A Checkup for the Flu Vaccine
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Technical Glossary
WBVGL 6/28/03 12:00 AM Page 409 Technical Glossary abortive infection: Infection of a cell where there is no net increase in the production of infectious virus. abortive transformation: See transitory (transient or abortive) transformation. acid blob activator: A regulatory protein that acts in trans to alter gene expression and whose activity depends on a region of an amino acid sequence containing acidic or phosphorylated residues. acquired immune deficiency syndrome (AIDS): A disease characterized by loss of cell-mediated and humoral immunity as the result of infection with human immunodeficiency virus (HIV). acute infection: An infection marked by a sudden onset of detectable symptoms usually followed by complete or apparent recovery. adaptive immunity (acquired immunity): See immunity. adjuvant: Something added to a drug to increase the effectiveness of that drug. With respect to the immune system, an adjuvant increases the response of the system to a particular antigen. agnogene: A region of a genome that contains an open reading frame of unknown function; origi- nally used to describe a 67- to 71-amino acid product from the late region of SV40. AIDS: See acquired immune deficiency syndrome. aliquot: One of a number of replicate samples of known size. a-TIF: The alpha trans-inducing factor protein of HSV; a structural (virion) protein that functions as an acid blob transcriptional activator. Its specificity requires interaction with certain host cel- lular proteins (such as Oct1) that bind to immediate-early promoter enhancers. ambisense genome: An RNA genome that contains sequence information in both the positive and negative senses. The S genomic segment of the Arenaviridae and of certain genera of the Bunyaviridae have this characteristic. -
Dissecting Human Antibody Responses Against Influenza a Viruses and Antigenic Changes That Facilitate Immune Escape
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2018 Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape Seth J. Zost University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Allergy and Immunology Commons, Immunology and Infectious Disease Commons, Medical Immunology Commons, and the Virology Commons Recommended Citation Zost, Seth J., "Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape" (2018). Publicly Accessible Penn Dissertations. 3211. https://repository.upenn.edu/edissertations/3211 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/3211 For more information, please contact [email protected]. Dissecting Human Antibody Responses Against Influenza A Viruses And Antigenic Changes That Facilitate Immune Escape Abstract Influenza A viruses pose a serious threat to public health, and seasonal circulation of influenza viruses causes substantial morbidity and mortality. Influenza viruses continuously acquire substitutions in the surface glycoproteins hemagglutinin (HA) and neuraminidase (NA). These substitutions prevent the binding of pre-existing antibodies, allowing the virus to escape population immunity in a process known as antigenic drift. Due to antigenic drift, individuals can be repeatedly infected by antigenically distinct influenza strains over the course of their life. Antigenic drift undermines the effectiveness of our seasonal influenza accinesv and our vaccine strains must be updated on an annual basis due to antigenic changes. In order to understand antigenic drift it is essential to know the sites of antibody binding as well as the substitutions that facilitate viral escape from immunity. -
Current and Novel Approaches in Influenza Management
Review Current and Novel Approaches in Influenza Management Erasmus Kotey 1,2,3 , Deimante Lukosaityte 4,5, Osbourne Quaye 1,2 , William Ampofo 3 , Gordon Awandare 1,2 and Munir Iqbal 4,* 1 West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Legon, Accra P.O. Box LG 54, Ghana; [email protected] (E.K.); [email protected] (O.Q.); [email protected] (G.A.) 2 Department of Biochemistry, Cell & Molecular Biology, University of Ghana, Legon, Accra P.O. Box LG 54, Ghana 3 Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra P.O. Box LG 581, Ghana; [email protected] 4 The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; [email protected] 5 The University of Edinburgh, Edinburgh, Scotland EH25 9RG, UK * Correspondence: [email protected] Received: 20 May 2019; Accepted: 17 June 2019; Published: 18 June 2019 Abstract: Influenza is a disease that poses a significant health burden worldwide. Vaccination is the best way to prevent influenza virus infections. However, conventional vaccines are only effective for a short period of time due to the propensity of influenza viruses to undergo antigenic drift and antigenic shift. The efficacy of these vaccines is uncertain from year-to-year due to potential mismatch between the circulating viruses and vaccine strains, and mutations arising due to egg adaptation. Subsequently, the inability to store these vaccines long-term and vaccine shortages are challenges that need to be overcome. Conventional vaccines also have variable efficacies for certain populations, including the young, old, and immunocompromised. -
Adenoviral Vector-Based Vaccine Platforms for Developing the Next Generation of Influenza Vaccines
