCl3) δ 8.18–7.10 (m, 40H), 6.35 (t, J = 10.2 Hz, 1H), 5.71 (dd, J = 10.3, 3.3 Hz, 1H), 5.53–5.45 (m, 4H), 5.32 (d, J = 1.8 Hz, 1H), 4.38–4.34 (m, 1H), 4.25–4.20 (m, 2H), 3.92–3.80 (m, 2H), 3.78–3.61 (m, 2H), 2.20 (s, 3H), 2.12 (s, 3H), 1.07 (s, 9H), 1.06 (s, 9H) 13C-NMR (100 MHz, CDCl3) δ 170.5, 170.1, 165.8, 165.6, 165.5, 136.0 (×4), 135.9 (×2), 135.7 (×2), 133.9, 133.7, 133.5, 133.4, 133.3, 133.2, 133.0, 131.9 (×2), 130.2 (×2), 130.0 (×4), 129.9 (×2), 129.8, 129.7 (×2), 129.5 (×2), 129.3 (×2), 128.8 (×2), 128.6 (×2), 128.5 (×2), 127.9 (×4), 127.8 (×2), 99.4, 86.3, 75.6, 73.3, 72.9, 72.2, 71.2, 70.3, 68.2, 66.2, 63.2, 61.9, 26.95 (×3), 26.86 (×3), 21.7, 21.0, + 19.5 (×2); API-ES, positive mode:1324.5 [M + NH4] .

4.3.11. 1,2-Methyl Orthoester Disaccharide 9 Benzoylation (BzCl, pyridine) of compound 8 (498 mg, 0.41 mmol), followed by purifi- cation by flash chromatography (hexane-ethyl acetate; 85:15) provided the corresponding benzoylated disaccharide intermediate 8-Bzl (450 mg, 88%). A portion of this compound (298 mg, 0.208 mmol) was dissolved in CH2Cl2 (3 mL), and cooled to 0 ºC, in the darkness, then bromine (15 µL, 0.314 mmol) was added. When the starting material had disappeared (t.l.c.) the reaction mixture was washed with 10% aqueous sodium thiosulfate solution containing sodium bicarbonate saturated aqueous solution, and water. The organic ex- tract was dried over Na2SO4, filtered, and concentrated. Without further purification, the residue was dissolved in acetonitrile (1 mL) to which solution, methanol (84 µL), tetra- Molecules 2021, 26, 2909 10 of 12

butylammonium bromide (Bu4NBr) (47 mg), sodium bicarbonate (35 mg), and molecular sieves 4Å (previously dried) were added. The resulting reaction mixture was stirred for one night, the molecular sieves were then filtered, and the solvent concentrated. The ensuing residue was purified by flash chromatography (hexane-ethyl acetate; 9:1, containing 1% of triethylamine ) to afford the 1,2-methyl orthoester disaccharide 9 (182.6 mg, 65% (two 21 1 steps)) [α]D : −89.2 (c 1.2, CHCl3) H-NMR (400 MHz, CDCl3) δ 8.05–7.09 (m, 45H), 6.20 (t, J = 10.1 Hz, 1H), 5.84 (dd, J = 10.2, 3.3 Hz, 1H), 5.62 (dd, J = 9.8, 8.7 Hz, 1H), 5.50 (d, J = 3.0 Hz, 1H), 5.44 (dd, J = 3.4, 1.8 Hz, 1H), 5.27 (d, J = 1.8 Hz, 1H), 4.84 (dd, J = 4.1, 3.0 Hz, 1H), 4.50 (d, J = 10.1 Hz, 1H), 4.23 (d, J = 9.8 Hz, 1H), 3.95–3.88 (m, 2H), 3.77–3.62 13 (m, 3H), 2.96 (s, 3H), 1.06 (s, 9H), 0.91 (s, 9H). C-NMR (100 MHz, CDCl3) δ 165.5, 165.3 (×2), 165.2, 136.2, 136.0 (×2), 135.8 (×6), 133.5, 133.4, 133.3, 133.2, 133.1, 130.1 (×4), 130.0 (×2), 129.9 (×3), 129.8 (×2), 129.7 (×3), 129.6, 129.5, 129.4, 128.7 (×2), 128.6 (×2), 128.5 (×2), 128.4 (×4), 127.8 (×3), 127.7 (×4), 126.9 (×2), 122.9, 100.1, 98.1, 78.6, 77.9, 75.5, 72.2, 71.0, 70.5, 68.2, 66.6, 63.7, 62.4, 51.5, 26.9 (×3), 26.9 (×3), 19.5, 19.3 HRMS (ESI-TOF): calc + + for C80H84NO16Si2 [M + NH4] 1370.5323; found 1370.5323 [M + NH4] .

