(12) United States Patent (10) Patent No.: US 9,512,236 B2 Adams Et Al

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(12) United States Patent (10) Patent No.: US 9,512,236 B2 Adams Et Al USOO951 2236B2 (12) United States Patent (10) Patent No.: US 9,512,236 B2 Adams et al. (45) Date of Patent: Dec. 6, 2016 (54) AMINO ACID SEQUENCES DIRECTED (52) U.S. Cl. AGAINST GPCRS AND POLYPEPTIDES CPC ......... C07K 16/468 (2013.01); C07K 16/2866 COMPRISING THE SAME FOR THE (2013.01); C07K 16/2869 (2013.01); C07K TREATMENT OF GPCR-RELATED 231 7/22 (2013.01); C07K 23.17/31 (2013.01); DISEASES AND DISORDERS C07K 23.17/34 (2013.01); C07K 23.17/35 (2013.01); C07K 2317/92 (2013.01) (71) Applicant: Ablynx N.V., Zwijnaarde (BE) (58) Field of Classification Search None (72) Inventors: Hendrik Adams, Rotterdam (NL); See application file for complete search history. Michael John Scott Saunders, Brussels (BE); Johannes Joseph Wilhelmus De Haard, Oudelande (56) References Cited (NL); Christophe Blanchetot, Destelbergen (BE); Martine Smit, U.S. PATENT DOCUMENTS Amsterdam (NL); Regorius Leurs, 8,937,164 B2 1/2015 Descamps et al. Amsterdam (NL); Sven Jahnichen, 9,212,226 B2 12/2015 Blanchetot et al. Schwarme (DE); Peter Vanlandschoot, 2002/0106.739 A1 8/2002 Oakley et al. 2004/0170634 A1 9, 2004 Burns et al. Bellem (BE); Francis Descamps, 2007/0167443 A1 7/2007 Melikian et al. Roeselare (BE); Maria Gonzalez 2010.0062004 A1 3/2010 Adams et al. Pajuelo, Porto (PT); Pascal Gerard 2011/0206660 A1 8/2011 Blanchetot et al. Merchiers, Tielen (BE); Catelijne 2011/0262438 A1 10/2011 Descamps et al. Stortelers, Ghent (BE); Philippe Van 2014/0178390 A1 6/2014 Descamps et al. Rompaey, Melle (BE); David Andre 2014/0227 270 A1 8/2014 Descamps et al. Baptiste Maussang-Detaille, Rotterdam (NL); Maarten Van Roy, Zwijnaarde FOREIGN PATENT DOCUMENTS (BE) EP O 368 684 A1 5, 1990 EP O 542 810 5, 1993 (73) Assignee: Ablynx N.V., Zwijnaarde (BE) EP 1316 801 A1 9, 2002 JP 2008-539772 A 11/2008 (*) Notice: Subject to any disclaimer, the term of this JP 2008-539775 A 11/2008 patent is extended or adjusted under 35 (Continued) U.S.C. 154(b) by 0 days. OTHER PUBLICATIONS (21) Appl. No.: 13/650,600 No Author Listed Nature Reviews Drug Discovery GPCR Ques (22) Filed: Oct. 12, 2012 tionnaire Participants. The state of GPCR research in 2004. Nat Rev Drug Discov. Jul. 2004:3(7):575, 577-626. (65) Prior Publication Data (Continued) US 2013/O 130379 A1 May 23, 2013 Primary Examiner — Ruixiang Li Related U.S. Application Data (74) Attorney, Agent, or Firm — Wolf, Greenfield & (63) Continuation-in-part of application No. 12/520,299. Sacks, P.C. filed as application No. PCT/EP2007/064243 on Dec. 19, 2007, now abandoned, application No. (57) ABSTRACT 13/650,600, which is a continuation-in-part of application No. 12/992,982, filed as application No. The present invention relates to amino acid sequences that PCT/EP2009/056026 on May 18, 2009, now Pat. No. are directed against G-protein coupled receptors (GPCRs), 9,212.226, application No. 13/650,600, which is a as well as to compounds or constructs, and in particular continuation-in-part of application No. proteins and polypeptides, that comprise or essentially con PCT/EP2012/055499, filed on Mar. 28, 2012. sist of one or more such amino acid sequences. The inven tion also relates to nucleic acids encoding Such amino acid (60) Provisional application No. 60/875,860, filed on Dec. sequences and; to methods for preparing such amino acid 19, 2006, provisional application No. 61/053,847, sequences and polypeptides; to host cells expressing or filed on May 16, 2008, provisional application No. capable of expressing Such amino acid sequences or poly 61/102,142, filed on Oct. 2, 2008, provisional peptides; to compositions, and in particular to pharmaceu application No. 61/468,250, filed on Mar. 28, 2011, tical compositions, that comprise Such amino acid provisional application No. 61/540.272, filed on Sep. sequences, polypeptides, nucleic