The Ecology of Ectomycorrhizal Fungi
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Preface to Artificial Key to Common and Noteworthy Species of Inocybe from the Pacific Northwest
Preface to Artificial Key to Common and Noteworthy Species of Inocybe from the Pacific Northwest This key is aimed at an audience familiar with the determination of agarics in general but unfamiliar with Inocybe. The key stresses gross morphological characters as I think appropriate before yielding to taxa that are better distinguished microscopically. 43 species are enumerated below and several others are mentioned, but probably over 100 occur in the Pacific Northwest, a region circumscribed to include British Columbia, Washington, Idaho, western Montana, Oregon, and northern California. Of the 43 species in the key, few are endemic to the region based on gross morphological species concepts. However, the key is recommended for use with Pacific Northwest material. Many eastern North American species of Inocybe, for example, do not occur in the Pacific Northwest and are excluded from this treatment. The genus Inocybe (Fr.) Fr. traditionally has encompassed dull brown-spored agarics that are ectomycorrhizal and frequently occur on soil; exhibit a dry pileus that is often rimose, fibrillose, or scaly; and have a distinctive smell that is often spermatic or less often fruity, sweet, aromatic, like bruised Geranium leaves, like Lycoperdon, or green corn. Species of Hebeloma differ by their gelatinous pileus, often radish smell, typically verrucose basidiospores, and absence of metuloid cystidia. Decomposers such as Phaeomarasmius and Flammulaster differ by their occurrence on woody debris and lack of metuloid cystidia. The Crepidotaceae, including Pleuroflammula and Simocybe, is the closest related group to Inocybe, which I treat as a separate family in its own right (see Matheny et al. (2006) Mycologia 98:982- 995). -
Community Assembly and Coexistence in Communities of Arbuscular Mycorrhizal Fungi
The ISME Journal (2016) 10, 2341–2351 OPEN © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej MINI REVIEW Community assembly and coexistence in communities of arbuscular mycorrhizal fungi Kriszta Vályi1,2, Ulfah Mardhiah1,2, Matthias C Rillig1,2 and Stefan Hempel1,2 1Department of Plant Ecology, Institut für Biologie, Freie Universität Berlin, Berlin, Germany and 2Berlin- Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany Arbuscular mycorrhizal fungi are asexual, obligately symbiotic fungi with unique morphology and genomic structure, which occupy a dual niche, that is, the soil and the host root. Consequently, the direct adoption of models for community assembly developed for other organism groups is not evident. In this paper we adapted modern coexistence and assembly theory to arbuscular mycorrhizal fungi. We review research on the elements of community assembly and coexistence of arbuscular mycorrhizal fungi, highlighting recent studies using molecular methods. By addressing several points from the individual to the community level where the application of modern community ecology terms runs into problems when arbuscular mycorrhizal fungi are concerned, we aim to account for these special circumstances from a mycocentric point of view. We suggest that hierarchical spatial structure of arbuscular mycorrhizal fungal communities should be explicitly taken into account in future studies. The conceptual framework we develop here for arbuscular mycorrhizal fungi is also adaptable for other host-associated microbial communities. The ISME Journal (2016) 10, 2341–2351; doi:10.1038/ismej.2016.46; published online 19 April 2016 Introduction: applying models of which the members of local communities are selected community assembly and contemporary by passing through environmental and biotic filters. -
Host Specificity, Mycorrhizal Compatibility and Genetic Variability of Pisolithus Tinctorius Hemavathi Bobbu