4.3.12. BODIPY-Tetrasaccharide 10 BODIP disaccharide 6 (21 mg, 0.017 mmol) was glycosylated with glycosyl donor 9 (vide infra) (45 mg, 0.034 mmol), according to the general procedure for glycosylation, procedure A. Purification by flash chromatography (hexane-ethyl acetate; 8:2) yielded 1 tetrasaccharide 10 (23 mg, 53%). H-NMR (500 MHz, CDCl3) δ 8.05–6.98 (m, 84H), 6.62 (td, J = 4.3, 1.3 Hz, 2H), 6.31 (dd, J = 4.3, 1.8 Hz, 1H), 6.28 (dd, J = 4.3, 1.8 Hz, 1H), 6.21 (t, J = 10.1 Hz, 1H), 5.66 (d, J = 8.7 Hz, 1H), 5.59–5.52 (m, 2H), 5.40 (bs, 1H) 5.37 (m, 1H), 5.31 (bs, 1H), 5.20 (bs, 1H), 4.71–4.69 (m, 2H), 4.62–4.45 (m, 6H), 4.39–4.28 (m, 5H), 4.21–4.03 (m, 4H), 3.99–3.68 (m, 12H), 3.64–3.56 (m, 2H), 3.49–3.35 (m, 4H), 1.02 (s, 9H), 0.99 (s, 9H), 13 0.95 (s, 9H) C-NMR (125 MHz, CDCl3) δ 165.7, 165.5, 165.2, 165.0 (×2), 145.4, 145.3, 144.9, 138.6, 138.6, 138.4, 138.0, 136.2, 135.9 (×4), 135.8 (×3), 135.7 (×3), 135.6 (×4), 135.1, 133.6, 133.5, 133.4, 133.3, 133.2, 133.1(×3), 133.0, 132.9, 132.7 (×2), 132.6 (×2), 132.3, 130.2 (×2), 130.1 (×2), 130.0 (×2), 129.9, 129.8 (×6), 129.7 (×2), 129.5 (×2), 129.4 (×2), 129.2 (×3), 128.8, 128.7, 128.5 (×4), 128.4 (×11), 128.2, 128.0, 127.9, 127.8, 127.7 (×5), 127.6, 127.4 (×4), 127.2, 126.5, 126.4, 125.4, 117.9 (×2), 101.1, 99.1, 98.2, 98.0, 81.5, 80.1, 76.2, 75.1, 74.6, 73.4 (×2), 72.9, 72.3 (×2), 72.2, 72.0, 71.9 (×2), 71.8, 70.6, 70.4, 69.5, 69.1, 68.3, 66.6, 66.2, 65.8, 64.4, 63.8, 61.5, 53.6, 27.0 (×3), 26.8 (×3), 26.7 (×3), 19.5, 19.3, 19.0; HRMS (ESI-TOF): calc for + C156H155BN2O26Si3 [M + Na] ; 2591.02041 found 2591.01683.

Supplementary Materials: The following are available online, Phtophysical data (Table S1). Exper- imental conditions for photophysical properties, and quantum mechanical calculations. 1H- and 13C-NMR of all compounds. Author Contributions: Development of the synthetic scheme, structural analysis of the saccharide derivatives, conceptualization of the results, J.V.; Design of the saccharide synthesis, conceptualization of the results, C.U.; Design of the saccharide and BODIPY syntheses, preparation of the manuscript, A.M.G.; Photophysical experiments, E.A.-Z.; Photophysical experiments, conceptualization of the re- sults, preparation of the manuscript, J.B.; Laser experiments, supervision, I.G.-M.; Conceptualization of the results, supervision, manuscript preparation, J.C.L.; Funding acquisition, A.M.G., J.B., I.G.-M., J.C.L. All authors have read and agreed to the published version of the manuscript. Funding: This research was funded by Spanish MINISTERIO DE ECONOMIA Y COMPETITIVIDAD, GOBIERNO DE ESPAÑA (projects MAT2017–83856-C3-1-P and 3-P, PiD2020-1147555GB-C33), the MINISTERIO DE CIENCIA INNOVACION Y UNIVERSIDADES (project RTI2018-094862-B-I00), and the GOBIERNO VASCO (project IT912-16). Data Availability Statement: Data sharing is not applicable to this article. Acknowledgments: E.A.-Z. Thanks the MINISTERIO DE ECONOMIA Y COMPETITIVIDAD for a postdoctoral contract. The authors thank SGIker of UPV/EHU for technical support with the computational calculations, which were carried out in the “arina” informatic cluster. Molecules 2021, 26, 2909 11 of 12

Conflicts of Interest: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results. Sample Availability: No samples of the compounds are available from the authors.

