rtoatra lse ae xadd n h rsetv pe hr pyu sie sb=ust fmfml; n=nutrd icicra; mar=marine; inc=incertae; unc=uncultured; fam=family; subs=subset; slice. phylum chart pie respective the gr=group. on expanded represented. are are samples of 10% classes least at in 2% Proteobacteria > abundance relative with families and sample one least at in 0.5% > abundance relative with Phyla sites. S1 figure Supplementary Sediment samples

Aquaculture site Control site A Marinimicrobia_SAR406clade Latescibacteria Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Cyanobacteria Chloroflexi Chlamydiae Bacteroidetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Other_Phyla Bacteria;Other Other_Phyla Bacteria;Other WS6 Other_Phyla Bacteria;Other WS6 Verrucomicrobia Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes Bacteria;Other WS6 Verrucomicrobia TenericutesTM6_Dependentiae WS6 VerrucomicrobiaTenericutesTM6_Dependentiae Spirochaetae VerrucomicrobiaTenericutesTM6_Dependentiae Spirochaetae Saccharibacteria TenericutesTM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes ChloroflexiChlorobi Chlamydiae Bacteroidetes Armatimonadetes ChlorobiChlamydiae Bacteroidetes Armatimonadetes Aminicenantes Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Armatimonadetes Bacteroidetes Aminicenantes Actinobacteria Acidobacteria Aminicenantes Armatimonadetes Actinobacteria Acidobacteria Actinobacteria Aminicenantes Acidobacteria Acidobacteria Actinobacteria Acidobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria - Pie charts summarizing the phylum (A) and family (B) level microbiota composition of sediment samples in the two sampling two the in samples sediment of composition microbiota level (B) family and (A) phylum the summarizing charts Pie - Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Subclasses Phyla Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Epsilonproteobacteria Betaproteobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Other_phyla Bacteria;other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria Proteobacteria Planctomycetes Parcubacteria Nitrospirae Other_Phyla Other_Phyla Bacteria;Other Bacteria;Other WS6 WS6 Verrucomicrobia Verrucomicrobia Tenericutes TenericutesTM6_Dependentiae TM6_Dependentiae Spirochaetae Spirochaetae Saccharibacteria Saccharibacteria SBR1093 SBR1093 Proteobacteria Proteobacteria Planctomycetes Planctomycetes Parcubacteria Parcubacteria Nitrospirae Nitrospirae Marinimicrobia_SAR406clade Marinimicrobia_SAR406clade Latescibacteria Latescibacteria Hydrogenedentes Hydrogenedentes Gracilibacteria Gracilibacteria Gemmatimonadetes Gemmatimonadetes Fusobacteria Fusobacteria Firmicutes Firmicutes Deinococcus-Thermus Deinococcus-Thermus Cyanobacteria Cyanobacteria Chloroflexi Chloroflexi Chlorobi Chlorobi Chlamydiae Chlamydiae Bacteroidetes Bacteroidetes Armatimonadetes Armatimonadetes Aminicenantes Aminicenantes Actinobacteria Actinobacteria Acidobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria B Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Bacillaceae Cyanobacteria;subsI;famI Caldilineaceae Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Other_families Spirochaetaceae VerrucomicrobiaceaeGammaproteobacteria;other Verrucomicrobiales;DEV007Xanthomonadaceae Chthoniobacterales;other JTB255mar_benthic_gr Verrucomicrobia;OPB35_soil_gr;uncVibrionaceae Mycoplasmataceae Pseudomonadaceae SpirochaetaceaeMoraxellaceae Gammaproteobacteria;otherPasteurellaceae Xanthomonadaceae Halomonadaceae JTB255mar_benthic_gr Enterobacteriaceae VibrionaceaeChromatiaceae Pseudomonadaceae Alteromonadales;other Moraxellaceae Shewanellaceae PasteurellaceaePseudoalteromonadaceae Halomonadaceae Helicobacteraceae EnterobacteriaceaeDeltaproteobacteria;NB1-j;unc ChromatiaceaeDesulfobulbaceae Alteromonadales;otherNeisseriaceae Shewanellaceae Oxalobacteraceae PseudoalteromonadaceaeComamonadaceae Helicobacteraceae Alphaproteobacteria;other Deltaproteobacteria;NB1-j;uncSphingomonadaceae Desulfobulbaceae Alphaproteobacteria;SAR11clade;Surface1 Neisseriaceae Rickettsiales;SAR116clade Oxalobacteraceae Rhodospirillales;other Comamonadaceae Rhodospirillales_inc_sedis Alphaproteobacteria;otherRhodospirillaceae Sphingomonadaceae Acetobacteraceae Alphaproteobacteria;SAR11clade;Surface1Rhodobacteraceae Rickettsiales;SAR116clade Rhizobiales;other Rhodospirillales;other Rhodobiaceae Rhodospirillales_inc_sedis Rhizobiaceae Rhodospirillaceae Phyllobacteriaceae Acetobacteraceae Rhizobiales;MNG7 Rhodobacteraceae Hyphomicrobiaceae Rhizobiales;other Bradyrhizobiaceae Rhodobiaceae Planctomycetaceae Rhizobiaceae Nitrospiraceae Phyllobacteriaceae Fusobacteriaceae Rhizobiales;MNG7 Veillonellaceae HyphomicrobiaceaeErysipelotrichaceae Bradyrhizobiaceae Clostridiales;other Planctomycetaceae Peptostreptococcaceae NitrospiraceaeLachnospiraceae Fusobacteriaceae Clostridiales;famXII VeillonellaceaeClostridiales;famXI Erysipelotrichaceae Clostridiaceae1 Clostridiales;other Streptococcaceae PeptostreptococcaceaeLactobacillaceae Lachnospiraceae Enterococcaceae Clostridiales;famXII Carnobacteriaceae Clostridiales;famXI Staphylococcaceae Clostridiaceae1 Bacillales;famXI StreptococcaceaeBacillaceae Lactobacillaceae Obscuribacterales;unc EnterococcaceaeCyanobacteria;subsIII;famI Carnobacteriaceae Cyanobacteria;subsII;famII Staphylococcaceae Cyanobacteria;subsI;famI Bacillales;famXI Caldilineaceae Bacillaceae Sphingobacteriales;envOPS17 Obscuribacterales;unc Saprospiraceae Cyanobacteria;subsIII;famI Chitinophagaceae Cyanobacteria;subsII;famII Flavobacteriaceae Cyanobacteria;subsI;famI Cryomorphaceae Caldilineaceae Prevotellaceae Sphingobacteriales;envOPS17 Bacteroidaceae SaprospiraceaeRubrobacteriaceae Chitinophagaceae Actinobacteria;Other Flavobacteriaceae Pseudonocardiaceae Cryomorphaceae Propionibacteriaceae PrevotellaceaeMicromonosporaceae BacteroidaceaeCorynebacteriales;Other RubrobacteriaceaeCorynebacteriaceae Actinobacteria;Other Bifidobacteriaceae PseudonocardiaceaeActinomycetaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae JTB255marine benthic group Other families Other families Vibrionaceae Deltaproteobacteria;NB-j;unc Desulfobulbaceae Oxalobacteraceae Sphingomonadaceae Rhodospirillales;other Rhodospirillaceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Phyllobacteriaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Other_families Other_families Verrucomicrobiaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other VerrucomicrobiaceaeVerrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Other_families Verrucomicrobiales;DEV007Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae VerrucomicrobiaceaeChthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Verrucomicrobiales;DEV007Verrucomicrobia;OPB35_soil_gr;uncOther_families Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Chthoniobacterales;other Mycoplasmataceae VerrucomicrobiaceaeSpirochaetaceaeOther_families Gammaproteobacteria;other Xanthomonadaceae Verrucomicrobia;OPB35_soil_gr;uncSpirochaetaceae Verrucomicrobiales;DEV007Gammaproteobacteria;otherVerrucomicrobiaceae Xanthomonadaceae JTB255mar_benthic_gr Mycoplasmataceae Gammaproteobacteria;other Chthoniobacterales;other Xanthomonadaceae Verrucomicrobiales;DEV007 JTB255mar_benthic_gr Vibrionaceae Spirochaetaceae Xanthomonadaceae Verrucomicrobia;OPB35_soil_gr;uncJTB255mar_benthic_gr Chthoniobacterales;other Vibrionaceae Pseudomonadaceae Gammaproteobacteria;other JTB255mar_benthic_gr Mycoplasmataceae VibrionaceaeVerrucomicrobia;OPB35_soil_gr;unc Pseudomonadaceae Moraxellaceae Xanthomonadaceae Vibrionaceae Spirochaetaceae Pseudomonadaceae Mycoplasmataceae Moraxellaceae Pasteurellaceae JTB255mar_benthic_gr Pseudomonadaceae Gammaproteobacteria;other Moraxellaceae Spirochaetaceae Pasteurellaceae Halomonadaceae Vibrionaceae Moraxellaceae Xanthomonadaceae PasteurellaceaeGammaproteobacteria;other Halomonadaceae Enterobacteriaceae Pseudomonadaceae Pasteurellaceae JTB255mar_benthic_gr Halomonadaceae Xanthomonadaceae Enterobacteriaceae Chromatiaceae Moraxellaceae Halomonadaceae Vibrionaceae EnterobacteriaceaeJTB255mar_benthic_gr Chromatiaceae Alteromonadales;other Pasteurellaceae Enterobacteriaceae Pseudomonadaceae ChromatiaceaeVibrionaceae Alteromonadales;other Shewanellaceae Halomonadaceae Chromatiaceae Moraxellaceae Alteromonadales;otherPseudomonadaceae Shewanellaceae Pseudoalteromonadaceae Enterobacteriaceae Alteromonadales;other Pasteurellaceae Shewanellaceae Moraxellaceae Pseudoalteromonadaceae Helicobacteraceae Chromatiaceae Shewanellaceae Halomonadaceae PseudoalteromonadaceaePasteurellaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Alteromonadales;other Pseudoalteromonadaceae Enterobacteriaceae Helicobacteraceae Halomonadaceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Shewanellaceae Helicobacteraceae Chromatiaceae Deltaproteobacteria;NB1-j;uncEnterobacteriaceae Desulfobulbaceae Neisseriaceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Alteromonadales;other Desulfobulbaceae Chromatiaceae Neisseriaceae Oxalobacteraceae Helicobacteraceae Desulfobulbaceae Shewanellaceae Neisseriaceae Alteromonadales;other