Review Adenoviral Vector-Based Vaccine Platforms for Developing the Next Generation of Influenza Vaccines Ekramy E. Sayedahmed 1 , Ahmed Elkashif 1, Marwa Alhashimi 1, Suryaprakash Sambhara 2,* and Suresh K. Mittal 1,* 1 Department of Comparative Pathobiology, Purdue Institute for Immunology, Inflammation and Infectious Disease, Purdue University Center for Cancer Research, College of Veterinary Medicine, Purdue University, West Lafayette, IN 47907, USA; [email protected] (E.E.S.); [email protected] (A.E.); [email protected] (M.A.) 2 Influenza Division, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA * Correspondence: [email protected] (S.S.); [email protected] (S.K.M.) Received: 2 August 2020; Accepted: 17 September 2020; Published: 1 October 2020 Abstract: Ever since the discovery of vaccines, many deadly diseases have been contained worldwide, ultimately culminating in the eradication of smallpox and polio, which represented significant medical achievements in human health. However, this does not account for the threat influenza poses on public health. The currently licensed seasonal influenza vaccines primarily confer excellent strain-specific protection. In addition to the seasonal influenza viruses, the emergence and spread of avian influenza pandemic viruses such as H5N1, H7N9, H7N7, and H9N2 to humans have highlighted the urgent need to adopt a new global preparedness for an influenza pandemic. It is vital to explore new strategies for the development of effective vaccines for pandemic and seasonal influenza viruses. The new vaccine approaches should provide durable and broad protection with the capability of large-scale vaccine production within a short time. The adenoviral (Ad) vector-based vaccine platform offers a robust egg-independent production system for manufacturing large numbers of influenza vaccines inexpensively in a short timeframe. -
Through a Combination of Continual Antigenic Drift of Surface Proteins and High Transmission Rates the Identity of Circulating I
Title: Computer-assisted vaccine design Hao Zhou, Ramdas S. Pophale, and Michael W. Deem Departments of Bioengineering and Physics & Astronomy Rice University Houston, TX, USA Abstract We define a new parameter to quantify the antigenic distance between two H3N2 influenza strains: we use this parameter to measure antigenic distance between circulating H3N2 strains and the closest vaccine component of the influenza vaccine. For the data between 1971 and 2004, the measure of antigenic distance correlates better with efficacy in humans of the H3N2 influenza A annual vaccine than do current state of the art measures of antigenic distance such as phylogenetic sequence analysis or ferret antisera inhibition assays. We suggest that this measure of antigenic distance could be used to guide the design of the annual flu vaccine. We combine the measure of antigenic distance with a multiple-strain avian influenza transmission model to study the threat of simultaneous introduction of multiple avian influenza strains. For H3N2 influenza, the model is validated against observed viral fixation rates and epidemic progression rates from the World Health Organization FluNet – Global Influenza Surveillance Network. We find that a multiple-component avian influenza vaccine is helpful to control a simultaneous multiple introduction of bird-flu strains. We introduce Population at Risk (PaR) to quantify the risk of a flu pandemic, and calculate by this metric the improvement that a multiple vaccine offers. Computer-assisted vaccine design Introduction Circulating influenza virus uses the ability to change its surface proteins, along with its high transmission rate, to flummox the adaptive immune response of the host. The random accumulation of mutations in the hemagglutinin (HA) and neuraminidase (NA) epitopes, the regions on surface of the viral proteins that are recognized by host antibodies, pose a formidable challenge to the design of an effective annual flu vaccine. -
Human Antibodies Targeting a Novel Flu Epitope for Use As a Universal Flu Vaccine and Treatment
Human antibodies targeting a novel flu epitope for use as a universal flu vaccine and treatment Technology Summary Scientists at Vanderbilt have discovered a new class of human antibodies specific to a novel target for the detection, prevention, and treatment of influenza A viruses (IAV). Using structural characterization, they have identified a novel antigenic site on the hemagglutin (HA) head domain that may be targeted by multiple antibodies simultaneously in a non-competitive manner. They found that administration of these antibodies against an otherwise lethal challenge with viruses of H1N1, H3N2, H5N1, or H7N9 subtypes confers protection when used as prophylaxis or therapy against major IAV subtypes that are pathogenic to humans. These antibodies may prove effective as a universal influenza treatment or in the design of a universal influenza vaccine. Problems Addressed Influenza A viruses naturally infect humans and routinely cause mild to severe respiratory illness. IAV are also highly variable, with multiple subtypes typically circulating among humans at any one time. This inherent variability makes the development of IAV vaccines a moving target. Seasonal influenza vaccines are developed based on a prediction of which virus subtype will be most common for the season and typically only provide protection against that subtype. This can lead to severe flu seasons if the prediction is incorrect and is why current flu vaccines require annual updates. Most influenza vaccines are targeted based on the HA head domain, a viral surface protein required for attachment to host cells, which is variable among different subtypes of influenza. However, Vanderbilt scientists have identified that more universal protection against IAV is possible using antibodies targeted to a novel, highly conserved epitope on the HA head domain. -