References 1. Ferro, V.; Hammond, E.; Fairweather, J.K. The development of inhibitors of heparanase, a key enzyme involved in tumour metastasis, angiogenesis and inflammation. Rev. Med. Chem. 2004, 4, 693–702. [CrossRef][PubMed] 2. Hammond, E.; Bytheway, I.; Ferro, V. Heparanase as a target for anticancer therapeutics: New developments and future prospects. In New Developments in Therapeutic Glycomics; Delehedde, M., Lortat-Jacob, H., Eds.; Research Signpost: Trivandrum, India, 2006; pp. 251–282. 3. Miao, H.Q.; Liu, H.; Navarro, E.; Kussie, P.; Zhu, Z. Development of heparanase inhibitors for anti-cancer therapy. Curr. Med. Chem. 2006, 13, 2101–2111. 4. McKenzie, E.A. Heparanase: A target for drug discovery in cancer and inflammation. Br. J. Pharmacol. 2007, 151, 1–14. [CrossRef] 5. Jia, L.; Ma, S. Recent advances in the discovery of heparanase inhibitors as anticancer agents. Eur. J. Med. Chem. 2016, 121, 209–220. [CrossRef] 6. Chhabra, M.; Ferro, V. The development of assays for heparanase enzymatic activity: Towards a gold standard. Molecules 2018, 23, 2971. [CrossRef] 7. Chhabra, M.; Ferro, V. PI-88 and related heparan sulfate mimetics. In Heparanase: From Basic Research to Clinical Applications, 1st ed.; Vlodavsky, I., Sanderson, R.D., Ilan, N., Eds.; Springer-Nature: Cham, Switzerland, 2020; Chapter 19; pp. 473–492. 8. Mechref, Y.; Novotny, M.V. Structural investigations of glycoconjugates at high sensitivity. Chem. Rev. 2002, 102, 321–369. [CrossRef] 9. Xia, B.; Kawar, Z.S.; Ju, T.; Alvarez, R.A.; Sachdev, G.P.; Cummings, R.D. Versatile fluorescent derivatization of glycans for glycomic analysis. Nat. Methods 2005, 2, 845–850. [CrossRef][PubMed] 10. Kobayashi, H.; Ogawa, M.; Alford, R.; Choyke, P.L.; Urano, Y. New strategies for fluorescent probe design in medical diagnostic imaging. Chem. Rev. 2010, 110, 2620–2640. [CrossRef][PubMed] 11. Ueno, T.; Nagano, T. Fluorescent probes for sensing and imaging. Nat. Methods 2011, 8, 642–645. [CrossRef][PubMed] 12. Keithley, R.B.; Rosenthal, A.S.; Essaka, D.C.; Tanaka, H.; Yoshimura, Y.; Palcic, M.M.; Hindsgaul, O.; Dovichi, N.J. Capillary elec- trophoresis with three-color fluorescence detection for the analysis of glycosphingolipid metabolism. Analyst 2013, 138, 164–170. [CrossRef] 13. Louret, A.; Burgess, K. BODIPY Dyes and their derivatives: Syntheses and spectroscopic properties. Chem. Rev. 2007, 107, 4891–4932. 14. Ziessel, R.; Ulrich, G.; Harriman, A. The chemistry of BODIPY: A new El Dorado for fluorescence tools. New. J. Chem. 2007, 31, 496–501. [CrossRef] 15. Ulrich, G.; Ziessel, R.; Harriman, A. The chemistry of fluorescent BODIPY dyes: Versatility unsurpassed. Angew. Chem. Int. Ed. 2008, 47, 1184–1201. [CrossRef][PubMed] 16. Boens, N.; Verbelen, B.; Dehaen, W. Postfunctionalization of the BODIPY core: Synthesis and spectroscopy. Eur. J. Org. Chem. 2015, 30, 6577–6595. [CrossRef] 17. Bañuelos, J. BODIPY Dye, the most versatile fluorophore ever? Chem. Rec. 2016, 16, 335–348. [CrossRef] 18. Boens, N.; Verbelen, B.; Ortiz, M.J.; Jiao, L.; Dehaen, W. Synthesis of BODIPY dyes through postfunctionalization of the boron dipyrromethene core. Coord. Chem. Rev. 2019, 399, 213024. [CrossRef] 