International Journal of Advanced Engineering, Management and Science (IJAEMS) [Vol-2, Issue-11, Nov- 2016] Infogain Publication (Infogainpublication.com) ISSN : 2454-1311 Host specificity, mycorrhizal compatibility and genetic variability of Pisolithus tinctorius Hemavathi Bobbu Department of Biology, IIIT RK Valley, RGUKT-AP, India Abstract– The reaction between the various hosts with fungi rely upon basidiospores, mycelial fragmentation, Pisolithus tinctorius shows the broad host range of this mitotic sporulation and, occasionally, sclerotia as their fungal species showing different degrees of host major, means of dispersal and reproduction (Dahlberg & compatibility. There is wide variation in both rate and Stenlid 1995). Each species exists, as a population of many extent of ECM formation by different isolates of Pisolithus genetic individuals, so-called genets, between which there is tinctorius of different geographical regions within a almost invariably some phenotypic variation. Each genet species. Thus Pisolithus tinctorius displays much arises in a unique mating event and then vegetatively intraspecific heterogeneity of host specificity and expands as a host root-connected mycelium throughout the interspecific compatibility. There are variable degrees of humus layer of forest soils (Debaud et al., 1999). The fact plant-fungal isolate compatibility, implying specificity, and that trees are exposed to genetically diverse mycobionts is this is an important factor influencing successful an important consideration in forest ecology. Genets vary in ectomycorrhiza formation and development. The molecular their ability to colonize different genotypes of host plant, data also suggested that the Pisolithus tinctorius isolates their ability to promote plant growth and adaptation to analyzed from different geographical regions belong to abiotic factors, such as organic/inorganic nitrogen distinct groups. -
Mycorrhiza Helper Bacterium Streptomyces Ach 505 Induces
Research MycorrhizaBlackwell Publishing, Ltd. helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria Silvia D. Schrey, Michael Schellhammer, Margret Ecke, Rüdiger Hampp and Mika T. Tarkka University of Tübingen, Faculty of Biology, Institute of Botany, Physiological Ecology of Plants, Auf der Morgenstelle 1, D-72076 Tübingen, Germany Summary Author for correspondence: • The interaction between the mycorrhiza helper bacteria Streptomyces nov. sp. Mika Tarkka 505 (AcH 505) and Streptomyces annulatus 1003 (AcH 1003) with fly agaric Tel: +40 7071 2976154 (Amanita muscaria) and spruce (Picea abies) was investigated. Fax: +49 7071 295635 • The effects of both bacteria on the mycelial growth of different ectomycorrhizal Email: [email protected] fungi, on ectomycorrhiza formation, and on fungal gene expression in dual culture Received: 3 May 2005 with AcH 505 were determined. Accepted: 16 June 2005 • The fungus specificities of the streptomycetes were similar. Both bacterial species showed the strongest effect on the growth of mycelia at 9 wk of dual culture. The effect of AcH 505 on gene expression of A. muscaria was examined using the suppressive subtractive hybridization approach. The responsive fungal genes included those involved in signalling pathways, metabolism, cell structure, and the cell growth response. • These results suggest that AcH 505 and AcH 1003 enhance mycorrhiza formation mainly as a result of promotion of fungal growth, leading to changes in fungal gene expression. Differential A. muscaria transcript accumulation in dual culture may result from a direct response to bacterial substances. Key words: acetoacyl coenzyme A synthetase, Amanita muscaria, cyclophilin, ectomycorrhiza, mycorrhiza helper bacteria, streptomycetes, suppression subtractive hybridization (SSH). -
Early Growth Improvement on Endemic Tree Species by Soil Mycorrhizal Management in Madagascar
In: From Seed Germination to Young Plants: Ecology, Growth and Environmental Influences Editor: Carlos Alberto Busso (Universidad Nacional del Sur, Buenos Aires, Argentina) 2013 Nova Science Publishers, Inc. ISBN: 978-1-62618-676-7 Chapter 15 EARLY GROWTH IMPROVEMENT ON ENDEMIC TREE SPECIES BY SOIL MYCORRHIZAL MANAGEMENT IN MADAGASCAR H. Ramanankierana1, R. Baohanta1, J. Thioulouse2, Y. Prin3, H. Randriambanona1, E. Baudoin4, N. Rakotoarimanga1, A. Galiana3, E. Rajaonarimamy1, M. Lebrun4 and Robin Duponnois4,5,* 1Laboratoire de Microbiologie de l’Environnement. Centre National de Recherches sur l’Environnement. BP 1739 Antananarivo. Madagascar; 2Université de Lyon, F-69000, Lyon ; Université Lyon 1 ; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622, Villeurbanne, France; 3CIRAD. Laboratoire des Symbioses Tropicales et Méditerranéennes (LSTM), UMR 113 CIRAD/INRA/IRD/SupAgro/UM2, Campus International de Baillarguet, TA A-82/J, Montpellier, France; 4IRD. Laboratoire des Symbioses Tropicales et Méditerranéennes (LSTM), UMR 113 CIRAD/INRA/IRD/SupAgro/UM2, Campus International de Baillarguet, TA A-82/J, Montpellier, France; 5Laboratoire Ecologie & Environnement (Unité associée au CNRST, URAC 32). Faculté des Sciences Semlalia. Université Cadi Ayyad. Marrakech. Maroc Abstract Mycorrhizal fungi are ubiquitous components of most ecosystems throughout the world and are considered key ecological factors in (1) governing the cycles of major plant nutrients and (2) sustaining the vegetation cover. Two major forms of mycorrhizas are usually recognized: the arbuscular mycorrhizas (AM) and the ectomycorrhizas (ECM). The lack of mycorrhizal fungi on root systems is a leading cause of poor plant establishment and growth in a variety of forest landscapes. Numerous studies have shown that mycorrhizal fungi are * E-mail address: [email protected] Ramanankierana et al. -
Ectomycorrhizal Community Structure and Fi,Mction 2000
Ectomycorrhizal community structure and fi,mction in relation to forest residue harvesting and wood ash applications Shahid Mahmood LUND UNIVERSITY Dissertation 2000 A doctoral thesis at a university in Sweden is produced either as a monograph or as a collection of papers. In the latter case, the introducto~ part constitutes the formal thesis, which summarises the accompanying papers. These have either already been published or are manuscripts at various stages (in press, submitted or in ins). ISBN9!-7105-138-8 sE-LuNBDs/NBME-oo/lo14+l10pp 02000 Shahid Mahmood Cover drawing: Peter Robemtz I DISCLAIMER Portions of this document may be illegible in electronic image products. Images are produced from the best available original document. Organhtion Documentname LUND UNIVERSITY I DOCTORALDISSERTATION Department of Ecology- Mtcrobial Ecology I “eda fday16,20@ Ecology Building, S-223 62 Lund, Sweden I coDfw SE-LUNBDSINBME-OOI1 OI4+I 10 pp Author(a) sponsoringOrgmiration Shahid Mahmood T&feandsubtitls Eotomycorhkal community structure and function in relation to forest residue hawesting and wood ash applications Ectomycorrhizal fungi form symbiotic associations with tree roots and assist in nutrient-uptake and -cycling in forest ecosystems, thereby constitutinga most significantpart of the microbial community. The aims of the studies described in this thesis were to evaluate the potential of DNA-baeed molecular methods in below-ground ectomycorrhizal community studies and to investigate changes in actomycortilzal communities on spruce roots in sites with different N deposition, and in sites subjected to harvesting of forest rasidues or application of wood ash. The ability of selected ectomycorrhizal fungi to mobilise nutriente from wood ash and to colonise root systems in the presence and absence of ash was also studied. -
Herbariet Publ 2010-2019 (PDF)
Publikationer 2019 Amorim, B. S., Vasconcelos, T. N., Souza, G., Alves, M., Antonelli, A., & Lucas, E. (2019). Advanced understanding of phylogenetic relationships, morphological evolution and biogeographic history of the mega-diverse plant genus Myrcia and its relatives (Myrtaceae: Myrteae). Molecular phylogenetics and evolution, 138, 65-88. Anderson, C. (2019). Hiraea costaricensis and H. polyantha, Two New Species Of Malpighiaceae, and circumscription of H. quapara and H. smilacina. Edinburgh Journal of Botany, 1-16. Athanasiadis, A. (2019). Carlskottsbergia antarctica (Hooker fil. & Harv.) gen. & comb. nov., with a re-assessment of Synarthrophyton (Mesophyllaceae, Corallinales, Rhodophyta). Nova Hedwigia, 108(3-4), 291-320. Athanasiadis, A. (2019). Amphithallia, a genus with four-celled carpogonial branches and connecting filaments in the Corallinales (Rhodophyta). Marine Biology Research, 15(1), 13-25. Bandini, D., Oertel, B., Moreau, P. A., Thines, M., & Ploch, S. (2019). Three new hygrophilous species of Inocybe, subgenus Inocybe. Mycological Progress, 18(9), 1101-1119. Baranow, P., & Kolanowska, M. (2019, October). Sertifera hirtziana (Orchidaceae, Sobralieae), a new species from southeastern Ecuador. In Annales Botanici Fennici (Vol. 56, No. 4-6, pp. 205-209). Barboza, G. E., García, C. C., González, S. L., Scaldaferro, M., & Reyes, X. (2019). Four new species of Capsicum (Solanaceae) from the tropical Andes and an update on the phylogeny of the genus. PloS one, 14(1), e0209792. Barrett, C. F., McKain, M. R., Sinn, B. T., Ge, X. J., Zhang, Y., Antonelli, A., & Bacon, C. D. (2019). Ancient polyploidy and genome evolution in palms. Genome biology and evolution, 11(5), 1501-1511. Bernal, R., Bacon, C. D., Balslev, H., Hoorn, C., Bourlat, S. -
Ectomycorrhizal Fungal Communities at Forest Edges 93, 244–255 IAN A