Oxalobacteraceae Comamonadaceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Pseudoalteromonadaceae Oxalobacteraceae Shewanellaceae Comamonadaceae Alphaproteobacteria;other Desulfobulbaceae Oxalobacteraceae Helicobacteraceae Comamonadaceae Pseudoalteromonadaceae Alphaproteobacteria;other Sphingomonadaceae Neisseriaceae Comamonadaceae Deltaproteobacteria;NB1-j;unc Alphaproteobacteria;otherHelicobacteraceae Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Oxalobacteraceae Alphaproteobacteria;other Desulfobulbaceae Sphingomonadaceae Deltaproteobacteria;NB1-j;unc Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Comamonadaceae Sphingomonadaceae Neisseriaceae Alphaproteobacteria;SAR11clade;Surface1Desulfobulbaceae Rickettsiales;SAR116clade Rhodospirillales;other Alphaproteobacteria;other Alphaproteobacteria;SAR11clade;Surface1 Oxalobacteraceae Rickettsiales;SAR116clade Neisseriaceae Rhodospirillales;other Rhodospirillales_inc_sedis Sphingomonadaceae Rickettsiales;SAR116clade Comamonadaceae Rhodospirillales;other Oxalobacteraceae Rhodospirillales_inc_sedis Rhodospirillaceae Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Alphaproteobacteria;other Rhodospirillales_inc_sedis Comamonadaceae Rhodospirillaceae Acetobacteraceae Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Sphingomonadaceae Rhodospirillaceae Alphaproteobacteria;other Acetobacteraceae Rhodobacteraceae Rhodospirillales;other Rhodospirillaceae Alphaproteobacteria;SAR11clade;Surface1 Acetobacteraceae Sphingomonadaceae Rhodobacteraceae Rhizobiales;other Rhodospirillales_inc_sedis Acetobacteraceae Rickettsiales;SAR116clade Rhodobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Rhizobiales;other Rhodobiaceae Rhodospirillaceae Rhodobacteraceae Rhodospirillales;other Rhizobiales;other Rickettsiales;SAR116clade Rhodobiaceae Rhizobiaceae Acetobacteraceae Rhizobiales;other Rhodospirillales_inc_sedis Rhodobiaceae Rhodospirillales;other Rhizobiaceae Phyllobacteriaceae Rhodobacteraceae Rhodobiaceae Rhodospirillaceae Rhizobia Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Vibrionaceae Families Flavobacteriaceae Flavobacteriaceae Helicobacteraceae Desulfobulbaceae Clostridiaceae1 Shewanellaceae Fusobacteriaceae Clostridiales;familyXII Pseudoalteromonadaceae Fusobacteriaceae Desulfobulbaceae Helicobacteraceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Gammaproptebacteria;other JTB255mar_benthic_gr Vibrionaceae Halomonadaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Other_families Verrucomicrobiaceae Other_families Verrucomicrobiales;DEV007 Verrucomicrobiaceae Chthoniobacterales;other Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Other_families Chthoniobacterales;other Mycoplasmataceae VerrucomicrobiaceaeOther_families Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Other_families Verrucomicrobiales;DEV007Verrucomicrobiaceae Mycoplasmataceae Gammaproteobacteria;other VerrucomicrobiaceaeOther_families Chthoniobacterales;other Verrucomicrobiales;DEV007 Spirochaetaceae Xanthomonadaceae Verrucomicrobiales;DEV007VerrucomicrobiaceaeVerrucomicrobia;OPB35_soil_gr;uncChthoniobacterales;other Gammaproteobacteria;other JTB255mar_benthic_gr Chthoniobacterales;other Verrucomicrobiales;DEV007Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;unc Xanthomonadaceae Vibrionaceae Verrucomicrobia;OPB35_soil_gr;uncChthoniobacterales;other SpirochaetaceaeMycoplasmataceae JTB255mar_benthic_gr Pseudomonadaceae Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;uncGammaproteobacteria;otherSpirochaetaceae Vibrionaceae Moraxellaceae Spirochaetaceae Mycoplasmataceae Xanthomonadaceae Gammaproteobacteria;other Pseudomonadaceae Pasteurellaceae Gammaproteobacteria;other Spirochaetaceae JTB255mar_benthic_gr Xanthomonadaceae Moraxellaceae Halomonadaceae Xanthomonadaceae Gammaproteobacteria;other VibrionaceaeJTB255mar_benthic_gr Pasteurellaceae Enterobacteriaceae JTB255mar_benthic_gr Xanthomonadaceae Pseudomonadaceae Vibrionaceae Halomonadaceae Chromatiaceae Vibrionaceae JTB255mar_benthic_gr Moraxellaceae Pseudomonadaceae Enterobacteriaceae Alteromonadales;other Pseudomonadaceae Vibrionaceae PasteurellaceaeMoraxellaceae Chromatiaceae Shewanellaceae Moraxellaceae Pseudomonadaceae Halomonadaceae Pasteurellaceae Alteromonadales;other Pseudoalteromonadaceae Pasteurellaceae Moraxellaceae EnterobacteriaceaeHalomonadaceae Shewanellaceae Helicobacteraceae Halomonadaceae Pasteurellaceae ChromatiaceaeEnterobacteriaceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Enterobacteriaceae Halomonadaceae Alteromonadales;otherChromatiaceae Helicobacteraceae Desulfobulbaceae Chromatiaceae Enterobacteriaceae Shewanellaceae Alteromonadales;other Deltaproteobacteria;NB1-j;unc Neisseriaceae Alteromonadales;other Chromatiaceae PseudoalteromonadaceaeShewanellaceae Desulfobulbaceae Oxalobacteraceae Shewanellaceae Alteromonadales;other Helicobacteraceae Pseudoalteromonadaceae Neisseriaceae Comamonadaceae Pseudoalteromonadaceae Shewanellaceae Deltaproteobacteria;NB1-j;uncHelicobacteraceae Oxalobacteraceae Alphaproteobacteria;other Helicobacteraceae Pseudoalteromonadaceae Desulfobulbaceae Deltaproteobacteria;NB1-j;unc Comamonadaceae Sphingomonadaceae Deltaproteobacteria;NB1-j;unc Helicobacteraceae Neisseriaceae Desulfobulbaceae Alphaproteobacteria;other Alphaproteobacteria;SAR11clade;Surface1 Desulfobulbaceae Deltaproteobacteria;NB1-j;unc Oxalobacteraceae Neisseriaceae Sphingomonadaceae Rickettsiales;SAR116clade Neisseriaceae Desulfobulbaceae Comamonadaceae Oxalobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Oxalobacteraceae Neisseriaceae Alphaproteobacteria;otherComamonadaceae Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Comamonadaceae Oxalobacteraceae Sphingomonadaceae Alphaproteobacteria;other Rhodospirillales;other Rhodospirillaceae Alphaproteobacteria;other Comamonadaceae Alphaproteobacteria;SAR11clade;Surface1Sphingomonadaceae Rhodospirillales_inc_sedis Acetobacteraceae Sphingomonadaceae Alphaproteobacteria;other Rickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillaceae Rhodobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Sphingomonadaceae Rhodospirillales;other Rickettsiales;SAR116clade Acetobacteraceae Rhizobiales;other Rickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales_inc_sedis Rhodospirillales;other Rhodobacteraceae Rhodobiaceae Rhodospirillales;other Rickettsiales;SAR116clade Rhodospirillaceae Rhodospirillales_inc_sedis Rhizobiales;other Rhizobiaceae Rhodospirillales_inc_sedis Rhodospirillales;other Acetobacteraceae Rhodospirillaceae Rhodobiaceae Phyllobacteriaceae Rhodospirillaceae Rhodospirillales_inc_sedis Rhodobacteraceae Acetobacteraceae Rhizobiaceae Rhizobiales;MNG7 Acetobacteraceae Rhodospirillaceae Rhizobiales;other Rhodobacteraceae Phyllobacteriaceae Hyphomicrobiaceae Rhodobacteraceae Acetobacteraceae Rhodobiaceae Rhizobiales;other Rhizobiales;MNG7 Bradyrhizobiaceae Rhizobiales;other Rhodobacteraceae Rhizobiaceae Rhodobiaceae Hyphomicrobiaceae Planctomycetaceae Rhodobiaceae Rhizobiales;other Phyllobacteriaceae Rhizobiaceae Bradyrhizobiaceae Nitrospiraceae Rhizobiaceae Rhodobiaceae Rhizobiales;MNG7 Phyllobacteriaceae Planctomycetaceae Fusobacteriaceae Phyllobacteriaceae Rhizobiaceae HyphomicrobiaceaeRhizobiales;MNG7 Nitrospiraceae Veillonellaceae Rhizobiales;MNG7 Phyllobacteriaceae Bradyrhizobiaceae Hyphomicrobiaceae Fuso Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae rtoatra lse ae xadd n h rsetv pe hr pyu sie sb=ust fmfml; n=nutrd icicra; mar=marine; inc=incertae; unc=uncultured; fam=family; subs=subset; slice. phylum chart pie respective the gr=group. on expanded represented. are are samples of 10% classes least at in 2% Proteobacteria > abundance relative with families and sample one least at in 0.5% > abundance relative with Phyla sites. S2 figure Supplementary Seawater samples

