Article Outlined the Here Refers to the History of Earth Prior to the Pliocene, Or Be- Model Experimental Design for Climate Model Simulations
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A New Ice Core Paleothermometer for Holocene and Transition Diffusion Processes Quantified by Spectral Methods
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN Master Thesis in Geophysics A New Ice Core Paleothermometer for Holocene and Transition Di®usion Processes Quanti¯ed by Spectral Methods Sebastian Bjerregaard Simonsen Centre for Ice and Climate, Niels Bohr Institute, University of Copenhagen Supervisor: Sigf¶usJ. Johnsen December 2008 II A New Ice Core Paleothermometer Master Thesis Title: A New Ice Core Paleothermometer for Holocene and Transition Subtitle: Di®usion Processes Quanti¯ed by Spectral Methods ECTS-points: 60 Supervisor: Sigfus J. Johnsen Name of department: Centre for Ice and Climate Neils Bohr Institute University of Copenhagen Author: Sebastian Bjerregaard Simonsen Date: December 31th 2008 Abstract Since the early 1950's stable water isotopes have been considered a temper- ature proxy with application in paleoclimatic reconstruction of permanently snow covered areas. In this thesis a new method of reconstructing the pale- oclimatic information preserved in the isotopic records from Arctic ice cores is tested. The method is based on the de¯nition of the di®erential di®usion 2 2 2 length ¢σ = σ18O ¡ σD. An investigation of the processes a®ecting the di®erential di®usion length is undertaken, covering the densi¯cation of ¯rn, ice flow modelling and isotopic di®usivity in the ¯rn and ice matrix. Three numerical power spectra density estimation methods have been used to retrieve the di®erential di®usion length in 22 sections of ice from two Greenlandic ice cores, GRIP and NGRIP. None of the methods are found superior, but both Burg's algorithm and the Autocorrelation methods show promising behaviors. The modelled and measured di®erential di®usion lengths form an estimate of the surface temperature at the origin of the ice core sections. -
A Proxy System Model for Lacustrine Archives 10.1029/2018PA003413
Paleoceanography and Paleoclimatology RESEARCH ARTICLE PRYSM v2.0: A Proxy System Model for Lacustrine Archives 10.1029/2018PA003413 Sylvia G. Dee1,2,3 , James M. Russell1,2, Carrie Morrill4,5 , Zihan Chen1, and Ashling Neary1 Key Points: • We present a publicly available 1Department of Earth, Environmental, and Planetary Sciences, Brown University, Providence, RI, USA, 2Institute at Brown forward model for lake paleoclimate 3 archives, expanding open-source for Environment and Society, Brown University, Providence, RI, USA, Department of Earth, Environmental, and Planetary tools for PRoxY System Modeling Sciences, Rice University, Houston, TX, USA, 4Cooperative Institute for Research in Environmental Sciences, University of (PRYSM) Colorado Boulder, Boulder, CO, USA, 5NOAA’s National Centers for Environmental Information, Boulder, CO, USA • The model simulates lake energy and water balance, sensors including TEX86,leafwax D, and carbonate 18O, bioturbation, and compaction Abstract Reconstructions of temperature and hydrology from lake sedimentary archives have made • Modeling the full lake system fundamental contributions to our understanding of past, present, and future climate and help evaluate demonstrates importance of mixing, general circulation models (GCMs). However, because paleoclimate observations are an indirect (proxy) nonstationarity, and seasonality in lake paleoclimate archives constraint on climatic variables, confounding effects of proxy processes complicate interpretations of these archives. To circumvent these uncertainties inherent to paleoclimate data-model comparison, proxy system models (PSMs) provide transfer functions between climate variables and the proxy. We here present a Supporting Information: new PSM for lacustrine sedimentary archives. The model simulates lake energy and water balance, sensors • Supporting Information S1 including leaf wax D and carbonate 18O, bioturbation, and compaction of sediment to lend insight toward how these processes affect and potentially obfuscate the original climate signal. -
Archaeal Distribution and Abundance in Water Masses of the Arctic Ocean, Pacific Sector