Detection of Influenza a Viruses from Environmental Lake and Pond Ice
TITLE “DETECTION OF INFLUENZA A VIRUSES FROM ENVIRONMENTAL LAKE AND POND ICE” Zeynep A. Koçer A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY August 2010 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative John Castello George Bullerjahn Paul Morris ii ABSTRACT Scott O. Rogers, Advisor Environmental ice is an ideal matrix for the long-term protection of organisms due to the limitation of degradative processes. As a result of global climate change, some glaciers and polar ice fields are melting at rapid rates. This process releases viable microorganisms that have been embedded in the ice, sometimes for millions of years. We propose that viral pathogens have adapted to being entrapped in ice, such that they are capable of infecting naïve hosts after melting from the ice. Temporal gene flow, which has been termed genome recycling (Rogers et al., 2004), may allow pathogens to infect large host populations rapidly. Accordingly, we hypothesize that viable influenza A virions are preserved in lake and pond ice. Our main objective was to identify influenza A (H1-H16) from the ice of a few lakes and ponds in Ohio that have high numbers of migratory and local waterfowl visiting the sites. We developed a set of hemagglutinin subtype-specific primers for use in four multiplex RT-PCR reactions. Model studies were developed by seeding environmental lake water samples in vitro with influenza A viruses and subjecting the seeded water to five freeze-thaw cycles at -20oC and -80oC. -
Antigenic Variation in Vector-Borne Pathogens
Synopsis Antigenic Variation in Vector-Borne Pathogens Alan G. Barbour* and Blanca I. Restrepo† *University of California Irvine, Irvine, California; and †Corporación para Investigaciones Biológicas, Medellín, Colombia Several pathogens of humans and domestic animals depend on hematophagous arthropods to transmit them from one vertebrate reservoir host to another and maintain them in an environment. These pathogens use antigenic variation to prolong their circulation in the blood and thus increase the likelihood of transmission. By convergent evolution, bacterial and protozoal vector-borne pathogens have acquired similar genetic mechanisms for successful antigenic variation. Borrelia spp. and Anaplasma marginale (among bacteria) and African trypanosomes, Plasmodium falciparum, and Babesia bovis (among parasites) are examples of pathogens using these mechanisms. Antigenic variation poses a challenge in the development of vaccines against vector- borne pathogens. What Is Antigenic Variation? original antigen is archived in the cell and can be Immunodominant antigens are commonly used in the future. The adaptive immune system used to distinguish strains of a species of of an infected vertebrate selects against the pathogens. These antigens can vary from strain original infecting serotype, but that specific to strain to the extent that the strain-specific response is ineffective against new variants. One immune responses of vertebrate reservoirs example of antigenic variation occurs in determine the population structure of the B. hermsii, a cause of tickborne relapsing fever pathogen. One such strain-defining antigen is (4), which has a protein homologous to the OspC the OspC outer membrane protein of the Lyme protein of B. burgdorferi. However, instead of a disease spirochete Borrelia burgdorferi in the single version of this gene, each cell of B. -
Evolution and Adaptation of the Avian H7N9 Virus Into the Human Host
microorganisms Review Evolution and Adaptation of the Avian H7N9 Virus into the Human Host Andrew T. Bisset 1,* and Gerard F. Hoyne 1,2,3,4 1 School of Health Sciences, University of Notre Dame Australia, Fremantle WA 6160, Australia; [email protected] 2 Institute for Health Research, University of Notre Dame Australia, Fremantle WA 6160, Australia 3 Centre for Cell Therapy and Regenerative Medicine, School of Biomedical Sciences, The University of Western Australia, Nedlands WA 6009, Australia 4 School of Medical and Health Sciences, Edith Cowan University, Joondalup WA 6027, Australia * Correspondence: [email protected] Received: 19 April 2020; Accepted: 19 May 2020; Published: 21 May 2020 Abstract: Influenza viruses arise from animal reservoirs, and have the potential to cause pandemics. In 2013, low pathogenic novel avian influenza A(H7N9) viruses emerged in China, resulting from the reassortment of avian-origin viruses. Following evolutionary changes, highly pathogenic strains of avian influenza A(H7N9) viruses emerged in late 2016. Changes in pathogenicity and virulence of H7N9 viruses have been linked to potential mutations in the viral glycoproteins hemagglutinin (HA) and neuraminidase (NA), as well as the viral polymerase basic protein 2 (PB2). Recognizing that effective viral transmission of the influenza A virus (IAV) between humans requires efficient attachment to the upper respiratory tract and replication through the viral polymerase complex, experimental evidence demonstrates the potential H7N9 has for increased binding affinity and replication, following specific amino acid substitutions in HA and PB2. Additionally, the deletion of extended amino acid sequences in the NA stalk length was shown to produce a significant increase in pathogenicity in mice. -
Recitation 21 – Fall 2018 (Note: the Recitation Summary Should NOT Be Regarded As the Substitute for Lectures) (This Material Is COPYRIGHT Protected.)
