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Artificial Intelligence in Health Care: the Hope, the Hype, the Promise, the Peril
Artificial Intelligence in Health Care: The Hope, the Hype, the Promise, the Peril Michael Matheny, Sonoo Thadaney Israni, Mahnoor Ahmed, and Danielle Whicher, Editors WASHINGTON, DC NAM.EDU PREPUBLICATION COPY - Uncorrected Proofs NATIONAL ACADEMY OF MEDICINE • 500 Fifth Street, NW • WASHINGTON, DC 20001 NOTICE: This publication has undergone peer review according to procedures established by the National Academy of Medicine (NAM). Publication by the NAM worthy of public attention, but does not constitute endorsement of conclusions and recommendationssignifies that it is the by productthe NAM. of The a carefully views presented considered in processthis publication and is a contributionare those of individual contributors and do not represent formal consensus positions of the authors’ organizations; the NAM; or the National Academies of Sciences, Engineering, and Medicine. Library of Congress Cataloging-in-Publication Data to Come Copyright 2019 by the National Academy of Sciences. All rights reserved. Printed in the United States of America. Suggested citation: Matheny, M., S. Thadaney Israni, M. Ahmed, and D. Whicher, Editors. 2019. Artificial Intelligence in Health Care: The Hope, the Hype, the Promise, the Peril. NAM Special Publication. Washington, DC: National Academy of Medicine. PREPUBLICATION COPY - Uncorrected Proofs “Knowing is not enough; we must apply. Willing is not enough; we must do.” --GOETHE PREPUBLICATION COPY - Uncorrected Proofs ABOUT THE NATIONAL ACADEMY OF MEDICINE The National Academy of Medicine is one of three Academies constituting the Nation- al Academies of Sciences, Engineering, and Medicine (the National Academies). The Na- tional Academies provide independent, objective analysis and advice to the nation and conduct other activities to solve complex problems and inform public policy decisions. -
Chapter 5 Names, Bindings, and Scopes
Chapter 5 Names, Bindings, and Scopes 5.1 Introduction 198 5.2 Names 199 5.3 Variables 200 5.4 The Concept of Binding 203 5.5 Scope 211 5.6 Scope and Lifetime 222 5.7 Referencing Environments 223 5.8 Named Constants 224 Summary • Review Questions • Problem Set • Programming Exercises 227 CMPS401 Class Notes (Chap05) Page 1 / 20 Dr. Kuo-pao Yang Chapter 5 Names, Bindings, and Scopes 5.1 Introduction 198 Imperative languages are abstractions of von Neumann architecture – Memory: stores both instructions and data – Processor: provides operations for modifying the contents of memory Variables are characterized by a collection of properties or attributes – The most important of which is type, a fundamental concept in programming languages – To design a type, must consider scope, lifetime, type checking, initialization, and type compatibility 5.2 Names 199 5.2.1 Design issues The following are the primary design issues for names: – Maximum length? – Are names case sensitive? – Are special words reserved words or keywords? 5.2.2 Name Forms A name is a string of characters used to identify some entity in a program. Length – If too short, they cannot be connotative – Language examples: . FORTRAN I: maximum 6 . COBOL: maximum 30 . C99: no limit but only the first 63 are significant; also, external names are limited to a maximum of 31 . C# and Java: no limit, and all characters are significant . C++: no limit, but implementers often impose a length limitation because they do not want the symbol table in which identifiers are stored during compilation to be too large and also to simplify the maintenance of that table. -
Gotcha Again More Subtleties in the Verilog and Systemverilog Standards That Every Engineer Should Know
Gotcha Again More Subtleties in the Verilog and SystemVerilog Standards That Every Engineer Should Know Stuart Sutherland Sutherland HDL, Inc. [email protected] Don Mills LCDM Engineering [email protected] Chris Spear Synopsys, Inc. [email protected] ABSTRACT The definition of gotcha is: “A misfeature of....a programming language...that tends to breed bugs or mistakes because it is both enticingly easy to invoke and completely unexpected and/or unreasonable in its outcome. A classic gotcha in C is the fact that ‘if (a=b) {code;}’ is syntactically valid and sometimes even correct. It puts the value of b into a and then executes code if a is non-zero. What the programmer probably meant was ‘if (a==b) {code;}’, which executes code if a and b are equal.” (http://www.hyperdictionary.com/computing/gotcha). This paper documents 38 gotchas when using the Verilog and SystemVerilog languages. Some of these gotchas are obvious, and some are very subtle. The goal of this paper is to reveal many of the mysteries of Verilog and SystemVerilog, and help engineers understand the important underlying rules of the Verilog and SystemVerilog languages. The paper is a continuation of a paper entitled “Standard Gotchas: Subtleties in the Verilog and SystemVerilog Standards That Every Engineer Should Know” that was presented at the Boston 2006 SNUG conference [1]. SNUG San Jose 2007 1 More Gotchas in Verilog and SystemVerilog Table of Contents 1.0 Introduction ............................................................................................................................3 2.0 Design modeling gotchas .......................................................................................................4 2.1 Overlapped decision statements ................................................................................... 4 2.2 Inappropriate use of unique case statements ............................................................... -