Vol. 69: 101–112, 2013 AQUATIC MICROBIAL ECOLOGY Published online April 30 doi: 10.3354/ame01624 Aquat Microb Ecol FREEREE ACCESSCCESS Archaeal distribution and abundance in water masses of the Arctic Ocean, Pacific sector Chie Amano-Sato1, Shohei Akiyama1, Masao Uchida2, Koji Shimada3, Motoo Utsumi1,* 1University of Tsukuba, Tennodai, Tsukuba, Ibaraki 305-8572, Japan 2National Institute for Environmental Studies, Onogawa, Tsukuba, Ibaraki 305-8506, Japan 3Tokyo University of Marine Science and Technology, Konan, Minato-ku, Tokyo 108-8477, Japan ABSTRACT: Marine planktonic Archaea have been recently recognized as an ecologically impor- tant component of marine prokaryotic biomass in the world’s oceans. Their abundance and meta- bolism are closely connected with marine geochemical cycling. We evaluated the distribution of planktonic Archaea in the Pacific sector of the Arctic Ocean using fluorescence in situ hybridiza- tion (FISH) with catalyzed reporter deposition (CARD-FISH) and performed statistical analyses using data for archaeal abundance and geochemical variables. The relative abundance of Thaum - archaeota generally increased with depth, and euryarchaeal abundance was the lowest of all planktonic prokaryotes. Multiple regression analysis showed that the thaumarchaeal relative abundance was negatively correlated with ammonium and dissolved oxygen concentrations and chlorophyll fluorescence. Canonical correspondence analysis showed that archaeal distributions differed with oceanographic water masses; in particular, Thaumarchaeota were abundant from the halocline layer to deep water, where salinity was higher and most nutrients were depleted. However, at several stations on the East Siberian Sea side of the study area and along the North- wind Ridge, Thaumarchaeota and Bacteria were proportionally very abundant at the bottom in association with higher nutrient conditions. -
Novel Insights Into the Thaumarchaeota in the Deepest Oceans: Their Metabolism and Potential Adaptation Mechanisms
Zhong et al. Microbiome (2020) 8:78 https://doi.org/10.1186/s40168-020-00849-2 RESEARCH Open Access Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms Haohui Zhong1,2, Laura Lehtovirta-Morley3, Jiwen Liu1,2, Yanfen Zheng1, Heyu Lin1, Delei Song1, Jonathan D. Todd3, Jiwei Tian4 and Xiao-Hua Zhang1,2,5* Abstract Background: Marine Group I (MGI) Thaumarchaeota, which play key roles in the global biogeochemical cycling of nitrogen and carbon (ammonia oxidizers), thrive in the aphotic deep sea with massive populations. Recent studies have revealed that MGI Thaumarchaeota were present in the deepest part of oceans—the hadal zone (depth > 6000 m, consisting almost entirely of trenches), with the predominant phylotype being distinct from that in the “shallower” deep sea. However, little is known about the metabolism and distribution of these ammonia oxidizers in the hadal water. Results: In this study, metagenomic data were obtained from 0–10,500 m deep seawater samples from the Mariana Trench. The distribution patterns of Thaumarchaeota derived from metagenomics and 16S rRNA gene sequencing were in line with that reported in previous studies: abundance of Thaumarchaeota peaked in bathypelagic zone (depth 1000–4000 m) and the predominant clade shifted in the hadal zone. Several metagenome-assembled thaumarchaeotal genomes were recovered, including a near-complete one representing the dominant hadal phylotype of MGI. Using comparative genomics, we predict that unexpected genes involved in bioenergetics, including two distinct ATP synthase genes (predicted to be coupled with H+ and Na+ respectively), and genes horizontally transferred from other extremophiles, such as those encoding putative di-myo-inositol-phosphate (DIP) synthases, might significantly contribute to the success of this hadal clade under the extreme condition. -
ARTICLE in PRESS + MODEL EPSL-08806; No of Pages 16