Aquaculture site Control site A Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlamydiae Bacteroidetes Actinobacteria Cyanobacteria Chloroflexi Chlamydiae Chloroflexi Chlorobi Bacteroidetes Chlorobi Chlamydiae Armatimonadetes Chlamydiae Bacteroidetes Aminicenantes Bacteroidetes Armatimonadetes Actinobacteria Armatimonadetes Aminicenantes Acidobacteria Aminicenantes Actinobacteria Actinobacteria Acidobacteria Acidobacteria Other_Phyla Bacteria;Other Other_Phyla WS6 Other_Phyla Bacteria;Other Verrucomicrobia Bacteria;Other WS6 Tenericutes WS6 Verrucomicrobia TM6_Dependentiae VerrucomicrobiaTenericutes Spirochaetae TenericutesTM6_Dependentiae Saccharibacteria TM6_Dependentiae Spirochaetae SBR1093 Spirochaetae Saccharibacteria Proteobacteria Saccharibacteria SBR1093 Planctomycetes SBR1093 Proteobacteria Parcubacteria Proteobacteria Planctomycetes Nitrospirae Planctomycetes Parcubacteria Marinimicrobia_SAR406clade Parcubacteria Nitrospirae Latescibacteria Nitrospirae Marinimicrobia_SAR406clade Hydrogenedentes Marinimicrobia_SAR406clade Latescibacteria Gracilibacteria Latescibacteria Hydrogenedentes Gemmatimonadetes Hydrogenedentes Gracilibacteria Fusobacteria Gracilibacteria Gemmatimonadetes Firmicutes Gemmatimonadetes Fusobacteria Deinococcus-Thermus Fusobacteria Firmicutes Cyanobacteria Firmicutes Deinococcus-Thermus Chloroflexi Deinococcus-Thermus Cyanobacteria Chlorobi Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria - Pie charts summarizing the phylum (A) and family (B) level microbiota composition of seawater samples in the two sampling two the in samples seawater of composition microbiota level (B) family and (A) phylum the summarizing charts Pie - Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Subclasses Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Phyla Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Other_phyla Verrucomicrobia Proteobacteria Planctomycetes Marinimicrobia_SAR406clade Gracilibacteria Fusobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Other_Phyla Bacteria;Other Other_Phyla WS6 Bacteria;Other Other_Phyla VerrucomicrobiaWS6 Bacteria;Other TenericutesVerrucomicrobia Other_Phyla WS6 TM6_Dependentiae Tenericutes Bacteria;Other VerrucomicrobiaSpirochaetae TM6_Dependentiae WS6 TenericutesSaccharibacteria Spirochaetae Verrucomicrobia SBR1093 TM6_Dependentiae Saccharibacteria Tenericutes ProteobacteriaSpirochaetae SBR1093 Other_Phyla TM6_Dependentiae Planctomycetes Saccharibacteria Proteobacteria Bacteria;Other Spirochaetae ParcubacteriaSBR1093 Planctomycetes Other_Phyla WS6 Saccharibacteria NitrospiraeProteobacteria Parcubacteria Bacteria;Other VerrucomicrobiaSBR1093 Marinimicrobia_SAR406cladePlanctomycetes Nitrospirae WS6 TenericutesProteobacteria Latescibacteria Parcubacteria Marinimicrobia_SAR406clade Verrucomicrobia TM6_Dependentiae Planctomycetes Hydrogenedentes Nitrospirae Latescibacteria Tenericutes Spirochaetae Parcubacteria Gracilibacteria Marinimicrobia_SAR406cladeHydrogenedentes TM6_Dependentiae Saccharibacteria Nitrospirae Gemmatimonadetes Latescibacteria Gracilibacteria Spirochaetae SBR1093 Marinimicrobia_SAR406clade Fusobacteria HydrogenedentesGemmatimonadetes Saccharibacteria Proteobacteria Latescibacteria Firmicutes Gracilibacteria Fusobacteria SBR1093 Planctomycetes Hydrogenedentes Deinococcus-Thermus Gemmatimonadetes Firmicutes Proteobacteria Parcubacteria Gracilibacteria Cyanobacteria Fusobacteria Deinococcus-Thermus Planctomycetes Nitrospirae Gemmatimonadetes Chloroflexi Firmicutes Cyanobacteria Parcubacteria Marinimicrobia_SAR406clade Fusobacteria Chlorobi ChloroflexiDeinococcus-Thermus Nitrospirae Latescibacteria Firmicutes Chlamydiae ChlorobiCyanobacteria Marinimicrobia_SAR406clade Hydrogenedentes Deinococcus-Thermus Bacteroidetes Chlamydiae Chloroflexi Latescibacteria Gracilibacteria Cyanobacteria Armatimonadetes BacteroidetesChlorobi Hydrogenedentes Gemmatimonadetes Chloroflexi Aminicenantes Armatimonadetes Chlamydiae Gracilibacteria Fusobacteria Chlorobi Actinobacteria Aminicenantes Bacteroidetes Gemmatimonadetes Firmicutes Chlamydiae Acidobacteria Actinobacteria Armatimonadetes Fusobacteria Deinococcus-Thermus Bacteroidetes Acidobacteria Aminicenantes Firmicutes Cyanobacteria Armatimonadetes Actinobacteria Deinococcus-Thermus Chloroflexi Aminicenantes Acidobacteria Cyanobacteria Chlorobi Actinobacteria Chloroflexi Chlamydiae Acidobacteria Chlorobi Bacteroidetes Chlamydiae Armatimonadetes Bacteroidetes Aminicenantes Armatimonadetes Actinobacteria Aminicenantes Acidobacteria Actinobacteria Acidobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Proteobacteria;other Epsilonproteobacteria Betaproteobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria B Fusobacteriaceae Peptostreptococcaceae Lachnospiraceaea Staphylococcaceae Bacillaceae Cyanobacteria;subsI;famI Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Other_families Spirochaetaceae Verrucomicrobiaceae Gammaproteobacteria;other Verrucomicrobiales;DEV007 Xanthomonadaceae Other_families Chthoniobacterales;other Verrucomicrobiaceae JTB255mar_benthic_gr Verrucomicrobia;OPB35_soil_gr;unc Verrucomicrobiales;DEV007 Vibrionaceae Mycoplasmataceae Chthoniobacterales;other Pseudomonadaceae Spirochaetaceae Verrucomicrobia;OPB35_soil_gr;unc Moraxellaceae Gammaproteobacteria;other Mycoplasmataceae Other_families Pasteurellaceae Xanthomonadaceae Spirochaetaceae VerrucomicrobiaceaeHalomonadaceae JTB255mar_benthic_gr Gammaproteobacteria;other Verrucomicrobiales;DEV007Enterobacteriaceae Vibrionaceae Xanthomonadaceae Other_families Chthoniobacterales;other Chromatiaceae Pseudomonadaceae JTB255mar_benthic_gr VerrucomicrobiaceaeVerrucomicrobia;OPB35_soil_gr;uncAlteromonadales;other VibrionaceaeMoraxellaceae Verrucomicrobiales;DEV007Mycoplasmataceae Pseudomonadaceae Shewanellaceae Pasteurellaceae Moraxellaceae Chthoniobacterales;other Spirochaetaceae Pseudoalteromonadaceae Halomonadaceae Pasteurellaceae Verrucomicrobia;OPB35_soil_gr;uncGammaproteobacteria;other Helicobacteraceae Enterobacteriaceae Halomonadaceae Mycoplasmataceae Xanthomonadaceae Deltaproteobacteria;NB1-j;unc Chromatiaceae Enterobacteriaceae Spirochaetaceae JTB255mar_benthic_gr Desulfobulbaceae Alteromonadales;other Chromatiaceae Gammaproteobacteria;other Vibrionaceae Neisseriaceae Shewanellaceae Alteromonadales;other Xanthomonadaceae Pseudomonadaceae Oxalobacteraceae Pseudoalteromonadaceae Shewanellaceae JTB255mar_benthic_gr Moraxellaceae Comamonadaceae Helicobacteraceae Pseudoalteromonadaceae Vibrionaceae Pasteurellaceae Alphaproteobacteria;other Deltaproteobacteria;NB1-j;unc Helicobacteraceae Pseudomonadaceae Halomonadaceae Sphingomonadaceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Moraxellaceae Desulfobulbaceae Enterobacteriaceae Alphaproteobacteria;SAR11clade;Surface1 Neisseriaceae Neisseriaceae Pasteurellaceae Chromatiaceae Rickettsiales;SAR116clade Oxalobacteraceae Oxalobacteraceae Halomonadaceae Alteromonadales;other Rhodospirillales;other Comamonadaceae Comamonadaceae Enterobacteriaceae Shewanellaceae Rhodospirillales_inc_sedis Alphaproteobacteria;other Alphaproteobacteria;other Chromatiaceae Pseudoalteromonadaceae Rhodospirillaceae Sphingomonadaceae Sphingomonadaceae Alteromonadales;other Helicobacteraceae Acetobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Alphaproteobacteria;SAR11clade;Surface1 Shewanellaceae Deltaproteobacteria;NB1-j;unc Rhodobacteraceae Rickettsiales;SAR116clade Rickettsiales;SAR116clade Pseudoalteromonadaceae Desulfobulbaceae Rhizobiales;other Rhodospirillales;other Rhodospirillales;other Helicobacteraceae Neisseriaceae Rhodobiaceae Rhodospirillales_inc_sedis Rhodospirillales_inc_sedis Deltaproteobacteria;NB1-j;unc Oxalobacteraceae Rhizobiaceae Rhodospirillaceae Rhodospirillaceae Acetobacteraceae Desulfobulbaceae Comamonadaceae Phyllobacteriaceae Acetobacteraceae Rhodobacteraceae Neisseriaceae Alphaproteobacteria;other Rhizobiales;MNG7 Rhodobacteraceae Rhizobiales;other Oxalobacteraceae Sphingomonadaceae Hyphomicrobiaceae Rhizobiales;other Rhodobiaceae Comamonadaceae Alphaproteobacteria;SAR11clade;Surface1 Bradyrhizobiaceae Rhodobiaceae Rhizobiaceae Alphaproteobacteria;other Rickettsiales;SAR116clade Planctomycetaceae Rhizobiaceae Phyllobacteriaceae Sphingomonadaceae Rhodospirillales;other Nitrospiraceae Phyllobacteriaceae Rhizobiales;MNG7 Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales_inc_sedis Fusobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Rickettsiales;SAR116clade Rhodospirillaceae Veillonellaceae Hyphomicrobiaceae Bradyrhizobiaceae Rhodospirillales;other Acetobacteraceae Erysipelotrichaceae Planctomycetaceae Bradyrhizobiaceae Rhodospirillales_inc_sedis Rhodobacteraceae NitrospiraceaeClostridiales;other Planctomycetaceae Fusobacteriaceae Rhodospirillaceae Rhizobiales;other Peptostreptococcaceae Nitrospiraceae Veillonellaceae Acetobacteraceae Rhodobiaceae Lachnospiraceae Fusobacteriaceae Erysipelotrichaceae Rhodobacteraceae Rhizobiaceae Clostridiales;famXII Veillonellaceae Clostridiales;other Rhizobiales;other Phyllobacteriaceae Clostridiales;famXI Erysipelotrichaceae Peptostreptococcaceae Rhodobiaceae Rhizobiales;MNG7 Clostridiaceae1 Clostridiales;other Lachnospiraceae Rhizobiaceae Hyphomicrobiaceae Streptococcaceae Peptostreptococcaceae Clostridiales;famXII Phyllobacteriaceae Bradyrhizobiaceae Lactobacillaceae Lachnospiraceae Clostridiales;famXI Rhizobiales;MNG7 Planctomycetaceae Enterococcaceae Clostridiales;famXII Clostridiaceae1 Hyphomicrobiaceae Nitrospiraceae Carnobacteriaceae Streptococcaceae Clostridiales;famXI Bradyrhizobiaceae Fusobacteriaceae Lactobacillaceae Staphylococcaceae Clostridiaceae1 Enterococcaceae Planctomycetaceae VeillonellaceaeBacillales;famXI Streptococcaceae Carnobacteriaceae Nitrospiraceae Verrucomicrobiaceae Moraxellaceae Halomonadaceae Verrucomicrobiaceae Moraxellaceae Other families Other families Helicobacteraceae Desulfobulbaceae Comamonadaceae Alphaproteobacteria;other Alphaproteobacteria;SAR11clade Rickettsiales;SAR116clade Rhodospirillaceae Rhodobacteraceae Rhizobiales;other Planctomycetaceae Other_families Verrucomicrobiaceae Other_families Verrucomicrobiales;DEV007 Other_families VerrucomicrobiaceaeChthoniobacterales;other VerrucomicrobiaceaeVerrucomicrobiales;DEV007Verrucomicrobia;OPB35_soil_gr;unc Verrucomicrobiales;DEV007Chthoniobacterales;other Mycoplasmataceae Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;uncSpirochaetaceae