© 2008 The Japan Mendel Society Cytologia 73(2): 179–188, 2008
Assessment of Genetic Diversity and Phylogenetic analysis of ‘Star Cactus’ (Astrophytum) Through Chromosome and RAPD Markers
Anath Bandhu Das*
Cytogenetics Laboratory, Regional Plant Resource Centre, Nayapalli, Bhubaneswar 751015, Orissa, India
Received April 7, 2008; Accepted June 17, 2008
Summary Interspecific variation and molecular phylogenetic analysis among the four species of Astrophytum i.e. A. asterias, A. capricorne, A. myriostigma and A. ornatum of the family Cactaceae were studied using cytological and molecular markers. In all the four species, the somatic chromo- somes found were 2n 22. Though they showed a high level of similarity in the number of chromo- somes, karyotype analysis revealed species-specific chromosomal characteristics. The total chromo- some length varied from 53.05 mm in A. aterias to 60.12 mm in A. capricorne. The chromosome vol- ume varied from 41.82 mm3 in A. ornatum to 61.65 mm3 in A. myriostigma. The centromeric index (TF %) among the four species varied from 35.93% in A. myriostigma to 45.25% in A. capricorne. The symmetrical karyotype with same number of secondary constricted chromosomes in A. asterias & A. myriostigma suggests their close affinity between them. The 4C DNA contents were varied sig- nificantly from 8.95 pg in A. aterias to 10.23 pg in A. capricorne. The amplification products in PCR generated RAPD analysis of the four species, revealed a total of 315 bands with fragment size rang- ing from 0.21 kb to 3.1 kb that showed high correlation of A. asterias with A. aterias and A. capri- corne with A. ornatum that were also confirmed from the karyotype analysis. Analysis of the nuclear DNA content showed significant variation in the amount of 4C DNA between the three species. The correlation coefficients showed the various chromosomal and nuclear parameters were interdepen- dent to some extent suggesting interspecific relationship between structural and molecular changes of the genome architecture during evolution of speciation.
Key words Cactus, Astrophytum, Chromosome number, Karyotype, Nuclear DNA, RAPD analy- sis.
Astrophytum, a small group of cacti from Texas and the Eastern part of Mexico with only four species, are two with spines and two without (Schuster 1990). They are with moderate sized spheri- cal to slightly elongated succulent plant body most easily distinguished by the presence of white flakes on the body surface and their relatively few, sharply defined ribs. Their perfect symmetry along with their ornamental appearance is responsible for their popularity in every succulent collec- tion. Astrophytums are lovingly called Bishop’s cap or star cactus due to the prominent wings and ribs, which give a star like appearance. Their striking forms are further enhanced by the most beau- tiful flowers, borne singly or in masses in various shades of yellow, sometimes with a red center during the entire summer season. Interspecific variations were also prominent in number and struc- ture of aerioles, flower colour and size. Propagation of these plants through seeds or cuttings has been carried out extensively in our centre to cope with the increased demand for the production of large number of plants of this horti- cultural important species of Astrophytum. But the production of these plants through seed germi- nation is not suitable mainly due to the low percentage of germination and long germination time.
* Corresponding author, e-mail: [email protected]. 180 Das A. B. Cytologia 73(2)
Growth of these plants through rooted cuttings or shoot budding is highly variable and the main ob- jective was to analyze and evaluate its variability and collection of these genotypes to enlarge the genetic basis of this plant. The level of polymorphism for morphological characteristics in geno- types is inadequate to allow varietals identification. Therefore, chromosome and DNA markers were involved to characterize its phenotypic variability. The present study deals the karyotype analysis and nuclear DNA content to discriminate species specific differences in chromosomes and their ancestry during the process of evolution and to ascertain precisely the importance of DNA in genetic diversity and phylogeny in four species of Astrophytum. Randomly Amplified polymorphic DNA analysis was carried out in these four species using 19 random primers to find out the variability in the amplified products of genomic DNA to establish phylogenetic relationships and affinities and to identify the molecular markers, if any. The morphological parameters of the plant, their spine and flower characteristics has also studied to de- lineate characters for identification and their comparative analysis.
Materials and methods Plant samples for this study were collected from the experimental cactus garden of Regional Plant Resource Centre, Bhubaneswar where above 1000 varieties were maintained collected from different parts of the world.
Morphological analysis Morphological characteristics were evaluated through plant descriptors including number of ribs, presence or absence of areoles and spines, spine characteristics and colour of the flower.
Karyotype analysis For the chromosome study, fresh healthy root-tips were pretreated in 0.02 M hydroxyquinoline for 3 h at 14°C followed by overnight fixation in 1 : 3 propionic alcohol. The root-tips were stained in 2% propionic orcein after cold hydrolysis in 5 N HCl for 5 min and were squashed in 45% propi- onic acid. Ten well-scattered metaphase plates were selected for karyotype analysis of each species. Form percentage (F%) of individual chromosomes was calculated and the total form percentage (F%) was the average of sum total F% of a karyotype (Das and Mallick 1993). Mean values of total genomic chromosome length and total chromosome volume with standard errors were calculated.