ARTICLE IN PRESS + MODEL EPSL-08806; No of Pages 16 Earth and Planetary Science Letters xx (2007) xxx–xxx www.elsevier.com/locate/epsl Sr/Ca and Mg/Ca vital effects correlated with skeletal architecture in a scleractinian deep-sea coral and the role of Rayleigh fractionation ⁎ Alexander C. Gagnon a, , Jess F. Adkins b, Diego P. Fernandez b,1, Laura F. Robinson c a Division of Chemistry, California Institute of Technology, MC 114-96, Pasadena, CA 91125, USA b Division of Geological and Planetary Sciences, California Institute of Technology, MC 100-23, Pasadena, CA 91125, USA c Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA Received 29 November 2006; received in revised form 15 May 2007; accepted 3 July 2007 Editor: H. Elderfield Abstract Deep-sea corals are a new tool in paleoceanography with the potential to provide century long records of deep ocean change at sub- decadal resolution. Complicating the reconstruction of past deep-sea temperatures, Mg/Ca and Sr/Ca paleothermometers in corals are also influenced by non-environmental factors, termed vital effects. To determine the magnitude, pattern and mechanism of vital effects we measure detailed collocated Sr/Ca and Mg/Ca ratios, using a combination of micromilling and isotope-dilution ICP-MS across skeletal features in recent samples of Desmophyllum dianthus, a scleractinian coral that grows in the near constant environment of the deep-sea. Sr/Ca variability across skeletal features is less than 5% (2σ relative standard deviation) and variability of Sr/Ca within the optically dense central band, composed of small and irregular aragonite crystals, is significantly less than the surrounding skeleton. -
Marine Isotopic Stage 5E in the Southwest Pacific: Similarities With
GEOPHYSICAL RESEARCH LETTERS, VOL. 30, NO. 23, 2185, doi:10.1029/2003GL018191, 2003 Marine Isotopic Stage 5e in the Southwest Pacific: Similarities with Antarctica and ENSO inferences Carles Pelejero1 and Eva Calvo1 Research School of Earth Sciences, The Australian National University, Canberra, Australia Graham A. Logan Petroleum and Marine Division, Geoscience Australia, Canberra, Australia Patrick De Deckker Department of Geology, The Australian National University, Canberra, Australia Received 17 July 2003; revised 15 September 2003; accepted 8 October 2003; published 3 December 2003. [1] A detailed record of alkenone-derived sea-surface matic importance such as El Nin˜o-Southern Oscillation temperatures (SSTs) offshore western New Zealand has (ENSO). Key controls on these oscillations are sea-surface been generated for the penultimate deglaciation and last temperature (SST) gradients [Rind, 1998]. interglacial. SSTs were 3.5 to 4.5°C warmer than present, [3] This study focuses on the penultimate deglaciation peaking 4.5 thousand years ahead of ice volume minima. and the subsequent Marine Isotope Stage 5e/5d shift. New The short duration of Marine Isotopic Stage 5e off New insights are presented on the peculiar characteristics of Zealand exhibits a striking parallelism to the record of air Stage 5e as recorded off New Zealand, a period often temperatures at Vostok, Antarctica. Changes in latitudinal considered analogous to the present interglacial stage. SST gradients for the Southwest Pacific from New Zealand Comparison between SSTs off New Zealand and at the to the equator are also assessed, showing values consistently equator allows the reconstruction of meridional thermal lower than today. In this region, this situation usually occurs gradients in the Southwest Pacific. -
The Role of Stress Proteins in Haloarchaea and Their Adaptive Response to Environmental Shifts
biomolecules Review The Role of Stress Proteins in Haloarchaea and Their Adaptive Response to Environmental Shifts Laura Matarredona ,Mónica Camacho, Basilio Zafrilla , María-José Bonete and Julia Esclapez * Agrochemistry and Biochemistry Department, Biochemistry and Molecular Biology Area, Faculty of Science, University of Alicante, Ap 99, 03080 Alicante, Spain; [email protected] (L.M.); [email protected] (M.C.); [email protected] (B.Z.); [email protected] (M.-J.B.) * Correspondence: [email protected]; Tel.: +34-965-903-880 Received: 31 July 2020; Accepted: 24 September 2020; Published: 29 September 2020 Abstract: Over the years, in order to survive in their natural environment, microbial communities have acquired adaptations to nonoptimal growth conditions. These shifts are usually related to stress conditions such as low/high solar radiation, extreme temperatures, oxidative stress, pH variations, changes in salinity, or a high concentration of heavy metals. In addition, climate change is resulting in these stress conditions becoming more significant due to the frequency and intensity of extreme weather events. The most relevant damaging effect of these stressors is protein denaturation. To cope with this effect, organisms have developed different mechanisms, wherein the stress genes play an important role in deciding which of them survive. Each organism has different responses that involve the activation of many genes and molecules as well as downregulation of other genes and pathways. Focused on salinity stress, the archaeal domain encompasses the most significant extremophiles living in high-salinity environments. To have the capacity to withstand this high salinity without losing protein structure and function, the microorganisms have distinct adaptations. -