Verrucomicrobia;OPB35_soil_gr;uncMycoplasmataceae Gammaproteobacteria;other Mycoplasmataceae Spirochaetaceae Xanthomonadaceae Spirochaetaceae Gammaproteobacteria;other JTB255mar_benthic_gr Gammaproteobacteria;other Xanthomonadaceae Vibrionaceae Xanthomonadaceae JTB255mar_benthic_gr Pseudomonadaceae JTB255mar_benthic_gr Vibrionaceae Moraxellaceae Vibrionaceae Pseudomonadaceae Pasteurellaceae Pseudomonadaceae Moraxellaceae Halomonadaceae Moraxellaceae Pasteurellaceae Enterobacteriaceae Pasteurellaceae Halomonadaceae Chromatiaceae Halomonadaceae Enterobacteriaceae Alteromonadales;other Enterobacteriaceae Chromatiaceae Shewanellaceae Chromatiaceae Alteromonadales;other Pseudoalteromonadaceae Alteromonadales;other Shewanellaceae Helicobacteraceae Shewanellaceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Pseudoalteromonadaceae Helicobacteraceae Desulfobulbaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Oxalobacteraceae Desulfobulbaceae Neisseriaceae Comamonadaceae Neisseriaceae Oxalobacteraceae Alphaproteobacteria;other Oxalobacteraceae Comamonadaceae Sphingomonadaceae Comamonadaceae Alphaproteobacteria;other Alphaproteobacteria;SAR11clade;Surface1 Alphaproteobacteria;other Sphingomonadaceae Rickettsiales;SAR116clade Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillaceae Rhodospirillales;other Rhodospirillales_inc_sedis Acetobacteraceae Rhodospirillales_inc_sedis Rhodospirillaceae Rhodobacteraceae Rhodospirillaceae Acetobacteraceae Rhizobiales;other Acetobacteraceae Rhodobacteraceae Rhodobiaceae Rhodobacteraceae Rhizobiales;other Rhizobiaceae Rhizobiales;other Rhodobiaceae Phyllobacteriaceae Rhodobiaceae Rhizobiaceae Rhizobiales;MNG7 Rhizobiaceae Phyllobacteriaceae Hyphomicrobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Bradyrhizobiaceae Rhizobiales;MNG7 Hyphomicrobiaceae Planctomycetaceae Hyphomicrobiaceae Bradyrhizobiaceae Nitrospiraceae Bradyrhizobiaceae Planctomycetaceae Fusobacteriaceae Planctomycetaceae Nitrospiraceae Veillonellaceae Nitrospiraceae Fusobacteriaceae Erysipelotrichaceae Fusobacteriaceae VeillonellaceaeClostridiales;other VeillonellaceaeErysipelotrichaceae Peptostreptococcaceae Erysipelotrichaceae Clostridiales;other Lachnospiraceae Clostridiales;other Peptostreptococcaceae Clostridiales;famXII Peptostreptococcaceae Lachnospiraceae Clostridiales;famXI Lachnospiraceae Clostridiales;famXII Clostridiaceae1 Clostridiales;famXII Clostridiales;famXI Streptococcaceae Clostridiales;famXI Clostridiaceae1 Lactobacillaceae Clostridiaceae1 Streptococcaceae Enterococcaceae Streptococcaceae Lactobacillaceae Carnobacteriaceae Lactobacillaceae Enterococcaceae Staphylococcaceae Enterococcaceae Carnobacteriaceae Bacillales;famXI Carnobacteriaceae Staphylococcaceae Bacillaceae Staphylococcaceae Bacillales;famXI Obscuribacterales;unc Bacillales;famXI Bacillaceae Cyanobacteria;subsIII;famI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsII;famII Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsI;famI Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Caldilineaceae Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Sphingobacteriales;envOPS17 Cyanobacteria;subsI;famI Caldilineaceae Saprospiraceae Caldilineaceae Sphingobacteriales;envOPS17 Chitinophagaceae Sphingobacteriales;envOPS17 Saprospiraceae Flavobacteriaceae Saprospiraceae Chitinophagaceae Cryomorphaceae Chitinophagaceae Flavobacteriaceae Prevotellaceae Flavobacteriaceae Cryomorphaceae Bacteroidaceae Cryomorphaceae Prevotellaceae Rubrobacteriaceae Prevotellaceae Bacteroidaceae Actinobacteria;Other Bacteroidaceae Rubrobacteriaceae Pseudonocardiaceae Rubrobacteriaceae Actinobacteria;Other Propionibacteriaceae Actinobacteria;Other Pseudonocardiaceae Micromonosporaceae Pseudonocardiaceae Propionibacteriaceae Corynebacteriales;Other Propionibacteriaceae Micromonosporaceae Corynebacteriaceae Micromonosporaceae Corynebacteriales;Other Bifidobacteriaceae Corynebacteriales;Other Corynebacteriaceae Actinomycetaceae Corynebacteriaceae Bifidobacteriaceae Bifidobacteriaceae Actinomycetaceae Actinomycetaceae Other_families VerrucomicrobiaceaeOther_families Verrucomicrobiales;DEV007Verrucomicrobiaceae Other_families Chthoniobacterales;other Verrucomicrobiales;DEV007 VerrucomicrobiaceaeVerrucomicrobia;OPB35_soil_gr;uncChthoniobacterales;other Verrucomicrobiales;DEV007Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;unc Chthoniobacterales;other Spirochaetaceae Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;uncGammaproteobacteria;other Spirochaetaceae Mycoplasmataceae Xanthomonadaceae Gammaproteobacteria;other SpirochaetaceaeJTB255mar_benthic_gr Xanthomonadaceae Gammaproteobacteria;otherVibrionaceae JTB255mar_benthic_gr Xanthomonadaceae Pseudomonadaceae Vibrionaceae JTB255mar_benthic_gr Moraxellaceae Pseudomonadaceae VibrionaceaePasteurellaceae Moraxellaceae Pseudomonadaceae Halomonadaceae Pasteurellaceae Moraxellaceae Enterobacteriaceae Halomonadaceae PasteurellaceaeChromatiaceae Enterobacteriaceae Halomonadaceae Alteromonadales;other Chromatiaceae EnterobacteriaceaeShewanellaceae Alteromonadales;other ChromatiaceaePseudoalteromonadaceae Shewanellaceae Alteromonadales;otherHelicobacteraceae Pseudoalteromonadaceae Shewanellaceae Deltaproteobacteria;NB1-j;unc Helicobacteraceae PseudoalteromonadaceaeDesulfobulbaceae Deltaproteobacteria;NB1-j;unc Helicobacteraceae Neisseriaceae Desulfobulbaceae Deltaproteobacteria;NB1-j;uncOxalobacteraceae Neisseriaceae Desulfobulbaceae Comamonadaceae Oxalobacteraceae Neisseriaceae Alphaproteobacteria;other Comamonadaceae Oxalobacteraceae Sphingomonadaceae Alphaproteobacteria;other Comamonadaceae Alphaproteobacteria;SAR11clade;Surface1 Sphingomonadaceae Alphaproteobacteria;otherRickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Sphingomonadaceae Rhodospirillales;other Rickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1Rhodospirillales_inc_sedis Rhodospirillales;other Rickettsiales;SAR116clade Rhodospirillaceae Rhodospirillales_inc_sedis Rhodospirillales;other Acetobacteraceae Rhodospirillaceae Rhodospirillales_inc_sedis Rhodobacteraceae Acetobacteraceae Rhodospirillaceae Rhizobiales;other Rhodobacteraceae Acetobacteraceae Rhodobiaceae Rhizobiales;other Rhodobacteraceae Rhizobiaceae Rhodobiaceae Rhizobiales;other Phyllobacteriaceae Rhizobiaceae Rhodobiaceae Rhizobiales;MNG7 Phyllobacteriaceae Rhizobiaceae Hyphomicrobiaceae Rhizobiales;MNG7 Phyllobacteriaceae Bradyrhizobiaceae Hyphomicrobiaceae Rhizobiales;MNG7 Planctomycetaceae Bradyrhizobiaceae HyphomicrobiaceaeNitrospiraceae Planctomycetaceae Bradyrhizobiaceae Fusobacteriaceae Nitrospiraceae Planctomycetaceae VeillonellaceaeFusobacteriaceae NitrospiraceaeErysipelotrichaceae Veillonellaceae Fusobacteriaceae Clostridiales;other Erysipelotrichaceae VeillonellaceaePeptostreptococcaceae Clostridiales;other Erysipelotrichaceae Lachnospiraceae Peptostreptococcaceae Clostridiales;other Clostridiales;famXII Lachnospiraceae PeptostreptococcaceaeClostridiales;famXI Clostridiales;famXII Lachnospiraceae Clostridiaceae1 Clostridiales;famXI Clostridiales;famXII Streptococcaceae Clostridiaceae1 Clostridiales;famXI Lactobacillaceae Streptococcaceae Clostridiaceae1 Enterococcaceae Lactobacillaceae StreptococcaceaeCarnobacteriaceae Enterococcaceae Lactobacillaceae Staphylococcaceae Carnobacteriaceae EnterococcaceaeBacillales;famXI Staphylococcaceae Carnobacteriaceae Bacillaceae Bacillales;famXI Staphylococcaceae Obscuribacterales;unc Bacillaceae Bacillales;famXI Cyanobacteria;subsIII;famI Obscuribacterales;unc Bacillaceae Cyanobacteria;subsII;famII Cyanobacteria;subsIII;famI Obscuribacterales;unc Cyanobacteria;subsI;famI Cyanobacteria;subsII;famII Cyanobacteria;subsIII;famI Caldilineaceae Cyanobacteria;subsI;famI Cyanobacteria;subsII;famII Sphingobacteriales;envOPS17 Caldilineaceae Cyanobacteria;subsI;famI Saprospiraceae Sphingobacteriales;envOPS17 Caldilineaceae Chitinophagaceae Saprospiraceae Sphingobacteriales;envOPS17 Flavobacteriaceae Chitinophagaceae SaprospiraceaeCryomorphaceae Flavobacteriaceae Chitinophagaceae Prevotellaceae Cryomorphaceae Flavobacteriaceae Bacteroidaceae Prevotellaceae Cryomorphaceae Rubrobacteriaceae Bacteroidaceae PrevotellaceaeActinobacteria;Other Rubrobacteriaceae BacteroidaceaePseudonocardiaceae Actinobacteria;Other RubrobacteriaceaePropionibacteriaceae Pseudonocardiaceae Actinobacteria;Other Micromonosporaceae Propionibacteriaceae PseudonocardiaceaeCorynebacteriales;Other Micromonosporaceae PropionibacteriaceaeCorynebacteriaceae Corynebacteriales;Other MicromonosporaceaeBifidobacteriaceae Corynebacteriaceae Corynebacteriales;Other Actinomycetaceae Bifidobacteriaceae Corynebacteriaceae Actinomycetaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Families Rhodobacteraceae Cryomorphaceae Flavobacteriaceae Flavobacteriaceae Cryomorphaceae Cyanobacteria;subsectionI;familyI Rickettsiales;SAR116clade Rhodobacteraceae Bacillaceae Other_families Verrucomicrobiaceae Gammaprotoebacteria;other JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Halomonadaceae Pseudoalteromonadaceae Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Other_families