Journal of Blackwell Publishing, Ltd. Ecology 2005 Ectomycorrhizal fungal communities at forest edges 93, 244–255 IAN A. DICKIE and PETER B. REICH Department of Forest Resources, University of Minnesota, St Paul, MN, USA Summary 1 Ectomycorrhizal fungi are spatially associated with established ectomycorrhizal vegetation, but the influence of distance from established vegetation on the presence, abundance, diversity and community composition of fungi is not well understood. 2 We examined mycorrhizal communities in two abandoned agricultural fields in Minnesota, USA, using Quercus macrocarpa seedlings as an in situ bioassay for ecto- mycorrhizal fungi from 0 to 20 m distance from the forest edge. 3 There were marked effects of distance on all aspects of fungal communities. The abundance of mycorrhiza was uniformly high near trees, declined rapidly around 15 m from the base of trees and was uniformly low at 20 m. All seedlings between 0 and 8 m distance from forest edges were ectomycorrhizal, but many seedlings at 16–20 m were uninfected in one of the two years of the study. Species richness of fungi also declined with distance from trees. 4 Different species of fungi were found at different distances from the edge. ‘Rare’ species (found only once or twice) dominated the community at 0 m, Russula spp. were dominants from 4 to 12 m, and Astraeus sp. and a Pezizalean fungus were abundant at 12 m to 20 m. Cenococcum geophilum, the most dominant species found, was abundant both near trees and distant from trees, with lowest relative abundance at intermediate distances. 5 Our data suggest that seedlings germinating at some distance from established ecto- mycorrhizal vegetation (15.5 m in the present study) have low levels of infection, at least in the first year of growth. -
Improving Phylogenetic Inference of Mushrooms with RPB1 and RPB2 Nucleotide Sequences (Inocybe; Agaricales)
Molecular Phylogenetics and Evolution 35 (2005) 1–20 www.elsevier.com/locate/ympev Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales) P. Brandon Matheny¤,1 Biology Department, Box 351330, University of Washington, Seattle, WA 98195-5325, USA Received 9 July 2003; revised 15 May 2004 Available online 18 January 2005 Abstract Approximately 3000 bp across 84 taxa have been analyzed for variable regions of RPB1, RPB2, and nLSU-rDNA to infer phylo- genetic relationships in the large ectomycorrhizal mushroom genus Inocybe (Agaricales; Basidiomycota). This study represents the Wrst eVort to combine variable regions of RPB1 and RPB2 with nLSU-rDNA for low-level phylogenetic studies in mushroom-form- ing fungi. Combination of the three loci increases non-parametric bootstrap support, Bayesian posterior probabilities, and resolution for numerous clades compared to separate gene analyses. These data suggest the evolution of at least Wve major lineages in Inocybe— the Inocybe clade, the Mallocybe clade, the Auritella clade, the Inosperma clade, and the Pseudosperma clade. Additionally, many clades nested within each major lineage are strongly supported. These results also suggest the family Crepiodataceae sensu stricto is sister to Inocybe. Recognition of Inocybe at the family level, the Inocybaceae, is recommended. 2004 Elsevier Inc. All rights reserved. Keywords: Cortinariaceae; Fungi; Inocybaceae; nLSU-rDNA; RNA polymerase II; Systematics 1. Introduction room taxa in Inocybe and outgroups of the Agaricales, or euagarics clade, has been extended to include partial Nuclear genes that encode the two largest subunits of sequences of RPB1, RPB2, and nuclear large subunit RNA polymerase II are proving useful to infer the phy- ribosomal DNA (nLSU). -
Boletus Edulis and Cistus Ladanifer: Characterization of Its Ectomycorrhizae, in Vitro Synthesis, and Realised Niche
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche. Boletus edulis y Cistus ladanifer: caracterización de sus ectomicorrizas, síntesis in vitro y área potencial. Dª. Beatriz Águeda Hernández 2014 UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis AND Cistus ladanifer: CHARACTERIZATION OF ITS ECTOMYCORRHIZAE, in vitro SYNTHESIS, AND REALISED NICHE tesis doctoral BEATRIZ ÁGUEDA HERNÁNDEZ Memoria presentada para la obtención del grado de Doctor por la Universidad de Murcia: Dra. Luz Marina Fernández Toirán Directora, Universidad de Valladolid Dra. Asunción Morte Gómez Tutora, Universidad de Murcia 2014 Dª. Luz Marina Fernández Toirán, Profesora Contratada Doctora de la Universidad de Valladolid, como Directora, y Dª. Asunción Morte Gómez, Profesora Titular de la Universidad de Murcia, como Tutora, AUTORIZAN: La presentación de la Tesis Doctoral titulada: ‘Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche’, realizada por Dª Beatriz Águeda Hernández, bajo nuestra inmediata dirección y supervisión, y que presenta para la obtención del grado de Doctor por la Universidad de Murcia. En Murcia, a 31 de julio de 2014 Dra. Luz Marina Fernández Toirán Dra. Asunción Morte Gómez Área de Botánica. Departamento de Biología Vegetal Campus Universitario de Espinardo. 