CURRICULUM VITAE Kevin J. Anchukaitis
CURRICULUM VITAE Kevin J. Anchukaitis Address University of Arizona School of Geography, Development, and Environment ENR2 Building, Office S514 1064 E Lowell Street, PO Box 210137 Tucson, AZ 85721-0137 orcid: 0000-0002-8509-8080 email: [email protected] github: https://github.com/kanchukaitis internet: http://www.u.arizona.edu/∼kanchukaitis/ Appointments University of Arizona Tucson, AZ 2021 – Professor, School of Geography, Development, and Environment Chair, Graduate Interdisciplinary Program in Global Change Associate, Center for Climate Adaptation Science and Solutions (CCASS) Joint Appointment, Laboratory of Tree-Ring Research Joint Appointment, Department of Geosciences 2015 – 2021 Associate Professor, School of Geography, Development, and Environment Lamont Doherty Earth Observatory of Columbia University New York, NY 2012 – Adjunct Research Scientist Woods Hole Oceanographic Institution Woods Hole, MA 2012 – 2015 Assistant Scientist Lamont Doherty Earth Observatory of Columbia University New York, NY 2010 – 2012 Lamont Assistant Research Professor 2009 – 2010 Doherty Associate Research Scientist 2007 – 2009 Lamont-Doherty Postdoctoral Research Fellow Education University of Arizona Tucson, AZ 2007 Ph.D., Geosciences University of Tennessee Knoxville, TN 2002 M.S., Geography Georgetown University Washington, DC 1998 B.S., (cum Laude) Science, Technology, & International Affairs School of Foreign Service Major Field: Environmental Science (with Honors) Foreign study at University of Costa Rica, Institute for Tropical Studies (Golfito), 1996 – 1997 Publications Submitted or in Revision (y = postdoctoral author, z = student author) Brice, R., B.L. Coulthard, I.K. Homfeld, L.A. Dye, K.J. Anchukaitis, Paleohydrological context for recent floods and droughts in the Fraser River basin, submitted, 2021 z Zhu, F., J. Emile-Geay, K.J. -
Bayesian Calibration of the Mg/Ca Paleothermometer in Planktic Foraminifera”
“Bayesian calibration of the Mg/Ca paleothermometer in planktic foraminifera” Jessica E. Tierney1, Steven B. Malevich1, William Gray2, Lael Vetter1 & Kaustubh Thirumalai1 1University of Arizona, Department of Geosciences, 1040 4th St. Tucson, AZ 85721. 2Laboratoire des Sciences du Climat et de l’Environnement (LSCE/IPSL), Gif-sur-Yvette, France This is a post print of a paper published in the journal Paleoceanography and Paleoclimatology, doi: 10.1029/2019PA003744 https://doi.org/10.1029/2019PA003744 manuscript submitted to Paleoceanography and Paleoclimatology 1 Bayesian calibration of the Mg/Ca paleothermometer 2 in planktic foraminifera 1 1 2 1 3 Jessica E. Tierney , Steven B. Malevich , William Gray , Lael Vetter & 1 4 Kaustubh Thirumalai 1 5 University of Arizona Department of Geosciences, 1040 E 4th St Tucson AZ 85721 2 6 Laboratoire des Sciences du Climat et de l’Environnement (LSCE/IPSL), Gif-sur-Yvette, France 7 Key Points: 8 • We introduce Mg/Ca Bayesian calibrations for planktic foraminifera 9 • Hierarchical modeling is used to constrain multivariate Mg/Ca sensitivities 10 • For deep-time applications, we incorporate estimates of Mg/Ca of seawater Corresponding author: Jessica Tierney, [email protected] –1– manuscript submitted to Paleoceanography and Paleoclimatology 11 Abstract 12 The Mg/Ca ratio of planktic foraminifera is a widely-used proxy for sea-surface temper- 13 ature, but is also sensitive to other environmental factors. Previous work has relied on 14 correcting Mg/Ca for non-thermal influences. Here, we develop a set of Bayesian mod- 15 els for Mg/Ca in four major planktic groups – Globigerinoides ruber (including both pink 16 and white chromotypes), Trilobatus sacculifer, Globigerina bulloides, and Neogloboquad- 17 rina pachyderma (including N. -