Advanced Practical Programming for Scientists
Advanced practical Programming for Scientists Thorsten Koch Zuse Institute Berlin TU Berlin SS2017 The Zen of Python, by Tim Peters (part 1) ▶︎ Beautiful is better than ugly. ▶︎ Explicit is better than implicit. ▶︎ Simple is better than complex. ▶︎ Complex is better than complicated. ▶︎ Flat is better than nested. ▶︎ Sparse is better than dense. ▶︎ Readability counts. ▶︎ Special cases aren't special enough to break the rules. ▶︎ Although practicality beats purity. ▶︎ Errors should never pass silently. ▶︎ Unless explicitly silenced. ▶︎ In the face of ambiguity, refuse the temptation to guess. Advanced Programming 78 Ex1 again • Remember: store the data and compute the geometric mean on this stored data. • If it is not obvious how to compile your program, add a REAME file or a comment at the beginning • It should run as ex1 filenname • If you need to start something (python, python3, ...) provide an executable script named ex1 which calls your program, e.g. #/bin/bash python3 ex1.py $1 • Compare the number of valid values. If you have a lower number, you are missing something. If you have a higher number, send me the wrong line I am missing. File: ex1-100.dat with 100001235 lines Valid values Loc0: 50004466 with GeoMean: 36.781736 Valid values Loc1: 49994581 with GeoMean: 36.782583 Advanced Programming 79 Exercise 1: File Format (more detail) Each line should consists of • a sequence-number, • a location (1 or 2), and • a floating point value > 0. Empty lines are allowed. Comments can start a ”#”. Anything including and after “#” on a line should be ignored. -
Sensitivity Training for Prxers Kenneth W
PharmaSUG 2015 – QT29 Sensitivity Training for PRXers Kenneth W. Borowiak, PPD, Morrisville, NC ABSTRACT Any SAS® user who intends to use the Perl style regular expressions through the PRX family of functions and call routines should be required to go through sensitivity training. Is this because those who use PRX are mean and rude? Nay, but the regular expressions they write are case sensitive by default. This paper discusses the various ways to flip the case sensitivity switch for the entire or part of the regular expression, which can aid in making it more readable and succinct. Keywords: case sensitivity, alternation, character classes, modifiers, mode modified span INTRODUCTION Any SAS® user who intends to use the Perl style regular expressions through the PRX family of functions and call routines should be required to go through sensitivity training. Is this because those who use PRX are mean and rude? Nay, but the regular expressions they write are case sensitive by default. Before proceeding with an example, it will be assumed that the reader has at least some previous exposure to regular expressions1. Now consider the two queries below in Figure 1 against the CHARACTERS data set for the abbreviation for ‘mister’ at the beginning of the free-text captured field NAME. Figure 1 Case Sensitivity of Regular Expressions data characters ; input name $40. ; datalines ; Though the two MR Bigglesworth regexen below Mini-mr bigglesworth look similar … Mr. Austin D. Powers dr evil mr bIgglesWorTH ; proc print data=characters ; proc print data=characters ; where prxmatch('/^MR/', name) ; where prxmatch('/^Mr/', name); run ; run ; Obs name … they generate Obs name 1 MR Bigglesworth different results 3 Mr. -
Systemverilog Testbench Constructs VCS®/Vcsi™Version X-2005.06 LCA August 2005
SystemVerilog Testbench Constructs VCS®/VCSi™Version X-2005.06 LCA August 2005 The SystemVerilog features of the Native Testbench technology in VCS documented here are currently available to customers as a part of an Limited Access program. Using these features requires additional LCA license features. Please contact you local Synopsys AC for more details. Comments? E-mail your comments about this manual to [email protected]. Copyright Notice and Proprietary Information Copyright 2005 Synopsys, Inc. All rights reserved. This software and documentation contain confidential and proprietary information that is the property of Synopsys, Inc. The software and documentation are furnished under a license agreement and may be used or copied only in accordance with the terms of the license agreement. No part of the software and documentation may be reproduced, transmitted, or translated, in any form or by any means, electronic, mechanical, manual, optical, or otherwise, without prior written permission of Synopsys, Inc., or as expressly provided by the license agreement. Destination Control Statement All technical data contained in this publication is subject to the export control laws of the United States of America. Disclosure to nationals of other countries contrary to United States law is prohibited. It is the reader’s responsibility to determine the applicable regulations and to comply with them. Disclaimer SYNOPSYS, INC., AND ITS LICENSORS MAKE NO WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, WITH REGARD TO THIS MATERIAL, INCLUDING, -