acids and/or host cells; and 28, 2011, provisional application No. 61/600,263, to uses of Such amino acid sequences or polypeptides, filed on Feb. 17, 2012. nucleic acids, host cells and/or compositions, in particular for prophylactic, therapeutic or diagnostic purposes. (51) Int. C. C07K I6/46 (2006.01) C07K 6/28 (2006.01) 4 Claims, 3 Drawing Sheets US 9,512.236 B2 Page 2 (56) References Cited Halaby et al., The immunoglobulin fold family: Sequence analysis and 3D structure comparisons. Protein Eng. Jul. 1999; 12(7):563-71. Hassaine et al., Semliki Forest virus vectors for overexpression of FOREIGN PATENT DOCUMENTS 101 G protein-coupled receptors in mammalian host cells. Protein JP 2010-500876 A 1, 2010 Expr Purif. Feb. 2006:45(2):343-51. Epub Jul. 11, 2005. JP 2010-5069 12 A 3, 2010 Hoffman et al., A biosensor assay for studying ligand-membrane WO WO 91/O1743 A1 2, 1991 receptor interactions: binding of antibodies and HIV-1 Env to WO WO99/50461 A1 10, 1999 chemokine receptors. Proc Natl Acad Sci U S A. Oct. 10, WO WO O1/45746 A2 6, 2001 WO WO O2/O76489 A1 10, 2002 2000:97(21): 11215-20. WO WO 03/050531 A2 6, 2003 Holliger et al., Engineered antibody fragments and the rise of single WO WO 03/0668.30 A2 8, 2003 domains. Nat Biotechnol. Sep. 2005:23(9): 1126-36. WO WO 2004/041867 A2 5, 2004 Holt et al., Domain antibodies: proteins for therapy. Trends WO WO 2004/051268 A1 6, 2004 Biotechnol. Nov. 2003:21(11):484-90. WO WO 2004/064595 A2 8, 2004 Hoogenboom et al., Selection-dominant and nonaccessible epitopes WO WO 2004/106377 A1 12/2004 on cell-surface receptors revealed by cell-panning with a large WO WO 2005/O18629 3, 2005 phage antibody library. Eur J. Biochem. Mar. 1999:260(3):774-84. WO WO 2005/O19824 3, 2005 WO WO 2005/044792 A2 5, 2005 Hoogenboom, Selecting and screening recombinant antibody librar WO WO 2006/003388 A2 1, 2006 ies. Nat Biotechnol. Sep. 2005:23(9): 1105-16. WO WO 2006/03O220 A1 3, 2006 Houamed et al., Cloning, expression, and gene structure of a G WO WO 2006/038O27 A2 4/2006 protein-coupled glutamate receptor from rat brain. Science. May 31, WO WO 2006/047417 A2 5, 2006 1991:252(5010): 1318-21. 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WO WO 2010/0701.45 A2 6, 2010 Jähnichen et al., CXCR4 nanobodies (VHH-based single variable WO WO 2010, 141986 A1 12, 2010 domains) potently inhibit chemotaxis and HIV-1 replication and WO WO 2011 117423 A1 9, 2011 mobilize stem cells. Proc Natl Acad Sci U S A. Nov. 23, 2010; 107(47):20565-70. Epub Nov. 8, 2010. OTHER PUBLICATIONS Kenakin, Efficacy as a vector: the relative prevalence and paucity of inverse agonism. Mol Pharmacol. Jan. 2004:65(1):2-11. André et al., Enhancing functional production of G protein-coupled Kenakin, Principles: receptor theory in pharmacology. Trends Pharmacol Sci. Apr. 2004:25(4): 186-92. receptors in Pichia pastoris to levels required for structural studies Kiefer. In vitro folding of alpha-helical membrane proteins. via a single expression screen. Protein Sci. May 2006:15(5): 1115 Biochim Biophys Acta. Feb. 17, 2003; 1610(1):57-62. 26. Epub Apr. 5, 2006. Kim et al., Enhancement of colorectal tumor targeting using a novel Baribaud et al., Antigenically distinct conformations of CXCR4. J biparatopic monoclonal antibody against carcinoembryonic antigen Virol. Oct. 2001:75(19):8957- 67. in experimental radioimmunoguided Surgery. Int J Cancer. Feb. 1. Bednarek et al., Ligands of the melanocortin receptors, 2002-2003 2002;97(4): 542-7. update. Expert Opin Ther Patents. 2004;14(3):327-336. Lagane et al., CXCR4 dimerization and beta-arrestin-mediated Binz et al., Engineering novel binding proteins from nonim signaling account for the enhanced chemotaxis to CXCL 12 in munoglobulin domains. Nat Biotechnol. Oct. 2005:23(10): 1257-68. WHIM syndrome. Blood. Jul. 1, 2008:112(1):34-44. doi:10.1182/ Carnec et al., Anti-CXCR4 monoclonal antibodies recognizing blood-2007-07-102103. 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