19. Uriel, C.; Permingeat, C.; Ventura, J.; Avellanal-Zaballa, E.; Bañuelos, J.; Garcia-Moreno, I.; Gómez, A.M.; López, J.C. BODIPYs as chemically stable fluorescent tags for synthetic glycosylation strategies towards fluorescently labeled saccharides. Chem. Eur. J. 2020, 26, 5388–5399. [CrossRef] 20. Ekblad, M.; Adamiak, B.; Bergstrom, T.; Johnstone, K.D.; Karoli, T.; Liu, L.; Ferro, V.; Trybala, E. A highly lipophilic sulfated tetrasaccharide glycoside related to muparfostat (PI-88) exhibits virucidal activity against herpes simplex virus. Antivir. Res. 2010, 86, 196–203. [CrossRef] 21. Handley, P.N.; Carroll, A.; Ferro, V. New structural insights into the phosphate fraction of Pichia (Hansenula) holstii NRRL Y2448 phosphomannan. Carbohydr. Res. 2017, 446–447, 68–75. [CrossRef] 22. Gu, G.; Wei, G.; Du, Y. Synthesis of a 6V-sulfated mannopentasaccharide analogue related to PI-88. Carbohydr. Res. 2004, 339, 1155–1162. [CrossRef] 23. Namme, R.; Mitsugi, T.; Takahashi, H.; Ikegami, S. Synthesis of PI-88 analogue using novel O-glycosidation of exo- methylenesugars. Tetrahedron Lett. 2005, 46, 3033–3036. [CrossRef] 24. Fairweather, J.K.; Hammond, E.; Johnstone, K.D.; Ferro, V. Synthesis and heparanase inhibitory activity of sulfated mannooligosac- charides related to the antiangiogenic agent PI-88. Bioorg. Med. Chem. 2008, 16, 699–709. [CrossRef] 25. Valerio, S.; Pastore, A.; Adinolfi, M.; Iadonisi, A. Sequential one-pot glycosidations catalytically promoted: Unprecedented strategy in oligosaccharide synthesis for the straightforward assemblage of the antitumor PI-88 pentasaccharide. J. Org. Chem. 2008, 73, 4496–4503. [CrossRef][PubMed] Molecules 2021, 26, 2909 12 of 12

26. Liu, L.; Johnstone, K.D.; Fairweather, J.K.; Dredge, K.; Ferro, V. An improved synthetic route to the potent angiogenesis inhibitor benzyl Manα(1→3)-Manα(1→3)-Manα(1→3)-Manα(1→2)-Man hexadecasulfate. Aust. J. Chem. 2009, 62, 546–552. [CrossRef] 27. Pastore, A.; Adinolfi, M.; Iadonisi, A.; Valerio, S. One-pot catalytic glycosidation/Fmoc removal−An iterable sequence for straightforward assembly of oligosaccharides related to HIC gp120. Eur. J. Org. Chem. 2010, 4, 711–718. [CrossRef] 28. Mong, K.-K.T.; Shiau, K.-S.; Lin, Y.H.; Cheng, K.-C.; Lin, C.-H. A concise synthesis of single components of partially sulfated oligomannans. Org. Biomol. Chem. 2015, 13, 11550–11560. [CrossRef] 29. Kochetkov, N.K.; Khorlin, A.J.; Bochkov, A.F. New synthesis of glycosides. Tetrahedron Lett. 1964, 5, 289–293. [CrossRef] 30. Kochetkov, N.K.; Khorlin, A.J.; Bochkov, A.F. A new method of glycosylation. Tetrahedron 1967, 23, 693–707. [CrossRef] 31. Uriel, C.; Ventura, J.; Gómez, A.M.; López, J.C.; Fraser-Reid, B. Methyl 1,2-orthoesters as useful glycosyl donors in glycosylation reactions: A comparison with n-pent-4-enyl 1,2 orthoesters. Eur. J. Org. Chem. 2012, 16, 3122–3131. [CrossRef] 32. Uriel, C.; Ventura, J.; Gómez, A.M.; López, J.C.; Fraser-Reid, B. Unexpected stereocontrolled access to 1α,1’β- from methyl 1,2-ortho esters. J. Org. Chem. 2012, 77, 795–800. [CrossRef][PubMed] 33. Uriel, C.; Rijo, P.; Fernandes, A.S.; Gómez, A.M.; Fraser-Reid, B.; López, J.C. Methyl 1,2-orthoesters in acid-washed molecular sieves mediated glycosylations. Chem. Select 2016, 1, 6011–6015. [CrossRef] 34. Lu, J.; Fraser-Reid, B. The antituberculosis, antitumor, multibranched dodecafuranoarabinan of Mycobacterium species has been assembled from a single n-pentenylfuranoside source. Chem. Commun. 