Planktonic Euryarchaeota Are a Significant Source of Archaeal Tetraether Lipids in the Ocean
Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean Sara A. Lincolna,b,1,2, Brenner Waib,c, John M. Eppleyb,d, Matthew J. Churchb,c, Roger E. Summonsa, and Edward F. DeLongb,c,d,2 aDepartment of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139; bCenter for Microbial Oceanography: Research and Education, University of Hawaii at Manoa, Honolulu, HI 96822; cDepartment of Oceanography, School of Ocean and Earth Science and Technology, University of Hawaii at Manoa, Honolulu, HI 96822; and dDepartment of Civil and Environmental Engineering and Division of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 Contributed by Edward F. DeLong, May 23, 2014 (sent for review October 6, 2013) Archaea are ubiquitous in marine plankton, and fossil forms of Thaumarchaeota (1, 2, 12)—have been isolated in pure culture. archaeal tetraether membrane lipids in sedimentary rocks docu- All MG-I strains isolated to date are chemolithoautotrophic, ment their participation in marine biogeochemical cycles for >100 fixing inorganic carbon via energy obtained from the oxidation of million years. Ribosomal RNA surveys have identified four major ammonia to nitrite (13). Recent evidence suggests that MG-I clades of planktonic archaea but, to date, tetraether lipids have also contribute to the flux of potent greenhouse gases nitrous been characterized in only one, the Marine Group I Thaumarch- oxide (14) and methane (15) from the water column to the at- aeota. The membrane lipid composition of the other planktonic mosphere. The membrane lipid assemblage of MG-I includes — — archaeal groups all uncultured Euryarchaeota is currently un- GDGTs with zero through four cyclopentyl moieties and cren- known. -
95. Lea D. W., Elemental and Isotopic Proxies of Past Ocean
This article was originally published in Treatise on Geochemistry, Second Edition published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non- commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial Lea D.W. (2014) Elemental and Isotopic Proxies of Past Ocean Temperatures. In: Holland H.D. and Turekian K.K. (eds.) Treatise on Geochemistry, Second Edition, vol. 8, pp. 373-397. Oxford: Elsevier. © 2014 Elsevier Ltd. All rights reserved. Author's personal copy 8.14 Elemental and Isotopic Proxies of Past Ocean Temperatures DW Lea, University of California, Santa Barbara, CA, USA ã 2014 Elsevier Ltd. All rights reserved. 8.14.1 Introduction 373 8.14.2 A Brief History of Early Research on Geochemical Proxies of Temperature 374 8.14.3 Oxygen Isotopes as a PaleotemperatureProxy in Foraminifera 375 8.14.3.1 Background 375 8.14.3.2 Paleotemperature Equations 376 8.14.3.3 Secondary Effects and Diagenesis 376 8.14.3.4 Results -
Diversity of Archaea Domain in Cuatro Cienegas Basin: Archaean Domes
bioRxiv preprint doi: https://doi.org/10.1101/766709; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Diversity of Archaea Domain in Cuatro Cienegas Basin: Archaean Domes 2 3 Medina-Chávez Nahui Olin1, Viladomat-Jasso Mariette2, Olmedo-Álvarez Gabriela3, Eguiarte Luis 4 E2, Souza Valeria2, De la Torre-Zavala Susana1,4 5 6 1Universidad Autónoma de Nuevo León, Facultad de Ciencias Biológicas, Instituto de 7 Biotecnología. Av. Pedro de Alba S/N Ciudad Universitaria. San Nicolás de los Garza, Nuevo León, 8 México. C.P. 66455. 9 2Instituto de Ecología, UNAM, Circuito Exterior S/N anexo Jardín Botánico exterior. Ciudad 10 Universitaria, Ciudad de México, C.P. 04500 11 3Departamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados del I.P.N. 12 Campus Guanajuato, AP 629 Irapuato, Guanajuato 36500, México 13 14 4Correspondence should be addressed to Susana De la Torre-Zavala; 15 [email protected]. 16 17 18 19 20 21 22 1 bioRxiv preprint doi: https://doi.org/10.1101/766709; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 23 Abstract 24 Herein we describe the Archaea diversity in a shallow pond in the Cuatro Ciénegas Basin (CCB), 25 Northeast Mexico, with fluctuating hypersaline conditions containing elastic microbial mats that 26 can form small domes where their anoxic inside reminds us of the characteristics of the Archaean 27 Eon, rich in methane and sulfur gases; thus, we named this site the Archaean Domes (AD).