Verrucomicrobiales;DEV007 Verrucomicrobiaceae Chthoniobacterales;other Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Chthoniobacterales;other Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Other_families Mycoplasmataceae Gammaproteobacteria;other VerrucomicrobiaceaeSpirochaetaceae Xanthomonadaceae Verrucomicrobiales;DEV007Gammaproteobacteria;other JTB255mar_benthic_gr Chthoniobacterales;other Xanthomonadaceae Vibrionaceae Verrucomicrobia;OPB35_soil_gr;uncJTB255mar_benthic_gr Pseudomonadaceae Mycoplasmataceae Vibrionaceae Moraxellaceae Spirochaetaceae Pseudomonadaceae Pasteurellaceae Gammaproteobacteria;other Moraxellaceae Halomonadaceae Xanthomonadaceae Pasteurellaceae Enterobacteriaceae JTB255mar_benthic_gr Halomonadaceae Chromatiaceae Vibrionaceae Enterobacteriaceae Alteromonadales;other Pseudomonadaceae Chromatiaceae Shewanellaceae Moraxellaceae Alteromonadales;other Pseudoalteromonadaceae Pasteurellaceae Shewanellaceae Helicobacteraceae Halomonadaceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Enterobacteriaceae Helicobacteraceae Desulfobulbaceae Chromatiaceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Alteromonadales;other Desulfobulbaceae Oxalobacteraceae Shewanellaceae Neisseriaceae Comamonadaceae Pseudoalteromonadaceae Oxalobacteraceae Alphaproteobacteria;other Helicobacteraceae Comamonadaceae Sphingomonadaceae Deltaproteobacteria;NB1-j;unc Alphaproteobacteria;other Alphaproteobacteria;SAR11clade;Surface1 Desulfobulbaceae Sphingomonadaceae Rickettsiales;SAR116clade Neisseriaceae Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Oxalobacteraceae Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Comamonadaceae Rhodospirillales;other Rhodospirillaceae Alphaproteobacteria;other Rhodospirillales_inc_sedis Acetobacteraceae Sphingomonadaceae Rhodospirillaceae Rhodobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Acetobacteraceae Rhizobiales;other Rickettsiales;SAR116clade Rhodobacteraceae Rhodobiaceae Rhodospirillales;other Rhizobiales;other Rhizobiaceae Rhodospirillales_inc_sedis Rhodobiaceae Phyllobacteriaceae Rhodospirillaceae Rhizobiaceae Rhizobiales;MNG7 Acetobacteraceae Phyllobacteriaceae Hyphomicrobiaceae Rhodobacteraceae Rhizobiales;MNG7 Bradyrhizobiaceae Rhizobiales;other Hyphomicrobiaceae Planctomycetaceae Rhodobiaceae Bradyrhizobiaceae Nitrospiraceae Rhizobiaceae Planctomycetaceae Fusobacteriaceae Phyllobacteriaceae Nitrospiraceae Veillonellaceae Rhizobiales;MNG7 Fusobacteriaceae Erysipelotrichaceae Hyphomicrobiaceae Veillonellaceae Clostridiales;other Bradyrhizobiaceae Erysipelotrichaceae Peptostreptococcaceae Planctomycetaceae Clostridiales;other Lachnospiraceae Nitrospiraceae Peptostreptococcaceae Clostridiales;famXII Fusobacteriaceae Lachnospiraceae Clostridiales;famXI VeillonellaceaeClostridiales;famXII Clostridiaceae1 Erysipelotrichaceae Clostridiales;famXI Streptococcaceae Clostridiales;other Clostridiaceae1 Lactobacillaceae Peptostreptococcaceae Streptococcaceae Enterococcaceae Lachnospiraceae Lactobacillaceae Carnobacteriaceae Clostridiales;famXII Enterococcaceae Staphylococcaceae Clostridiales;famXI Carnobacteriaceae Bacillales;famXI Clostridiaceae1 Staphylococcaceae Bacillaceae Streptococcaceae Bacillales;famXI Obscuribacterales;unc Lactobacillaceae Bacillaceae Cyanobacteria;subsIII;famI Enterococcaceae Obscuribacterales;unc Cyanobacteria;subsII;famII Carnobacteriaceae Cyanobacteria;subsIII;famI Cyanobacteria;subsI;famI Staphylococcaceae Cyanobacteria;subsII;famII Caldilineaceae Bacillales;famXI Cyanobacteria;subsI;famI Sphingobacteriales;envOPS17 Bacillaceae Caldilineaceae Saprospiraceae Obscuribacterales;unc Sphingobacteriales;envOPS17 Chitinophagaceae Cyanobacteria;subsIII;famI Saprospiraceae Flavobacteriaceae Cyanobacteria;subsII;famII Chitinophagaceae Cryomorphaceae Cyanobacteria;subsI;famI Flavobacteriaceae Prevotellaceae Caldilineaceae Cryomorphaceae Bacteroidaceae Sphingobacteriales;envOPS17 Prevotellaceae Rubrobacteriaceae Saprospiraceae Bacteroidaceae Actinobacteria;Other Chitinophagaceae Rubrobacteriaceae Pseudonocardiaceae Flavobacteriaceae Actinobacteria;Other Propionibacteriaceae Cryomorphaceae Pseudonocardiaceae Micromonosporaceae Prevotellaceae Propionibacteriaceae Corynebacteriales;Other Bacteroidaceae Micromonosporaceae Corynebacteriaceae Rubrobacteriaceae Corynebacteriales;Other Bifidobacteriaceae Actinobacteria;Other Corynebacteriaceae Actinomycetaceae Pseudonocardiaceae Bifidobacteriaceae Propionibacteriaceae Actinomycetaceae Micromonosporaceae Corynebacteriales;Other Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Other_families SpirochaetaceaeVerrucomicrobiaceae Gammaproteobacteria;otherVerrucomicrobiales;DEV007 Xanthomonadaceae Chthoniobacterales;other JTB255mar_benthic_gr Verrucomicrobia;OPB35_soil_gr;unc VibrionaceaeMycoplasmataceae Pseudomonadaceae Spirochaetaceae Moraxellaceae Gammaproteobacteria;other PasteurellaceaeXanthomonadaceae Halomonadaceae JTB255mar_benthic_gr EnterobacteriaceaeVibrionaceae ChromatiaceaePseudomonadaceae Alteromonadales;otherMoraxellaceae Shewanellaceae Pasteurellaceae PseudoalteromonadaceaeHalomonadaceae Helicobacteraceae Enterobacteriaceae Deltaproteobacteria;NB1-j;uncChromatiaceae Desulfobulbaceae Alteromonadales;other Neisseriaceae Shewanellaceae Oxalobacteraceae Pseudoalteromonadaceae Comamonadaceae Helicobacteraceae Alphaproteobacteria;otherDeltaproteobacteria;NB1-j;unc Sphingomonadaceae Desulfobulbaceae Alphaproteobacteria;SAR11clade;Surface1Neisseriaceae Rickettsiales;SAR116clade Oxalobacteraceae Rhodospirillales;other Comamonadaceae Rhodospirillales_inc_sedis Alphaproteobacteria;other Rhodospirillaceae Sphingomonadaceae Acetobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Rhodobacteraceae Rickettsiales;SAR116clade Rhizobiales;other Rhodospirillales;other Rhodobiaceae Rhodospirillales_inc_sedis Rhizobiaceae Rhodospirillaceae Phyllobacteriaceae Acetobacteraceae Rhizobiales;MNG7 Rhodobacteraceae HyphomicrobiaceaeRhizobiales;other Bradyrhizobiaceae Rhodobiaceae Planctomycetaceae Rhizobiaceae NitrospiraceaePhyllobacteriaceae Fusobacteriaceae Rhizobiales;MNG7 VeillonellaceaeHyphomicrobiaceae Erysipelotrichaceae Bradyrhizobiaceae Clostridiales;other Planctomycetaceae PeptostreptococcaceaeNitrospiraceae Lachnospiraceae Fusobacteriaceae Clostridiales;famXII Veillonellaceae Clostridiales;famXI Erysipelotrichaceae Clostridiaceae1 Clostridiales;other StreptococcaceaePeptostreptococcaceae Lactobacillaceae Lachnospiraceae EnterococcaceaeClostridiales;famXII Carnobacteriaceae Clostridiales;famXI Staphylococcaceae Clostridiaceae1 Bacillales;famXI Streptococcaceae Bacillaceae Lactobacillaceae Obscuribacterales;unc Enterococcaceae Cyanobacteria;subsIII;famI Carnobacteriaceae Cyanobacteria;subsII;famII Staphylococcaceae Cyanobacteria;subsI;famI Bacillales;famXI Caldilineaceae Bacillaceae Sphingobacteriales;envOPS17 Obscuribacterales;unc SaprospiraceaeCyanobacteria;subsIII;famI Chitinophagaceae Cyanobacteria;subsII;famII Flavobacteriaceae Cyanobacteria;subsI;famI Cryomorphaceae Caldilineaceae PrevotellaceaeSphingobacteriales;envOPS17 BacteroidaceaeSaprospiraceae RubrobacteriaceaeChitinophagaceae Actinobacteria;Other Flavobacteriaceae PseudonocardiaceaeCryomorphaceae PropionibacteriaceaePrevotellaceae MicromonosporaceaeBacteroidaceae Corynebacteriales;Other Rubrobacteriaceae Corynebacteriaceae Actinobacteria;Other Bifidobacteriaceae Pseudonocardiaceae Actinomycetaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae ape ae ersne. rtoatra lse ae xadd n h rsetv pe hr pyu sie sb=ust fmfml; unc=uncultured; fam=family; subs=subset; slice. phylum chart pie respective the on expanded are inc=incertae; mar=marine; gr=group. classes Proteobacteria represented. of 10% least are at in 2% > abundance samples relative with families and sample one least at in 0.5% > abundance relative with Phyla skin). and gills (feces, districts S3 figure Supplementary S. aurata samples Skin Gills Gut Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria A Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria - Pie charts summarizing the phylum (A) and family (B) level microbiota composition of composition microbiota level (B) family and (A) phylum the summarizing charts Pie - Subclasses Phyla Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria Proteobacteria;other Epsilonproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Alphaproteobacteria Other_phyla Bacteria;other Verrucomicrobia Tenericutes TM6_Dependentiae Spirochaetae Saccharibacteria Proteobacteria Planctomycetes Parcubacteria Nitrospirae Hydrogenedentes Other_Phyla Bacteria;Other Other_Phyla WS6 Bacteria;Other VerrucomicrobiaOther_Phyla Other_Phyla TenericutesWS6 Bacteria;Other Bacteria;Other TM6_Dependentiae VerrucomicrobiaWS6 WS6 SpirochaetaeTenericutesVerrucomicrobia Verrucomicrobia Saccharibacteria TM6_Dependentiae Tenericutes TenericutesSBR1093 SpirochaetaeTM6_Dependentiae TM6_Dependentiae ProteobacteriaSaccharibacteria Spirochaetae Spirochaetae Planctomycetes SBR1093 Saccharibacteria Saccharibacteria Parcubacteria ProteobacteriaSBR1093 SBR1093 