2005, 7, 862–864. [CrossRef][PubMed] 35. Jayaprakash, K.N.; Lu, J.; Fraser-Reid, B. Synthesis of a lipomannan component of the cell-wall complex of Mycobacterium tuberculosis is based on Paulsen’s concept of donor/acceptor “match”. Angew. Chem. Int. Ed. 2005, 44, 5894–5898. [CrossRef] 36. Fraser-Reid, B.; Loópez, J.C. Orthoesters and Related Derivatives. In Handbook of Chemical Glycosylation: Advances in Stereoselectivity and Therapeutic Relevance; Demchenko, A.V., Ed.; Wiley-VCH: New York, NY, USA, 2008; Chapter 5.1. 37. Roacho, R.I.; Metta-Magaña, A.J.; Peña-Cabrera, E.; Pannell, K.H. Synthesis, structural characterization, and spectroscopic properties of the ortho, meta and para isomers of 8-(HOCH2-C6H4)-BODIPY and 8-(MeOC6H4)-BODIPY. J. Phys. Org. Chem. 2013, 26, 345–351. [CrossRef] 38. Del Rio, M.; Lobo, F.; Lopez, J.C.; Oliden, A.; Bañuelos, J.; Lopez-Arbeloa, I.; Garcia-Moreno, I.; Gomez, A.M. One-pot synthesis of rotationally restricted, conjugatable, BODIPY derivatives from phthalides. J. Org. Chem. 2017, 82, 1240–1247. [CrossRef] 39. Bodio, E.; Goze, C. Investigation of B-F substitution of BODIPY and aza-BODIPY dyes: Development of B-O and B-C BODIPYs. Dyes Pigment. 2019, 160, 700–710. [CrossRef] 40. Yang, L.; Simionescu, R.; Lough, A.; Yan, H. Some observations relating to the stability of the BODIPY fluorophore under acidic and basic conditions. Dyes Pigment. 2011, 91, 264–267. [CrossRef] 41. Nguyen, A.L.; Fronczek, F.R.; Smith, K.M.; Vicente, M.G.H. Synthesis of 4,40-functionalized BODIPYs from dipyrrins. Tetrahedron Lett. 2015, 56, 6348–6351. [CrossRef] 42. Lopez, J.C.; Agocs, A.; Uriel, C.; Gomez, A.M.; Fraser-Reid, B. Iterative, orthogonal strategy for oligosaccharide synthesis based on the regioselective glycosylation of polyol acceptors with partially unprotected n-pentenyl-orthoesters: Further evidence for reciprocal donor acceptor selectivity. Chem. Commun. 2005, 40, 5088–5090. [CrossRef][PubMed] 43. Wei, S.; Zhao, J.; Shao, H. A facile method for the preparation of orthoesters promoted by anhydrous sodium bicarbonate. Can. J. Chem. 2009, 87, 1733–1737. [CrossRef] 44. Vidadala, S.R.; Thadke, S.A.; Hotha, S. Orthogonal activation of propargyl and n-pentenyl glycosides and 1,2-orthoesters. J. Org. Chem. 2009, 74, 9233–9236. [CrossRef][PubMed] 45. Duran-Sampedro, G.; Esnal, I.; Agarrabeitia, A.R.; Bañuelos-Prieto, J.; Cerdan, L.; Garcia-Moreno, I.; Costela, A.; Lopez-Arbeloa, I.; Ortiz, M.-J. First highly efficient and photostable E and C derivatives of 4,4,-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) as dye lasers in the liquid phase, thin films, and solid-state rods. Chem. Eur. J. 2014, 20, 2646–2653. [CrossRef][PubMed] 46. Patel, I.; Woodcock, J.; Beams, R.; Stranick, S.J.; Niewendaal, R.; Gilman, J.W.; Mulenos, M.R.; Sayes, C.M.; Salari, M.; DeLoid, G.; et al. Fluorescently labeled nanofibers for environmental health and safety studies. Nanomaterials 2021, 11, 1015. [CrossRef][PubMed]