Intermediate Python: Using Numpy, Scipy and Matplotlib

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Intermediate Python: Using Numpy, Scipy and Matplotlib Intermediate Python: Using NumPy, SciPy and Matplotlib Lesson 19 – Odds and Ends 1 Lambda Operator • Python also has a simple way of defining a one-line function. • These are created using the Lambda operator. • The code must be a single, valid Python statement. • Looping, if-then constructs, and other control statements cannot be use in Lambdas. >>> bar = lambda x,y: x + y >>> bar(2,3) 5 >>> cube_volume = lambda l, w, h: l*w*h >>> cube_volume(2, 4.5, 7) 63.0 2 Physical Constants • The scipy.constants module contains many physical constants! 3 Physical Constants R molar gas constant c speed of light in vacuum alpha fine-structure constant mu_0 the magnetic constant N_A Avogadro constant the electric constant (vacuum epsilon_0 k Boltzmann constant permittivity), sigma Stefan-Boltzmann constant h the Planck constant hbar the Planck constant divided by 2. Wien Wien displacement law constant Rydberg Rydberg constant G Newtonian constant of gravitation m_e electron mass g standard acceleration of gravity m_p proton mass m_n neutron mass e elementary charge Always verify that they are in the correct units!!! 4 Examples >>> import scipy.constants as sc >>> sc.R >>> sc.c 8.3144621 299792458.0 >>> sc.N_A >>> sc.h 6.02214129e+23 6.62606957e-34 >>> sc.k >>> sc.G 1.3806488e-23 6.67384e-11 >>> sc.sigma >>> sc.g 9.80665 5.670373e-08 >>> sc.e >>> sc.m_e 1.602176565e-19 9.10938291e-31 5 Constants Database • There are more constants in the constants database. • These are accecces using dictionary keys. • The methods available are: – value() # the value of the constant – unit() # the units of the contant – precision() # the precision of the constant • To see a list of available constants, go to: http://docs.scipy.org/doc/scipy/reference/constants.html# module-scipy.constants 6 Constants Database Example >>> sc.value('Rydberg constant') 10973731.568539 >>> sc.unit('Rydberg constant') 'm^-1' >>> sc.precision('Rydberg constant') 5.011968778030033e-12 7 Metric Prefixes >>> sc.yotta 1e+24 >>> sc.mega 1000000.0 >>> sc.nano 1e-09 8 Conversions • There are conversion factors to MKS units. >>> sc.gram 0.001 >>> sc.gallon >>> sc.lb 0.0037854117839999997 0.45359236999999997 >>> sc.mph >>> sc.mile 0.44703999999999994 1609.3439999999998 >>> sc.knot >>> sc.foot 0.5144444444444445 0.30479999999999996 >>> sc.atm >>> sc.erg 101325.0 1e-07 >>> sc.psi >>> sc.Btu 6894.757293168361 1055.05585262 9 Temperature Conversions zero_Celsius zero of Celsius scale in Kelvin degree_Fahrenheit one degree Fahrenheit difference in Kelvin C2K(C) Convert Celsius to Kelvin K2C(K) Convert Kelvin to Celsius F2C(F) Convert Fahrenheit to Celsius C2F(C) Convert Celsius to Fahrenheit F2K(F) Convert Fahrenheit to Kelvin K2F(K) Convert Kelvin to Fahrenheit 10 Special Functions • The scipy.special module contains many special functions, such as Bessel functions, Legendre Polynomials, etc. 11 Interpolation • The scipy.interpolate module contains functions for interpolating 1D and 2D data. 12 scipy.interpolate.interp1d() • This function takes an array of x values and an array of y values, and then returns a function. By passing an x value to the function the function returns the interpolated y value. • It uses linear interpolation as the default, but also can use other forms of interpolation including cubic splines or higher-order splines. 13 interp1d() Example from scipy.interpolate import interp1d import numpy as np import matplotlib.pyplot as plt x = np.arange(0, 10) y = np.array([3.0, -4.0, -2.0, -1.0, 3.0, 6.0, 10.0, 8.0, 12.0, 20.0]) f = interp1d(x, y, kind = 'cubic') Cubic Spline xint = 3.5 yint = f(xint) Interpolated Point plt.plot(x, y, 'o', c = 'b') plt.plot(xint, yint, 's', c = 'r') plt.show() 14 Results Interpolated Point 15 interp1d() Example from scipy.interpolate import interp1d import numpy as np import matplotlib.pyplot as plt x = np.arange(0, 10) y = np.array([3.0, -4.0, -2.0, -1.0, 3.0, 6.0, 10.0, 8.0, 12.0, 20.0]) f = interp1d(x, y, kind = 'cubic') Cubic Spline xint = np.arange(0, 9.01, 0.01) yint = f(xint) Interpolated Points plt.plot(x, y, 'o', c = 'b') plt.plot(xint, yint, '-r') plt.show() 16 Results Interpolated Curve 17 scipy.interpolate.interp2d() • This function works similarly to interp1d(), but can interpolate values on a 2D grid. • The input values can be either regularly spaced, or irregularly spaced. 18 Numerical Differentiation • scipy.misc.derivative(f, x, dx=dx, n = n) is a function to find the nth derivative of a function f. • The function can either be a lambda or a user defined function. 19 Derivatives Example from scipy.misc import derivative import numpy as np f = lambda x : np.exp(-x)*np.sin(x) import matplotlib.pyplot as plt …… x = np.arange(0,10, 0.1) fig, ax = plt.subplots(3,1,sharex = True) first = derivative(f,x,dx=1,n=1) ax[0].plot(x,f(x)) second = derivative(f,x,dx=1,n=2) ax[0].set_ylabel(r'$f(x)$') ax[1].plot(x,first) ax[1].set_ylabel(r'$f\/\prime(x)$') ax[2].plot(x,second) ax[2].set_ylabel(r'$f\/\prime\prime(x)$') ax[2].set_xlabel(r'$x$') plt.show() 20 Derivatives Results 21 Numerical Integration • scipy.integrate is a module that contains functions for integration. • Integration can be performed on a function defined by a lambda. • Integration can also be performed given an array of y values. 22 Numerical Integration • scipy.integrate is a module that contains functions for integration. • Integration can be performed on a function defined by a lambda. • Integration can also be performed given an array of y values. 23 Integration Example • Suppose we want to evaluate the integral. 2 ex sin xdx 0 24 Integration Example >>> import scipy.integrate as integrate >>> import numpy as np >>> f = lambda x : np.exp(-x)*np.sin(x) >>> I = integrate.quad(f, 0, 2*np.pi) >>> print(I) (0.49906627863414593, 6.023731631928322e-15) Value of integral. Estimate of absolute error. 25 Can Even Do Infinite Bounds • Suppose we want to evaluate the integral. ex sin xdx 0 26 Infinite Integration Example >>> I = integrate.quad(f, 0, float('inf')) >>> print(I) (0.5000000000000002, 1.4875911858955308e-08) Note: The exact value of the integral is 0.5. 27 Double and Triple Integrals • There are also functions for doing double and triple integrals. 28 Integration of Array Data • If you only have an array of y values, without knowing the functional dependence of x and y, you can still integrate. • For this, use the scipy.integrate.simps() function, which uses Simpson’s rule. • You can either specify the x values, or just give the x increment, dx. 29 Example of Cumulative Integration import scipy.integrate as integrate import numpy as np x = np.arange(0, 20, 2) y = np.array([0, 3, 5, 2, 8, 9, 0, -3, 4, 9], dtype = float) I = integrate.simps(y,x) print(I) • Note that I is an array with one less element than y. 30 .
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