Nitrospirae Planctomycetes Proteobacteria Proteobacteria Marinimicrobia_SAR406clade ParcubacteriaPlanctomycetes Planctomycetes Latescibacteria NitrospiraeParcubacteria Parcubacteria Hydrogenedentes Marinimicrobia_SAR406cladeNitrospirae Nitrospirae Gracilibacteria Latescibacteria Marinimicrobia_SAR406clade Marinimicrobia_SAR406clade Gemmatimonadetes HydrogenedentesLatescibacteria Latescibacteria Fusobacteria Gracilibacteria Hydrogenedentes Hydrogenedentes Firmicutes Gemmatimonadetes Gracilibacteria Gracilibacteria Deinococcus-Thermus Fusobacteria Gemmatimonadetes Gemmatimonadetes Cyanobacteria Firmicutes Fusobacteria Fusobacteria Chloroflexi Deinococcus-Thermus Firmicutes Firmicutes Chlorobi Cyanobacteria Deinococcus-Thermus Deinococcus-Thermus Chlamydiae ChloroflexiCyanobacteria Cyanobacteria Bacteroidetes ChlorobiChloroflexi Chloroflexi Armatimonadetes Chlamydiae Chlorobi Chlorobi Aminicenantes BacteroidetesChlamydiae Chlamydiae Actinobacteria Armatimonadetes Bacteroidetes Bacteroidetes Acidobacteria Aminicenantes Armatimonadetes Armatimonadetes Actinobacteria Aminicenantes Aminicenantes Acidobacteria Actinobacteria Actinobacteria Acidobacteria Acidobacteria Proteobacteria;Other Epsilonproteobacteria Betaproteobacteria TM6_Dependentiae Spirochaetae Saccharibacteria SBR1093 Proteobacteria Planctomycetes Parcubacteria Nitrospirae Marinimicrobia_SAR406clade Latescibacteria Hydrogenedentes Gracilibacteria Gemmatimonadetes Fusobacteria Firmicutes Deinococcus-Thermus Cyanobacteria Chloroflexi Chlorobi Chlamydiae Bacteroidetes Armatimonadetes Aminicenantes Actinobacteria Acidobacteria Other_Phyla Bacteria;Other WS6 Verrucomicrobia Tenericutes Pseudomonadaceae Spirochaetaceae Pseudomonadaceae B Comamonadaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Prevotellaceae Bacteroidaceae Actinobacteria;other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Other_families Spirochaetaceae Verrucomicrobiaceae Other_families Gammaproteobacteria;other Verrucomicrobiales;DEV007 VerrucomicrobiaceaeOther_families Xanthomonadaceae Chthoniobacterales;other Verrucomicrobiales;DEV007Verrucomicrobiaceae JTB255mar_benthic_gr Verrucomicrobia;OPB35_soil_gr;unc Chthoniobacterales;other Verrucomicrobiales;DEV007 Vibrionaceae Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;uncChthoniobacterales;other Spirochaetaceae Pseudomonadaceae Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;unc Gammaproteobacteria;other Moraxellaceae Spirochaetaceae Mycoplasmataceae Xanthomonadaceae Pasteurellaceae Gammaproteobacteria;other Spirochaetaceae JTB255mar_benthic_gr Halomonadaceae Xanthomonadaceae Gammaproteobacteria;other Vibrionaceae Enterobacteriaceae JTB255mar_benthic_gr Xanthomonadaceae Pseudomonadaceae Chromatiaceae Vibrionaceae JTB255mar_benthic_gr Moraxellaceae Pseudomonadaceae Vibrionaceae Alteromonadales;other Pasteurellaceae Moraxellaceae Pseudomonadaceae Shewanellaceae Halomonadaceae PasteurellaceaeMoraxellaceae Pseudoalteromonadaceae Enterobacteriaceae Halomonadaceae Pasteurellaceae Helicobacteraceae Chromatiaceae EnterobacteriaceaeHalomonadaceae Alteromonadales;other Deltaproteobacteria;NB1-j;unc ChromatiaceaeEnterobacteriaceae Shewanellaceae Desulfobulbaceae Alteromonadales;otherChromatiaceae Pseudoalteromonadaceae Neisseriaceae Shewanellaceae Alteromonadales;other Helicobacteraceae Oxalobacteraceae PseudoalteromonadaceaeShewanellaceae Deltaproteobacteria;NB1-j;unc Comamonadaceae PseudoalteromonadaceaeHelicobacteraceae Desulfobulbaceae Alphaproteobacteria;other Helicobacteraceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Deltaproteobacteria;NB1-j;uncSphingomonadaceae Desulfobulbaceae Oxalobacteraceae Desulfobulbaceae Neisseriaceae Alphaproteobacteria;SAR11clade;Surface1 Comamonadaceae Neisseriaceae Oxalobacteraceae Rickettsiales;SAR116clade Alphaproteobacteria;other Oxalobacteraceae Comamonadaceae Rhodospirillales;other Sphingomonadaceae Comamonadaceae Alphaproteobacteria;other Rhodospirillales_inc_sedis Alphaproteobacteria;SAR11clade;Surface1 Alphaproteobacteria;other Sphingomonadaceae Rickettsiales;SAR116clade Rhodospirillaceae Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Acetobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Rhodobacteraceae Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillaceae Rhizobiales;other Rhodospirillales;other Rhodospirillales_inc_sedis Acetobacteraceae Rhodobiaceae Rhodospirillales_inc_sedis Rhodospirillaceae Rhodobacteraceae Rhizobiaceae Rhodospirillaceae Acetobacteraceae Rhizobiales;other Acetobacteraceae Rhodobacteraceae Phyllobacteriaceae Rhodobiaceae Rhodobacteraceae Rhizobiales;other Rhizobiales;MNG7 Rhizobiaceae Rhizobiales;other Rhodobiaceae Hyphomicrobiaceae Phyllobacteriaceae Rhodobiaceae Rhizobiaceae Bradyrhizobiaceae Rhizobiales;MNG7 Rhizobiaceae Phyllobacteriaceae Hyphomicrobiaceae Planctomycetaceae Phyllobacteriaceae Rhizobiales;MNG7 Bradyrhizobiaceae Nitrospiraceae Rhizobiales;MNG7 Hyphomicrobiaceae Planctomycetaceae Fusobacteriaceae Hyphomicrobiaceae Bradyrhizobiaceae Nitrospiraceae Veillonellaceae Bradyrhizobiaceae Planctomycetaceae Fusobacteriaceae Erysipelotrichaceae Planctomycetaceae Nitrospiraceae Veillonellaceae Clostridiales;other Nitrospiraceae Fusobacteriaceae Erysipelotrichaceae Fusobacteriaceae Peptostreptococcaceae Veillonellaceae Clostridiales;other Veillonellaceae Erysipelotrichaceae Lachnospiraceae Peptostreptococcaceae Erysipelotrichaceae Clostridiales;other Clostridiales;famXII Lachnospiraceae Clostridiales;other Peptostreptococcaceae Clostridiales;famXI Clostridiales;famXII Peptostreptococcaceae Lachnospiraceae Clostridiales;famXI Clostridiaceae1 Lachnospiraceae Clostridiales;famXII Clostridiaceae1 Streptococcaceae Clostridiales;famXII Clostridiales;famXI Streptococcaceae Lactobacillaceae Clostridiales;famXI Clostridiaceae1 Lactobacillaceae Enterococcaceae Clostridiaceae1 Streptococcaceae Enterococcaceae Carnobacteriaceae Streptococcaceae Lactobacillaceae Carnobacteriaceae Staphylococcaceae Lactobacillaceae Enterococcaceae Staphylococcaceae Bacillales;famXI Enterococcaceae Carnobacteriaceae Bacillales;famXI Carnobacteriaceae Bacillaceae Staphylococcaceae Bacillaceae Staphylococcaceae Bacillales;famXI Obscuribacterales;unc Obscuribacterales;unc Bacillales;famXI Bacillaceae Cyanobacteria;subsIII;famI Cyanobacteria;subsIII;famI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsII;famII Cyanobacteria;subsII;famII Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsI;famI Cyanobacteria;subsI;famI Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Caldilineaceae Caldilineaceae Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Sphingobacteriales;envOPS17 Sphingobacter Vibrionaceae Moraxellaceae Fusobacteriaceae Corynebacteriaceae Shewanellaceae Clostridiales;familyXI Staphylococcaceae Clostridiaceae1 Flavobacteriaceae Comamonadaceae Propionibacteriaceae Sphingomonadaceae Streptococcaceae Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Verrucomicrobiaceae Other_families Verrucomicrobiales;DEV007 Verrucomicrobiaceae Chthoniobacterales;other Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Chthoniobacterales;other Mycoplasmataceae Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Mycoplasmataceae Gammaproteobacteria;other Spirochaetaceae Xanthomonadaceae Gammaproteobacteria;other JTB255mar_benthic_gr Xanthomonadaceae Vibrionaceae JTB255mar_benthic_gr Pseudomonadaceae Vibrionaceae Moraxellaceae Pseudomonadaceae Pasteurellaceae Moraxellaceae Halomonadaceae Pasteurellaceae Enterobacteriaceae Halomonadaceae Chromatiaceae Enterobacteriaceae Alteromonadales;other Chromatiaceae Shewanellaceae Alteromonadales;other Pseudoalteromonadaceae Shewanellaceae Helicobacteraceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Helicobacteraceae Desulfobulbaceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Desulfobulbaceae Oxalobacteraceae Neisseriaceae Comamonadaceae Oxalobacteraceae Alphaproteobacteria;other Comamonadaceae Sphingomonadaceae Alphaproteobacteria;other Alphaproteobacteria;SAR11clade;Surface1 Sphingomonadaceae Rickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Rhodospirillales;other Rhodospirillaceae Rhodospirillales_inc_sedis Acetobacteraceae Rhodospirillaceae Rhodobacteraceae Acetobacteraceae Rhizobiales;other Rhodobacteraceae Rhodobiaceae Rhizobiales;other Rhizobiaceae Rhodobiaceae Phyllobacteriaceae Rhizobiaceae Rhizobiales;MNG7 Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Hyphomicrobiaceae Bradyrhizobiaceae Bradyrhizobiaceae Planctomycetaceae Planctomycetaceae Nitrospiraceae Nitrospiraceae Fusobacteriaceae Fusobacteriaceae Veillonellaceae Veillonellaceae Erysipelotrichaceae Erysipelotrichaceae Clostridiales;other Clostridiales;other Peptostreptococcaceae Peptostreptococcaceae Lachnospiraceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXII Clostridiales;famXI Clostridiales;famXI Clostridiaceae1 Clostridiaceae1 Streptococcaceae Streptococcaceae Lactobacillaceae Lactobacillaceae Enterococcaceae Enterococcaceae Carnobacteriaceae Carnobacteriaceae Staphylococcaceae Staphylococcaceae Bacillales;famXI Bacillales;famXI Bacillaceae Bacillaceae