Usability Improvements for Products That Mandate Use of Command-Line Interface: Best Practices
Usability improvements for products that mandate use of command-line interface: Best Practices Samrat Dutta M.Tech, International Institute of Information Technology, Electronics City, Bangalore Software Engineer, IBM Storage Labs, Pune [email protected] ABSTRACT This paper provides few methods to improve the usability of products which mandate the use of command-line interface. At present many products make command-line interfaces compulsory for performing some operations. In such environments, usability of the product becomes the link that binds the users with the product. This paper provides few mechanisms like consolidated hierarchical help structure for the complete product, auto-complete command-line features, intelligent command suggestions. These can be formalized as a pattern and can be used by software companies to embed into their product's command-line interfaces, to simplify its usability and provide a better experience for users so that they can adapt with the product much faster. INTRODUCTION Products that are designed around a command-line interface (CLI), often strive for usability issues. A blank prompt with a cursor blinking, waiting for input, does not provide much information about the functions and possibilities available. With no click-able option and hover over facility to view snippets, some users feel lost. All inputs being commands, to learn and gain expertise of all of them takes time. Considering that learning a single letter for each command (often the first letter of the command is used instead of the complete command to reduce stress) is not that difficult, but all this seems useless when the command itself is not known. -
Software II: Principles of Programming Languages Introduction
Software II: Principles of Programming Languages Lecture 5 – Names, Bindings, and Scopes Introduction • Imperative languages are abstractions of von Neumann architecture – Memory – Processor • Variables are characterized by attributes – To design a type, must consider scope, lifetime, type checking, initialization, and type compatibility Names • Design issues for names: – Are names case sensitive? – Are special words reserved words or keywords? Names (continued) • Length – If too short, they cannot be connotative – Language examples: • FORTRAN 95: maximum of 31 (only 6 in FORTRAN IV) • C99: no limit but only the first 63 are significant; also, external names are limited to a maximum of 31 (only 8 are significant K&R C ) • C#, Ada, and Java: no limit, and all are significant • C++: no limit, but implementers often impose one Names (continued) • Special characters – PHP: all variable names must begin with dollar signs – Perl: all variable names begin with special characters, which specify the variable’s type – Ruby: variable names that begin with @ are instance variables; those that begin with @@ are class variables Names (continued) • Case sensitivity – Disadvantage: readability (names that look alike are different) • Names in the C-based languages are case sensitive • Names in others are not • Worse in C++, Java, and C# because predefined names are mixed case (e.g. IndexOutOfBoundsException ) Names (continued) • Special words – An aid to readability; used to delimit or separate statement clauses • A keyword is a word that is special only -
Assessing the Impact of Case Sensitivity and Term Information Gain on Biomedical Concept Recognition
RESEARCH ARTICLE Assessing the Impact of Case Sensitivity and Term Information Gain on Biomedical Concept Recognition Tudor Groza1¤*, Karin Verspoor2,3 1 School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia, 2 Department of Computing and Information Systems, The University of Melbourne, Melbourne, Australia, 3 Health and Biomedical Informatics Centre, The University of Melbourne, Melbourne, Australia ¤ Current address: Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, Australia * [email protected] Abstract OPEN ACCESS Concept recognition (CR) is a foundational task in the biomedical domain. It supports the important process of transforming unstructured resources into structured knowledge. To Citation: Groza T, Verspoor K (2015) Assessing the Impact of Case Sensitivity and Term Information Gain date, several CR approaches have been proposed, most of which focus on a particular set on Biomedical Concept Recognition. PLoS ONE 10 of biomedical ontologies. Their underlying mechanisms vary from shallow natural language (3): e0119091. doi:10.1371/journal.pone.0119091 processing and dictionary lookup to specialized machine learning modules. However, no Academic Editor: Indra Neil Sarkar, University of prior approach considers the case sensitivity characteristics and the term distribution of the Vermont, UNITED STATES underlying ontology on the CR process. This article proposes a framework that models the Received: August 22, 2014 CR process as an information retrieval task in which both case sensitivity and the informa- Accepted: January 9, 2015 tion gain associated with tokens in lexical representations (e.g., term labels, synonyms) are central components of a strategy for generating term variants. The case sensitivity of a Published: March 19, 2015 given ontology is assessed based on the distribution of so-called case sensitive tokens in Copyright: © 2015 Groza, Verspoor. -