7.016: Fall 2018: MIT 7.016 Recitation 21 – Fall 2018 (Note: The recitation summary should NOT be regarded as the substitute for lectures) (This material is COPYRIGHT protected.) Summary of Lectures 32 (12/3) & 33 (12/5): Viruses: Viruses are obligate intracellular parasites. They consist of a protein coat (capsid) surrounding a genome, which encodes for proteins. These may include structural or coat proteins, other proteins necessary to get inside the host cell and make copies of the viral genome and the proteins that provide the virus with the anti–host defense system. Non-enveloped/ naked viruses do not have a lipid bilayer surrounding their capsid. They typically dock onto a protein on the surface of the target cells and inject their genomes into the host. Enveloped viruses have a lipid bilayer. They fuse their own membrane with the host membrane, such that the entire viral particle is endocytosed into the host cell. Once a virus is inside its host, it takes over the host machinery and uses it to make coat proteins and viral genomes. The genomes are then packaged into the coats and the new viral particles escape from the host cell either by lysing the cell or budding off from the cell. Viral genomes can be composed of either DNA or RNA. They can be single-stranded or double- stranded. There are two types of single stranded RNA viruses: plus (+) stranded or minus (-) stranded. The plus (+) stranded RNA genome can be directly read and translated by the host cell translation machinery. So these viruses bring only their genome, with no additional proteins, into the host cells at the time of infection. -
Perspectives
PERSPECTIVES in humans. In the 1957 H2N2-SUBTYPE pan- OPINION demic virus, both influenza surface proteins, HA and neuraminidase (NA), and one inter- nal protein, polymerase B1 (PB1), were Evidence of an absence: closely related to Eurasian wild waterfowl influenza proteins6,7.In 1968, the H3N2 pan- the genetic origins of the 1918 demic virus contained novel HA and PB1 proteins, also apparently of Eurasian wild waterfowl origin7,8.Although it is not known pandemic influenza virus exactly how these reassortant viruses were generated, pigs can be infected with both Ann H. Reid, Jeffery K. Taubenberger and Thomas G. Fanning avian and human influenza strains and this species has been suggested as a potential ‘mix- Abstract | Annual outbreaks of influenza A (HA) protein on the virus surface can greatly ing vessel’ for the generation of pandemic infection are an ongoing public health threat reduce the effectiveness of existing antibodies, viruses2,9. and novel influenza strains can periodically leaving people vulnerable to repeated influenza In 1918, the most devastating influenza emerge to which humans have little immunity, infections throughout their lives. In addition pandemic in history killed at least 40 million resulting in devastating pandemics. The 1918 to this gradual change in the influenza virus, people10,11.In addition to a death toll that is pandemic killed at least 40 million people which is known as ANTIGENIC DRIFT, influenza A several times higher than that of other worldwide and pandemics in 1957 and 1968 viruses can acquire novel surface proteins influenza pandemics, the 1918 H1N1 virus caused hundreds of thousands of deaths. -
Flu Universal Vaccines: New Tricks on an Old Virus
Virologica Sinica (2021) 36:13–24 www.virosin.org https://doi.org/10.1007/s12250-020-00283-6 www.springer.com/12250 (0123456789().,-volV)(0123456789().,-volV) REVIEW Flu Universal Vaccines: New Tricks on an Old Virus 1,2,3 1,2,3 4 Ruikun Du • Qinghua Cui • Lijun Rong Received: 6 June 2020 / Accepted: 5 August 2020 / Published online: 1 September 2020 Ó Wuhan Institute of Virology, CAS 2020 Abstract Conventional influenza vaccines are based on predicting the circulating viruses year by year, conferring limited effec- tiveness since the antigenicity of vaccine strains does not always match the circulating viruses. This necessitates devel- opment of universal influenza vaccines that provide broader and lasting protection against pan-influenza viruses. The discovery of the highly conserved immunogens (epitopes) of influenza viruses provides attractive targets for universal vaccine design. Here we review the current understanding with broadly protective immunogens (epitopes) and discuss several important considerations to achieve the goal of universal influenza vaccines. Keywords Influenza virus Á Universal vaccine Á Conserved epitopes Á Broadly protection Introduction morbidity and mortality, as well as potential pandemic risk (Krammer et al. 2018; WHO 2018). More than 100 years past the catastrophic 1918 Spanish Vaccines provide cost-effective protection against influenza pandemic, influenza viruses remain a constant influenza. Currently, seasonal influenza virus vaccines global health threat. Three types of influenza viruses infect predominantly induce antibody responses against the humans: type A (influenza A virus, IAV), type B (IBV) and hemagglutinin (HA), one of the two major surface glyco- type C (ICV). Two IAV subtypes (H3N2 and H1N1pdm09) proteins of the virus (Krammer 2019).