Obscuribacterales;unc Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Cyanobacteria;subsI;famI Caldilineaceae Caldilineaceae Sphingobacteriales;envOPS17 Sphingobacteriales;envOPS17 Saprospiraceae Saprospiraceae Chitinophagaceae Chitinophagaceae Flavobacteriaceae Flavobacteriaceae Cryomorphaceae Cryomorphaceae Prevotellaceae Prevotellaceae Bacteroidaceae Bacteroidaceae Rubrobacteriaceae Rubrobacteriaceae Actinobacteria;Other Actinobacteria;Other Pseudonocardiaceae Pseudonocardiaceae Propionibacteriaceae Propionibacteriaceae Micromonosporaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriales;Other Corynebacteriaceae Corynebacteriaceae Bifidobacteriaceae Bifidobacteriaceae Actinomycetaceae Actinomycetaceae Sphingomonadaceae Rhodospirillales;inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceaea Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Other_families Verrucomicrobiaceae Other_families Verrucomicrobiales;DEV007 Other_families Verrucomicrobiaceae Chthoniobacterales;other Verrucomicrobiaceae Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Verrucomicrobiales;DEV007 Chthoniobacterales;other Mycoplasmataceae Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Gammaproteobacteria;other Mycoplasmataceae Spirochaetaceae Xanthomonadaceae Spirochaetaceae Gammaproteobacteria;other JTB255mar_benthic_gr Gammaproteobacteria;other Xanthomonadaceae VibrionaceaeXanthomonadaceae JTB255mar_benthic_gr JTB255mar_benthic_gr Pseudomonadaceae Vibrionaceae Vibrionaceae Moraxellaceae Pseudomonadaceae Pseudomonadaceae Pasteurellaceae Moraxellaceae Moraxellaceae Halomonadaceae Pasteurellaceae Pasteurellaceae Enterobacteriaceae Halomonadaceae Halomonadaceae Chromatiaceae Enterobacteriaceae Enterobacteriaceae Alteromonadales;other Chromatiaceae Chromatiaceae Shewanellaceae Alteromonadales;other Alteromonadales;other Pseudoalteromonadaceae Shewanellaceae Shewanellaceae Helicobacteraceae Pseudoalteromonadaceae Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Helicobacteraceae Helicobacteraceae Desulfobulbaceae Deltaproteobacteria;NB1-j;unc Deltaproteobacteria;NB1-j;unc Neisseriaceae Desulfobulbaceae Desulfobulbaceae Oxalobacteraceae Neisseriaceae Neisseriaceae Comamonadaceae Oxalobacteraceae Oxalobacteraceae Alphaproteobacteria;otherComamonadaceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiales;famXII Clostridiales;famXI Clostridiales;famXI Clostridiaceae1 Clostridiaceae1 Clostridiaceae1 Streptococcaceae Streptococcaceae Streptococcaceae Lactobacillaceae Lactobacillaceae Lactobacillaceae EnterococcaceaeEnterococcaceae Enterococcaceae Carnobacteriaceae Carnobacteriaceae Carnobacteriaceae Staphylococcaceae Staphylococcaceae Staphylococcaceae Bacillales;famXI Bacillales;famXI Bacillales;famXI Bacillaceae Bacillaceae Bacillaceae Obscuribacterales;unc Obscuribacterales;unc Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsIII;famI Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Saprospiraceae Chitinophagaceae Flavobacteriaceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Bifidobacteriaceae Actinomycetaceae Actinomycetaceae Families Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Moraxellaceae S. aurata S. Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Gammaproptebacteria;other Xanthomonadaceae Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Deltaproteobacteria;NB-j;unc Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Other_families Chthoniobacterales;other VerrucomicrobiaceaeVerrucomicrobia;OPB35_soil_gr;unc Verrucomicrobiales;DEV007Mycoplasmataceae Chthoniobacterales;other Spirochaetaceae Verrucomicrobia;OPB35_soil_gr;uncGammaproteobacteria;other Xanthomonadaceae Mycoplasmataceae JTB255mar_benthic_gr Spirochaetaceae Vibrionaceae Gammaproteobacteria;other Pseudomonadaceae Xanthomonadaceae Moraxellaceae JTB255mar_benthic_gr Pasteurellaceae Vibrionaceae Halomonadaceae Pseudomonadaceae Enterobacteriaceae Moraxellaceae Chromatiaceae Pasteurellaceae Alteromonadales;other Halomonadaceae Shewanellaceae Enterobacteriaceae Pseudoalteromonadaceae Chromatiaceae Helicobacteraceae Alteromonadales;other Deltaproteobacteria;NB1-j;unc Shewanellaceae Desulfobulbaceae Pseudoalteromonadaceae Neisseriaceae Helicobacteraceae Oxalobacteraceae Deltaproteobacteria;NB1-j;unc Comamonadaceae Desulfobulbaceae Alphaproteobacteria;other Neisseriaceae Sphingomonadaceae Oxalobacteraceae Alphaproteobacteria;SAR11clade;Surface1 Comamonadaceae Rickettsiales;SAR116clade Alphaproteobacteria;other Rhodospirillales;other Sphingomonadaceae Rhodospirillales_inc_sedis Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillaceae Rickettsiales;SAR116clade Acetobacteraceae Rhodospirillales;other Rhodobacteraceae Rhodospirillales_inc_sedis Rhizobiales;other Rhodospirillaceae Rhodobiaceae Acetobacteraceae Rhizobiaceae Rhodobacteraceae Phyllobacteriaceae Rhizobiales;other Rhizobiales;MNG7 Rhodobiaceae Hyphomicrobiaceae Rhizobiaceae Bradyrhizobiaceae Phyllobacteriaceae Planctomycetaceae Rhizobiales;MNG7 Nitrospiraceae Hyphomicrobiaceae Fusobacteriaceae Bradyrhizobiaceae Veillonellaceae Planctomycetaceae Erysipelotrichaceae Nitrospiraceae Clostridiales;other Fusobacteriaceae Peptostreptococcaceae Veillonellaceae Lachnospiraceae Erysipelotrichaceae Clostridiales;famXII Clostridiales;other Clostridiales;famXI Peptostreptococcaceae Clostridiaceae1 Lachnospiraceae Streptococcaceae Clostridiales;famXII Lactobacillaceae Clostridiales;famXI Enterococcaceae Clostridiaceae1 Carnobacteriaceae Streptococcaceae Staphylococcaceae Lactobacillaceae Bacillales;famXI Enterococcaceae Bacillaceae Carnobacteriaceae Obscuribacterales;unc Staphylococcaceae Cyanobacteria;subsIII;famI Bacillales;famXI Cyanobacteria;subsII;famII Bacillaceae Cyanobacteria;subsI;famI Obscuribacterales;unc Caldilineaceae Cyanobacteria;subsIII;famI Sphingobacteriales;envOPS17 Cyanobacteria;subsII;famII Saprospiraceae Cyanobacteria;subsI;famI Chitinophagaceae Caldilineaceae Flavobacteriaceae Sphingobacteriales;envOPS17 Cryomorphaceae Saprospiraceae Prevotellaceae Chitinophagaceae Bacteroidaceae Flavobacteriaceae Rubrobacteriaceae Cryomorphaceae Actinobacteria;Other Prevotellaceae Pseudonocardiaceae Bacteroidaceae Propionibacteriaceae Rubrobacteriaceae Micromonosporaceae Actinobacteria;Other Corynebacteriales;Other Pseudonocardiaceae Corynebacteriaceae Propionibacteriaceae Bifidobacteriaceae Micromonosporaceae Actinomycetaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Other_families Other_families Verrucomicrobiaceae Verrucomicrobiaceae Verrucomicrobiales;DEV007 Other_families Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobiaceae Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Verrucomicrobiales;DEV007 Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Chthoniobacterales;other Mycoplasmataceae Spirochaetaceae Verrucomicrobia;OPB35_soil_gr;unc Spirochaetaceae Gammaproteobacteria;other Mycoplasmataceae Gammaproteobacteria;other Xanthomonadaceae Spirochaetaceae Xanthomonadaceae JTB255mar_benthic_gr Gammaproteobacteria;other JTB255mar_benthic_gr Vibrionaceae Xanthomonadaceae Vibrionaceae Pseudomonadaceae JTB255mar_benthic_gr Pseudomonadaceae Moraxellaceae Vibrionaceae Moraxellaceae Pasteurellaceae Pseudomonadaceae Pasteurellaceae Halomonadaceae Moraxellaceae Halomonadaceae Enterobacteriaceae Pasteurellaceae Enterobacteriaceae Chromatiaceae Halomonadaceae Chromatiaceae Alteromonadales;other Enterobacteriaceae Alteromonadales;other Shewanellaceae Chromatiaceae Shewanellaceae Pseudoalteromonadaceae Alteromonadales;other Pseudoalteromonadaceae Helicobacteraceae Shewanellaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Pseudoalteromonadaceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Helicobacteraceae Desulfobulbaceae Neisseriaceae Deltaproteobacteria;NB1-j;unc Neisseriaceae Oxalobacteraceae Desulfobulbaceae Oxalobacteraceae Comamonadaceae Neisseriaceae Comamonadaceae Alphaproteobacteria;other Oxalobacteraceae Alphaproteobacteria;otherSphingomonadaceae Comamonadaceae Alphaproteobacteria;SAR11clade;Surface1Sphingomonadaceae Alphaproteobacteria;otherRickettsiales;SAR116clade Alphaproteobacteria;SAR11clade;Surface1 Rhodospirillales;other Sphingomonadaceae Rickettsiales;SAR116clade Rhodospirillales_inc_sedis Alphaproteobacteria;SAR11clade;Surface1Rhodospirillales;other Rhodospirillaceae Rhodospirillales_inc_sedis Rickettsiales;SAR116clade Acetobacteraceae Rhodospirillaceae Rhodospirillales;other Rhodobacteraceae Acetobacteraceae Rhodospirillales_inc_sedis Rhizobiales;other Rhodobacteraceae Rhodospirillaceae Rhodobiaceae Rhizobiales;other Acetobacteraceae Rhizobiaceae Rhodobiaceae Rhodobacteraceae Phyllobacteriaceae Rhizobiaceae Rhizobiales;other Rhizobiales;MNG7 Phyllobacteriaceae Rhodobiaceae Hyphomicrobiaceae Rhizobiales;MNG7 Rhizobiaceae Bradyrhizobiaceae Hyphomicrobiaceae Phyllobacteriaceae Planctomycetaceae Bradyrhizobiaceae Rhizobiales;MNG7 Nitrospiraceae Planctomycetaceae Hyphomicrobiaceae Fusobacteriaceae Nitrospiraceae Bradyrhizobiaceae Veillonellaceae Fusobacteriaceae Planctomycetaceae Erysipelotrichaceae Veillonellaceae Nitrospiraceae Clostridiales;other Erysipelotrichaceae