Command Interface Guide Version 2.3.0 Table of Contents
Command Interface Guide Version 2.3.0 Table of Contents 1. About This Document . 5 1.1. Intended Audience . 5 1.2. New and Changed Information . 5 1.3. Notation Conventions . 5 1.4. Comments Encouraged . 8 2. Introduction . 9 3. Install and Configure . 10 3.1. Install trafci . 10 3.2. Test trafci Launch . 10 4. Launch trafci . 11 4.1. Launch trafci on Windows Workstation . 11 4.1.1. Create trafci.cmd Shortcut . 12 4.2. Launch trafci on Linux Workstation . 16 4.2.1. Set trafci.sh PATH . 16 4.2.2. Preset the Optional Launch Parameters . 17 4.3. Log In to Database Platform . 18 4.3.1. Log In Without Login Parameters . 18 4.3.2. Use Login Parameters . 19 4.4. Retry Login . 20 4.5. Optional Launch Parameters . 23 4.6. Run Command When Launching trafci . 25 4.7. Run Script When Launching trafci . 27 4.8. Launch trafci Without Connecting to the Database . 29 4.9. Run trafci With -version . 30 4.10. Run trafci With -help . 31 4.11. Exit trafci . 31 5. Run Commands Interactively . 32 5.1. User Interface . 32 5.1.1. Product Banner . 32 5.1.2. Interface Prompt . 32 5.1.3. Break the Command Line . 32 5.1.4. Case Sensitivity . 34 5.2. Interface Commands . 35 5.2.1. Show Session Attributes . 35 5.2.2. Set and Show Session Idle Timeout Value . 36 5.2.3. Customize the Standard Prompt . 37 5.2.4. Set and Show the SQL Terminator . 38 5.2.5. -
Exercise 2: Concepts of Scripting Part 1
Last Updated: July 2017 EXERCISE 2 Concepts of Scripting, Part 1 Introduction There are a number of powerful tools available for geospatial analysis that require some knowledge of scripting, such as ArcPy, Google Earth Engine, and the R computing environment. These tools extend the power and functionality of GIS and remote sensing. This exercise provides an introduction to scripting concepts that aren’t specific to any programming language or geospatial tool but are necessary to understand to begin writing code in any environment. The exercise is designed to let you work in Python, R, or JavaScript. The numbered instructions provide information about what the commands you enter will do, and the tables give examples about what code needs to be typed in your chosen language. Objectives . Become familiar with basic concepts of scripting Required Software (Choose 1) . RStudio . Python v2.x . Google Earth Engine Account Prerequisites . Introduction to Geospatial Scripting, Exercise 1: Planning a Script Geospatial Technology and Applications Center | EXERCISE 2 | 1 Table of Contents Part 1: Variables, Statements .......................................................................................................... 3 Part 2: Operators ............................................................................................................................. 7 Part 3: Additional Resources .......................................................................................................... 10 Geospatial Technology and Applications Center -
Systemverilog 3.1A Language Reference Manual
Accellera SystemVerilog 3.1a Extensions to Verilog-2001 Section 17 Assertions 17.1 Introduction (informative) SystemVerilog adds features to specify assertions of a system. An assertion specifies a behavior of the system. Assertions are primarily used to validate the behavior of a design. In addition, assertions can be used to pro- vide functional coverage and generate input stimulus for validation. There are two kinds of assertions: concurrent and immediate. — Immediate assertions follow simulation event semantics for their execution and are executed like a state- ment in a procedural block. Immediate assertions are primarily intended to be used with simulation. — Concurrent assertions are based on clock semantics and use sampled values of variables. One of the goals of SystemVerilog assertions is to provide a common semantic meaning for assertions so that they can be used to drive various design and verification tools. Many tools, such as formal verification tools, evaluate circuit descriptions using cycle-based semantics, which typically relies on a clock signal or signals to drive the evaluation of the circuit. Any timing or event behavior between clock edges is abstracted away. Con- current assertions incorporate these clock semantics. While this approach generally simplifies the evalua- tion of a circuit description, there are a number of scenarios under which this cycle-based evaluation provides different behavior from the standard event-based evaluation of SystemVerilog. This section describes both types of assertions. 17.2 Immediate assertions The immediate assertion statement is a test of an expression performed when the statement is executed in the procedural code. The expression is non-temporal and is interpreted the same way as an expression in the con- dition of a procedural if statement.