30100 Murcia T. 868 887 007 – www.um.es/web/biologia-vegetal Not everything that can be counted counts, and not everything that counts can be counted. Albert Einstein Le petit prince, alors, ne put contenir son admiration: -Que vous êtes belle! -N´est-ce pas, répondit doucement la fleur. Et je suis née meme temps que le soleil.. -
Occurrence of Mycorrhizae in Some Species of Carex (Cyperaceae) of the Darjeeling Himalayas, India
Research Article ISSN 2250-0480 VOL 4/ISSUE 1/JAN-MAR 2014 OCCURRENCE OF MYCORRHIZAE IN SOME SPECIES OF CAREX (CYPERACEAE) OF THE DARJEELING HIMALAYAS, INDIA *ASOK GHOSH 1, SHEKHAR BHUJEL 2 AND GAUR GOPAL MAITI 3 *1Department of Botany, Krishnagar Govt. College, Nadia, West Bengal, India 2Department of Botany, Darjeeling Govt. College, Darjeeling, West Bengal, India (Presently DTR&DC, Tea Board, A.B. Path, Kurseong, West Bengal, India) 3Department of Botany, University of Kalyani, Kalyani, West Bengal, India ABSTRACT The Cyperaceae (sedge family) have generally been considered non-mycorrhizal, although recent evidences suggest that mycotrophy may be considerably more widespread among sedges than was previously realized. In this study, 28 in situ populations of 12 species of Carex L.(C. myosurus Nees, C. composita Boott, C. cruciata Wahl., C. filicina Nees, C. inanis Kunth, C. setigera D. Don, C. insignis Boott, C. finitima var. finitima; C. fusiformis Nees subsp. finitima (Boott) Noltie, C. teres Boott, C. longipes D. Don ex Tilloch and Taylor, C. nubigena D. Don ex Tilloch and Taylor and C. rochebrunii subsp. rochebrunii; C. remota Linnaeus subsp. rochebrunii (Franchet and Savatier) Kükenthal) occurring in the Darjeeling Himalayas were surveyed. Mycorrhizal infection by VAM (Vesicular Arbuscular Mycorrhiza) fungi was found in roots of 9 species (C. myosurus, C. composita, C. cruciata, C. filicina, C. inanis, C. setigera, C. finitima, C. teres, and C. nubigena ) and appears to occur in response to many factors, both environmental and phylogenetic. In non-mycorrhizal species, a novel root character, the presence of bulbous-based root hairs, was identified. Key words: Carex, Cyperaceae, vesicular arbuscular mycorrhiza (VAM), mycotrophy, root hairs 1. -
Effects of Arbuscular Mycorrhizal Fungal Infection and Common Mycelial Network Formation on Invasive Plant Competition
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Winter 3-14-2014 Effects of Arbuscular Mycorrhizal Fungal Infection and Common Mycelial Network Formation on Invasive Plant Competition Rachael Elizabeth Workman Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Fungi Commons, and the Plant Biology Commons Let us know how access to this document benefits ou.y Recommended Citation Workman, Rachael Elizabeth, "Effects of Arbuscular Mycorrhizal Fungal Infection and Common Mycelial Network Formation on Invasive Plant Competition" (2014). Dissertations and Theses. Paper 2025. https://doi.org/10.15760/etd.2024 This Thesis is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Effects of Arbuscular Mycorrhizal Fungal Infection and Common Mycelial Network Formation on Invasive Plant Competition by Rachael Elizabeth Workman A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Biology Thesis Committee: Mitchell Cruzan, Chair Sarah Eppley Daniel Ballhorn Portland State University 2014 Abstract Understanding the biotic factors influencing invasive plant performance is essential for managing invaded land and preventing further exotic establishment and spread. I studied how competition between both conspecifics and native co-habitants and arbuscular mycorrhizal fungal (AMF) impacted the success of the invasive bunchgrass Brachypodium sylvaticum in early growth stages. I examined whether invasive plants performed and competed differently when grown in soil containing AMF from adjacent invaded and noninvaded ranges in order to determine the contribution of AMF to both monoculture stability and spread of the invasive to noninvaded territory.