Fusobacteriaceae Peptostreptococcaceae Clostridiales;other Veillonellaceae Lachnospiraceae Peptostreptococcaceae Erysipelotrichaceae Clostridiales;famXII Lachnospiraceae Clostridiales;other Clostridiales;famXI Clostridiales;famXII Peptostreptococcaceae Clostridiaceae1 Clostridiales;famXI Lachnospiraceae Streptococcaceae Clostridiaceae1 Clostridiales;famXII Lactobacillaceae Streptococcaceae Clostridiales;famXI Enterococcaceae Lactobacillaceae Clostridiaceae1 Carnobacteriaceae Enterococcaceae Streptococcaceae Staphylococcaceae Carnobacteriaceae Lactobacillaceae Bacillales;famXI Staphylococcaceae Enterococcaceae Bacillaceae Bacillales;famXI Carnobacteriaceae Obscuribacterales;unc Bacillaceae Staphylococcaceae Cyanobacteria;subsIII;famI Obscuribacterales;unc Bacillales;famXI Cyanobacteria;subsII;famII Cyanobacteria;subsIII;famI Bacillaceae Cyanobacteria;subsI;famI Cyanobacteria;subsII;famII Obscuribacterales;unc Caldilineaceae Cyanobacteria;subsI;famI Cyanobacteria;subsIII;famI Sphingobacteriales;envOPS17 Caldilineaceae Cyanobacteria;subsII;famII Saprospiraceae Sphingobacteriales;envOPS17 Cyanobacteria;subsI;famI Chitinophagaceae Saprospiraceae Caldilineaceae Flavobacteriaceae Chitinophagaceae Sphingobacteriales;envOPS17 Cryomorphaceae Flavobacteriaceae Saprospiraceae Prevotellaceae Cryomorphaceae Chitinophagaceae Bacteroidaceae Prevotellaceae Flavobacteriaceae Rubrobacteriaceae Bacteroidaceae Cryomorphaceae Actinobacteria;Other Rubrobacteriaceae Prevotellaceae Pseudonocardiaceae Actinobacteria;Other Bacteroidaceae Propionibacteriaceae Pseudonocardiaceae Rubrobacteriaceae Micromonosporaceae Propionibacteriaceae Actinobacteria;Other Corynebacteriales;Other Micromonosporaceae PseudonocardiaceaeCorynebacteriaceae Corynebacteriales;Other Bifidobacteriaceae Propionibacteriaceae Corynebacteriaceae Actinomycetaceae Micromonosporaceae Bifidobacteriaceae Corynebacteriales;Other Actinomycetaceae Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae samples in the three fish three the in samples Halomonadaceae Sphingomonadaceae alteromonadaceae Pseudo- Other_families Verrucomicrobiaceae Verrucomicrobiales;DEV007 Chthoniobacterales;other Verrucomicrobia;OPB35_soil_gr;unc Mycoplasmataceae Spirochaetaceae Gammaproteobacteria;other Xanthomonadaceae JTB255mar_benthic_gr Vibrionaceae Pseudomonadaceae Moraxellaceae Pasteurellaceae Halomonadaceae Enterobacteriaceae Chromatiaceae Alteromonadales;other Shewanellaceae Pseudoalteromonadaceae Helicobacteraceae Deltaproteobacteria;NB1-j;unc Desulfobulbaceae Neisseriaceae Oxalobacteraceae Comamonadaceae Alphaproteobacteria;other Sphingomonadaceae Alphaproteobacteria;SAR11clade;Surface1 Rickettsiales;SAR116clade Rhodospirillales;other Rhodospirillales_inc_sedis Rhodospirillaceae Acetobacteraceae Rhodobacteraceae Rhizobiales;other Rhodobiaceae Rhizobiaceae Phyllobacteriaceae Rhizobiales;MNG7 Hyphomicrobiaceae Bradyrhizobiaceae Planctomycetaceae Nitrospiraceae Fusobacteriaceae Veillonellaceae Erysipelotrichaceae Clostridiales;other Peptostreptococcaceae Lachnospiraceae Clostridiales;famXII Clostridiales;famXI Clostridiaceae1 Streptococcaceae Lactobacillaceae Enterococcaceae Carnobacteriaceae Staphylococcaceae Bacillales;famXI Bacillaceae Obscuribacterales;unc Cyanobacteria;subsIII;famI Cyanobacteria;subsII;famII Cyanobacteria;subsI;famI Caldilineaceae Sphingobacteriales;envOPS17 Saprospiraceae Chitinophagaceae Flavobacteriaceae Cryomorphaceae Prevotellaceae Bacteroidaceae Rubrobacteriaceae Actinobacteria;Other Pseudonocardiaceae Propionibacteriaceae Micromonosporaceae Corynebacteriales;Other Corynebacteriaceae Bifidobacteriaceae Actinomycetaceae Control site r.a. (%) Aquaculture site r.a. (%) OTU_ID BLAST p-value P. caerulea Sediment Seawater P. caerulea Sediment Seawater Fish 4667 Fodinicurvata halophila 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.004 11135 Lactobacillus johnsonii 0.10 0.00 0.00 0.04 0.00 0.00 0.00 0.05 4454 Fluviibacterium aquatile 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.0004 5034 Robiginitalea biformata 0.06 0.02 0.00 0.00 0.00 0.00 0.00 0.03 12220 Rhodobacteraceae 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.0001 1496 Agaricicola taiwanensis 0.48 0.00 0.00 0.02 0.00 0.00 0.00 0.01 4069 Amorphus coralli 0.10 0.00 0.00 0.01 0.00 0.00 0.00 0.02 4330 Ochrobactrum oryzae 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.02 14127 Rubinisphaera brasiliensis 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.02 5331 Roseibacillus ponti 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.0008 2911 Actibacter sediminis 0.29 0.03 0.00 0.00 0.13 0.00 0.00 0.0004 2289 Psychrobacter celer 0.03 0.00 0.17 0.00 0.00 0.07 0.06 0.008

Control site Control 14154 Phyllobacterium 0.20 0.00 0.00 0.06 0.00 0.00 0.00 0.04 3304 Stappia taiwanensis 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00002 11232 Rubinisphaera italica 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.03 1355 Prochlorococcus marinus 0.02 0.02 1.18 0.00 0.01 1.88 0.01 0.007 11155 Lactobacillus rhamnosus 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.006 14091 Bifidobacterium bifidum 0.83 0.00 0.00 0.02 0.00 0.00 0.00 0.003 11445 Ahrensia kielensis 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.0007 3555 Bifidobacterium longum 0.50 0.00 0.00 0.01 0.00 0.00 0.00 0.0004 2120 Photobacterium swingsii 0.23 0.02 0.00 0.01 0.00 0.00 0.00 0.003 4234 Hyphomicrobium 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.03 4187 Phyllobacteriaceae 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.0003 11247 Rhodopirellula 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.03 11243 Alienimonas californiensis 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.001 11205 Wenxinia marina 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.003 6912 Mycoplasma mobile 0.45 0.00 0.00 2.92 0.00 0.00 0.00 0.0004 5244 Acinetobacter guillouiae 0.03 0.00 0.00 0.16 0.00 0.00 0.00 0.04 4203 Mesorhizobium thiogangeticum 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.003 2259 Mycoplasma mobile 0.02 0.00 0.00 0.19 0.00 0.00 0.00 0.002 4097 Mesorhizobium camelthorni 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.0002 2073 Halomonas 0.05 0.00 0.00 0.18 0.00 0.00 0.00 0.05 Supplementary table S1 - Ecological 12731 Sphingomonas 0.37 0.00 0.00 1.96 0.00 0.00 0.00 0.001 distribution and highest score alignment 11913 Sphingomonas 0.06 0.00 0.00 0.40 0.00 0.00 0.00 0.0006 against NCBI 16S rRNA database of 4065 Sulfitobacter pontiacus 0.00 0.00 0.03 0.20 0.00 0.00 0.00 0.03 4965 Rhodopirellula baltica 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.03 OTUs showing a significantly higher 2118 Vibrio atypicus 0.42 0.01 0.00 0.63 0.00 0.00 0.00 0.02 mean relative abundance in the limpets 1919 Staphylococcus 0.01 0.01 0.01 0.06 0.00 0.01 0.39 0.04 collected from control site with respect Aquaculture site Aquaculture 2077 Mycoplasma mobile 0.05 0.00 0.00 0.33 0.00 0.00 0.00 0.005 to those from the aquaculture cage and 2154 Mycoplasma mobile 0.03 0.00 0.00 0.16 0.00 0.00 0.00 0.002 11213 Rubinisphaera italica 0.01 0.00 0.00 0.27 0.00 0.00 0.00 0.005 vice versa. P-values were calculated for 1397 Foliisarcina bertiogensis 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.002 the two P. caerulea groups (control vs. 11152 Bacteroides 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.006 aquaculture, FDR-corrected Wilcoxon 2080 Psychrobacter marincola 0.00 0.00 0.19 0.13 0.00 0.03 0.00 0.02 14234 Sulfurovum lithotrophicum 0.00 0.82 0.00 0.01 0.08 0.00 0.00 0.01 rank-sum test, p-value ≤ 0.05). Species, 4465 Phyllobacteriaceae 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.0001 genera or families are retrieved on the 4305 Marimonas arenosa 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.04 BLAST column based on the last 6020 Pseudomonas 0.00 0.00 0.00 0.07 0.00 0.00 0.08 0.01 3237 Bythopirellula goksoyri 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.03 common taxonomic level shared 6006 Gimesia maris 0.02 0.00 0.00 0.14 0.00 0.00 0.00 0.05 between all BLAST best hits. Supplementary table S2 - Seawater environmental data. Measurements (N = 6 per site) are shown for the control and aquaculture sites. Measured parameters, namely T, pH, TA and salinity (38‰ in control and 34‰ in the in the aquaculture site) were used to calculate the carbonate chemistry parameters through CO2SYS Software. T = Temperature; TA = Total Alkalinity; pCO2 = carbon dioxide partial pressure; HCO3— = bicarbonate; CO32— = carbonate; DIC = dissolved inorganic carbon; Ωarag = aragonite saturation; NS = not significant; **p<0.01, Mann-Whitney test. In brackets the 95% confidence interval.

- 2- TA pCO2 HCO3 CO3 DIC T (°C) pHNBS Ωarag (μmol kg-1) (μatm) (μmol kg-1) (μmol kg-1) (μmol kg-1) 27.3 8.02 2319 667 1898 170 2086 2.67

Control (26.9-27.6) (8.00-8.04) (2315-2324) (620-714) (1882-1914) (164-177) (2075-2097) (2.57-2.76)

24.8 7.96 2203 700 1877 132.1 2030 2.11

Aquaculture (24.7-24.9) (7.95-7.97) (2191-2213) (682-717) (1872-1883) (130-134) (2026-2033) (2.07-2.14) Mann- ** ** ** NS ** ** ** ** Whitney