4C nuclear DNA content For Feulgen cytophotometric estimation of 4C DNA content, fixed root-tips from each species were stained in Schiff’s reagent for 2h at 14°C and scorings were made from each slide using Nikon Optiphot microscope fitted with a microspectrophotometer using monochromatic light at 550 nm following the method of Sharma and Sharma (1980). In situ DNA were obtained on the basis of optical density, which was converted to picograms (pg) using Vant Hof’s (1965) 4C nuclear DNA values (67.1 pg) for Allium cepa var. Deshi as a standard.
RAPD analysis Genomic DNA was isolated from young plants using the method of Saghai-Maroof et al. (1994) using extraction buffer containing EDTA (20 mM), Tris-HCl (100 mM), NaCl (1.5 M), CTAB (2%), b-mercaptoethanol (1%) and the DNA concentration was estimated using Versafluor TM Fluorometer (Bio-Rad, USA) using Hoechst 33258 as the fluorimetric dye. The DNA was dilut- 1 ed to a final concentration of 25 ng ml using T10E1 buffer, using as template for RAPD analysis. Polymerase chain reaction (PCR) following the standard protocol of Williams et al. (1990) was performed in a PCR amplification reaction mixture containing 25 ng of template DNA, 200 mM 2008 Assessment of Genetic Diversity and Phylogenetic analysis 181
Figs. 5–8. Diploid somatic chromosome counts in the four species of Astrophytum; A. asterias (2n 22), A. capricorne (2n 22), A. myriostigma (2n 22) and A. ornatum (2n 22) respective- ly.
each dNTP, 25ng primer, 0.5 unit Taq DNA Polymerase (Bangalore Genei Pvt. Ltd., Ban- galore, India) in a GeneAmp PCR 2400 ther- mal cycler (Perkin Elmer, USA) programmed Figs 1–4. Four species of Astrophytum as distinguished from their morphological features; 1, A. aster- for 45 cycles. The amplified products were ias; 2, A. capricorne; 3, A. myriostigma; 4, A. separated by electrophoresis in 1.5% agarose ornatum respectively. gel in 1 TAE buffer at 60 V using Gene Ruler 100 bp DNA ladder plus (MBI Ferman- tas, Lithuania) as the marker DNA. The image with the DNA fragments was captured in an image analyzer Gel Doc-G 700 (Bio Rad, USA) for documentation and data analysis.
Statistical analysis chromosome and nuclear DNA analysis Mean values of total genomic chromosome length and volume with standard error were calcu- lated. The correlation coefficient analysis between different chromosomal parameters was done to find out the genomic characteristics. The ANOVAs were performed (Sokal and Rohlf 1973) among the nuclear DNA values following Duncan’s multiple range test (Harter 1960).
RAPD data analysis In RAPD analysis, the presence or absence of the bands was taken into consideration and the difference in the intensity of the band was ignored. From RAPD data a similarity matrix was ob- tained using the Jaccard’s coefficient. From this matrix a phylogenetic dendrogram was obtained by cluster analysis following the neighbourjoining method using NTSYS version 1.7, Exeter Software, New York, USA.
Results Morphological characteristics Phenotypic observation of the 4 species indicated variations among them in the shape of the plants, margin of the ribs, colour and texture of the plant surface, spine and flower characteristics as compared to the original. In general, A. aterias (Zucc.) Lemaire is the smallest sized globular cac- tus with 8–9 flattened ribs of dull gray-green colour with varying amount of white flakes all over the plants body (Fig. 1). In the middle surface of each rib present a vertical row of circular, raised, gray-white wooly areoles. Its flowers are yellow with a red centre, start appearing on plants only 182 Das A. B. Cytologia 73(2) 0.11 0.15 0.23 0.12 SE) SE) (% 0.98 41.87 2.131.09 45.25 35.93 4.25 36.91 3 m
m
ome volume; INV: Interphase nuclear vol- INV: ome volume; Fig. 5a–8a. Idiograms representing comparative kary- otypes in the species of Astrophytum; 5a, A. asterias; 6a, A. capricorne; 7a, A. myriostig-
SE) ( ma and 8a, A. ornatum respectively. 0.008 781 0.0060.012 625 862 0.005 598 Astrophytum SE) content (pg 0.181 9.98 0.340.23 10.23 9.12 0.96 8.95 Fig. 9. Standard types of chromosomes found in Astro-
3 phytum species. m
m
when 2–3 yr. old throughout the summer. 1.06 48.12 1.091.93 50.51 61.65 2.15 57.52 SE) ( A.capricorne (A. Dietr.) Britt et Rose. is TCL DNA INV TCV 4C TF% m globular becoming elongated with age, having m 6–7 narrowly pointed ribs densely covered with white scales giving a mealy appearance (Fig. 2). On the margin of the ribs present a
NSC vertical row of areoles being covered with
Comparative cytological parameters in four species of cytological Comparative large number of flexible spines bent upward.
4D 4 60.76 Flowering is profuse and throughout summer. A. myriostigma Lemaire. is five-ribbed 4D 6 54.65 2D 6 53.05 2D 4 60.12 14C Table 1.